View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11675_low_2 (Length: 586)
Name: NF11675_low_2
Description: NF11675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11675_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Complemental strand, 8405449 - 8404888
Alignment:
| Q |
19 |
acagaacaccatctcagattttgagtctaactaaatatcacaaaaccaatatacaaagcaagcacaaacattgattggtttggtaattttatttagtcta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8405449 |
acagaacaccatctcagattttgagtctaactaaatatcacaaaaccaatatacaaagcaagcacaaacattgattggtttggtaattttatttagtcta |
8405350 |
T |
|
| Q |
119 |
actcaatgtgtttgtttttctcaatactattcaactaaaatttcttatctaattggaatccaacaaatttgaaaacaaatggtaatgtgtaaaatccttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8405349 |
actcaatgtgtttgtttttctcaatactattcaactaaaatttcttatctaattggaatccaacaaatttgaaaacaaatggtaatgtgtaaaatccttt |
8405250 |
T |
|
| Q |
219 |
tactaatggagagctaaaagaaaaggagaaacaactagaatttgaatccataacaatcatgttgtaaatgaaaataaacaaggatttgagaatgcataca |
318 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8405249 |
aactaaaggagagctaaaagaaaaggagaaacaactagaatttgaatccataacaatcatgttgtaaatgaaaataaacaaggacttgagaatgcataca |
8405150 |
T |
|
| Q |
319 |
tcatcccaatgaatgaattgacacctaactactactaaccttcttcaatgaaaacagacaatccaaaatcagtggctttcaaaggagccttatgatcttt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8405149 |
tcatcccaatgaatgaattgacacctaactactactaaccttcttcaataaaaacagacaatccaaaatcagtggctttcaaaggagccttatgatcttt |
8405050 |
T |
|
| Q |
419 |
actagcaagcaagaaattctcaggcttaaggtccctatgcatgacccccataaaatgacaagcatgaaccacattcataatctgcttaaatatagaagca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8405049 |
actagcaagcaagaaattctcaggcttaaggtccctatgcatgacccccataaaatgacaagcatgaaccacattcataatctgcttaaatatagaagca |
8404950 |
T |
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| Q |
519 |
gcttcacgctcagagtaactaccctttgcagtgatccgtgcagtgatacgatcgaaacgctc |
580 |
Q |
| |
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| T |
8404949 |
gcttcacgctcagagtaactaccctttgcagtgatccgtgcagtgatccgatcgaaaagctc |
8404888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 356 - 502
Target Start/End: Complemental strand, 8403703 - 8403557
Alignment:
| Q |
356 |
accttcttcaatgaaaacagacaatccaaaatcagtggctttcaaaggagccttatgatctttactagcaagcaagaaattctcaggcttaaggtcccta |
455 |
Q |
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||||||||||| ||||| || | |||||||||||| ||||| | || ||| || | |||||| ||||||||||||||||||||||||||| || | | |
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| T |
8403703 |
accttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacga |
8403604 |
T |
|
| Q |
456 |
tgcatgacccccataaaatgacaagcatgaaccacattcataatctg |
502 |
Q |
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||||| || |||||||||||||| |||| |||||||||| |||||| |
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| T |
8403603 |
