View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11675_low_14 (Length: 236)
Name: NF11675_low_14
Description: NF11675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11675_low_14 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12976678 - 12976443
Alignment:
| Q |
1 |
gtccctagtgcttgtagttgttttgcagctgaccaattccttgatacactccaagaaagtgatctaaaatgaccaaattgagatgaatctttatctttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976678 |
gtccctagtgcttgtagttgttttgcagctgaccaattccttgatacactccaagaaagtgatctaaaatgaccaaattgagatgaatctttatctttac |
12976579 |
T |
|
| Q |
101 |
taacaatgtttctaccaaatgatctatttctattaccaaaggaagaaacattattagaatctttactactagcatcaatcttaccaatttctaaatcaac |
200 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976578 |
taacattgtttctactaaatgatctatttctattaccaaaggaagaaacattattagaatctttactactagcatcaatcttaccaatttctaaatcaac |
12976479 |
T |
|
| Q |
201 |
aagagctttcttagcgcgacgaaattggccttcccc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976478 |
aagagctttcttagcgcgacgaaattggccttcccc |
12976443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 13009077 - 13008842
Alignment:
| Q |
1 |
gtccctagtgcttgtagttgttttgcagctgaccaattccttgatacactccaagaaagtgatctaaaatgaccaaattgagatgaatctttatctttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
13009077 |
gtccctagtgcttgtagttgttttgcagctgaccaattccttgatacactccaagaaagtgatctaaaatgaccaacttgtgatgaatctttatctttac |
13008978 |
T |
|
| Q |
101 |
taacaatgtttctaccaaatgatctatttctattaccaaaggaagaaacattattagaatctttactactagcatcaatcttaccaatttctaaatcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13008977 |
taacaatgtttctaccaaatgatctatttctattaccaaaggaagaaacattattagaatctttactactagcatcaatcttaccaatttctaaatcaac |
13008878 |
T |
|
| Q |
201 |
aagagctttcttagcgcgacgaaattggccttcccc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13008877 |
aagagctttcttagcgcgacgaaattggccttcccc |
13008842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 13012635 - 13012401
Alignment:
| Q |
1 |
gtccctagtgcttgtagttgttttgcagctgaccaattccttgatacactccaagaaagtgatctaaaatgaccaaattgagatgaatctttatctttac |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| | |
|
|
| T |
13012635 |
gtccctattgcttgtagttgttttgcagctgaccaattccttgatacactccaagaaagtgatctaaaatg-ccaacttgagatgaccctttatctccat |
13012537 |
T |
|
| Q |
101 |
taacaatgtttctaccaaatgatctatttctattaccaaaggaagaaacattattagaatctttactactagcatcaatcttaccaatttctaaatcaac |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13012536 |
taacattgtttctaccaaatgatctatttctattaccaaaggaagaaacattattagaatctttactactagcatcaatcataccaatttctaaatcaac |
13012437 |
T |
|
| Q |
201 |
aagagctttcttagcgcgacgaaattggccttcccc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13012436 |
aagagctttcttagcgcgacgaaattggccttcccc |
13012401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 13031432 - 13031198
Alignment:
| Q |
1 |
gtccctagtgcttgtagttgttttgcagctgaccaattccttgatacactccaagaaagtgatctaaaatgaccaaattgagatgaatctttatctttac |
100 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || |
|
|
| T |
13031432 |
gtccctattgcttgtagttgtttt-cagctgaccaatttcttgatacactccttgaaagtgatctaaaatgaccaacttgagatgaccctttatctctat |
13031334 |
T |
|
| Q |
101 |
taacaatgtttctaccaaatgatctatttctattaccaaaggaagaaacattattagaatctttactactagcatcaatcttaccaatttctaaatcaac |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13031333 |
taacattgtttctaccaaatgatctatttttattaccaaaggaagaaacattattagaatctttactactagcatcaatcataccaatttctaaatcaac |
13031234 |
T |
|
| Q |
201 |
aagagctttcttagcgcgacgaaattggccttcccc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13031233 |
aagagctttcttagcgcgacgaaattggccttcccc |
13031198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 12997657 - 12997603
Alignment:
| Q |
182 |
taccaatttctaaatcaacaagagctttcttagcgcgacgaaattggccttcccc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12997657 |
taccaatttctaaatcaacaagagctttcttagcgcgacgaaattggccttcccc |
12997603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University