View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11675_low_16 (Length: 218)

Name: NF11675_low_16
Description: NF11675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11675_low_16
NF11675_low_16
[»] chr3 (19 HSPs)
chr3 (55-202)||(22368210-22368357)
chr3 (55-198)||(22468250-22468393)
chr3 (55-198)||(22630741-22630884)
chr3 (59-198)||(22358304-22358443)
chr3 (71-198)||(22354113-22354242)
chr3 (55-191)||(22443048-22443184)
chr3 (55-159)||(22632206-22632310)
chr3 (58-198)||(22635805-22635945)
chr3 (73-199)||(22431453-22431578)
chr3 (73-191)||(22458798-22458916)
chr3 (73-191)||(22481779-22481897)
chr3 (58-191)||(22436943-22437076)
chr3 (6-59)||(22359155-22359208)
chr3 (6-59)||(22369057-22369110)
chr3 (92-191)||(21945682-21945781)
chr3 (59-138)||(22615621-22615700)
chr3 (92-150)||(2818650-2818708)
chr3 (57-191)||(21937176-21937310)
chr3 (89-150)||(2797451-2797512)
[»] chr8 (1 HSPs)
chr8 (92-140)||(27294606-27294654)
[»] chr1 (1 HSPs)
chr1 (89-189)||(34980217-34980317)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 22368357 - 22368210
Alignment:
Q  55 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 154  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  22368357 agagggaagagcacaccgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtcgtt 22368258  T
Q  155 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataat 202  Q
    ||||| ||||| |||| | ||||||||||||| |||||||||||||||    
T  22368257 aaacactttgattgtcgtttatggatcacggtttctcgaccatataat 22368210  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 55 - 198
Target Start/End: Complemental strand, 22468393 - 22468250
Alignment:
Q  55 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 154  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  22468393 agagggaagagcagagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgtt 22468294  T
Q  155 aaacattttgactgtcatgtatggatcacggtgtctcgaccata 198  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  22468293 aaacattttgattgtcatgtatggatcacggtgtctcgaccata 22468250  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 55 - 198
Target Start/End: Complemental strand, 22630884 - 22630741
Alignment:
Q  55 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 154  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||||||||||    
T  22630884 agagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgtt 22630785  T
Q  155 aaacattttgactgtcatgtatggatcacggtgtctcgaccata 198  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||    
T  22630784 aaacactttgattgtcatgaatggatcacggtgtctcgaccata 22630741  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 22358443 - 22358304
Alignment:
Q  59 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaac 158  Q
    ||||||||| | || ||| |||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||| ||||    
T  22358443 ggaagagcagaccggacaattgtctccattgttggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaac 22358344  T
Q  159 attttgactgtcatgtatggatcacggtgtctcgaccata 198  Q
    | |||||  ||| ||||||||| |||||||||||||||||    
T  22358343 actttgatcgtcgtgtatggattacggtgtctcgaccata 22358304  T

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Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 22354242 - 22354113
Alignment:
Q  71 cgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtc 170  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||| |||||  | ||||| |||     
T  22354242 cgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccagaaaagtttttgacaaccaaaaggtagttaagaactttgattgtt 22354143  T
Q  171 atg--tatggatcacggtgtctcgaccata 198  Q
    |||  ||||||||||||| |||||||||||    
T  22354142 atgtatatggatcacggtatctcgaccata 22354113  T

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Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 22443184 - 22443048
Alignment:
Q  55 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 154  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||   || ||||||||||||||||||| |||    
T  22443184 agagggaagagaagaccgcacagttgtctccattgttggaatgggaggattgggaaaaaccactctagccagacaaatttttgacaaccaaaaggtagtt 22443085  T
Q  155 aaacattttgactgtcatgtatggatcacggtgtctc 191  Q
    || || |||||||||| | ||||||||| ||||||||    
T  22443084 aagcactttgactgtcttttatggatcatggtgtctc 22443048  T

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Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 22632310 - 22632206
Alignment:
Q  55 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 154  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| |||||    
T  22632310 agagggaagagcagatcgcacagttgtctccattattggaatgggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaagatcgtt 22632211  T
Q  155 aaaca 159  Q
    |||||    
T  22632210 aaaca 22632206  T

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Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 22635945 - 22635805
Alignment:
Q  58 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaa 157  Q
    |||||||||| | || ||| ||||||||||  |||||||||||||||  ||||||| |||||| || ||||||||||||||||||| ||||||||| |||    
T  22635945 gggaagagcagaccggacaattgtctccatctttggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaa 22635846  T
Q  158 cattttgactgtcatgtatggatcacggtgtctcgaccata 198  Q
     | ||||| |||| ||||||||| |||||||||||||||||    
T  22635845 tactttgattgtcgtgtatggattacggtgtctcgaccata 22635805  T

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Target: chr3; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 22431578 - 22431453
Alignment:
Q  73 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 172  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||||||||| | | |||| ||||||| ||||| |||| |    
T  22431578 cacagtggtctccattgt-ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgt 22431480  T
Q  173 gtatggatcacggtgtctcgaccatat 199  Q
     |||||||||| ||||||| |||||||    
T  22431479 ttatggatcacagtgtctcaaccatat 22431453  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 22458916 - 22458798
Alignment:
Q  73 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 172  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||    
T  22458916 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcat 22458817  T
Q  173 gtatggatcacggtgtctc 191  Q
    ||||||||||  |||||||    
T  22458816 gtatggatcagagtgtctc 22458798  T

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Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 22481897 - 22481779
Alignment:
Q  73 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 172  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||    
T  22481897 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcat 22481798  T
Q  173 gtatggatcacggtgtctc 191  Q
    ||||||||||  |||||||    
T  22481797 gtatggatcagagtgtctc 22481779  T

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Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 22437076 - 22436943
Alignment:
Q  58 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaa 157  Q
    |||||||| | ||||  |||||||||| ||||| ||||||||||| |  |||||||  ||||| ||||||||||||||||| |||   || ||| | |||    
T  22437076 gggaagagtagagcgtgcagttgtctctattgtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaa 22436977  T
Q  158 cattttgactgtcatgtatggatcacggtgtctc 191  Q
    || ||||||||||||||||||||||| |||||||    
T  22436976 caatttgactgtcatgtatggatcacagtgtctc 22436943  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 22359208 - 22359155
Alignment:
Q  6 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 59  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22359208 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22359155  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 22369110 - 22369057
Alignment:
Q  6 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 59  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22369110 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22369057  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 21945682 - 21945781
Alignment:
Q  92 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctc 191  Q
    ||||||||||| |  ||||||| |||||| ||||||||||||||||||| | |  | ||| ||  ||| ||||| |||| |||||||||||| |||||||    
T  21945682 ggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgtcatttgacactttgattgtcttgtatggatcactgtgtctc 21945781  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 22615700 - 22615621
Alignment:
Q  59 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttga 138  Q
    ||||||| | ||||||| ||||||||  | || ||||||||||| | ||| |||| ||||||||||||||| ||||||||    
T  22615700 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttga 22615621  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 2818650 - 2818708
Alignment:
Q  92 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggt 150  Q
    |||||||| || || ||||||| |||||||||||||  ||||||||||| |||||||||    
T  2818650 ggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggt 2818708  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 21937176 - 21937310
Alignment:
Q  57 agggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaa 156  Q
    ||||||| ||| ||||||| ||||| ||  | || ||||||||||| |  ||||||| |||||| || ||||||| |||||||| | |  | ||||||      
T  21937176 agggaagggcagagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgttgg 21937275  T
Q  157 acattttgactgtcatgtatggatcacggtgtctc 191  Q
    ||| ||||| |||| |||||||||||| |||||||    
T  21937276 acactttgattgtcgtgtatggatcacagtgtctc 21937310  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 2797451 - 2797512
Alignment:
Q  89 gttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggt 150  Q
    |||||||||||||| || ||||||| |||||||||||||  |||||| ||||  ||||||||    
T  2797451 gttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggt 2797512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 27294606 - 27294654
Alignment:
Q  92 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 140  Q
    |||||||||||||  ||||||| |||||| | |||||||||||||||||    
T  27294606 ggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgaca 27294654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 34980217 - 34980317
Alignment:
Q  89 gttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgt 188  Q
    |||||||||||||| |  |||||||| |||||||| || ||||||||||| | | || |||| ||   ||| ||||| |||| |||||||||||| ||||    
T  34980217 gttggaatgggagggcaaggaaaaataactcttgctaaaaaagtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgt 34980316  T
Q  189 c 189  Q
    |    
T  34980317 c 34980317  T

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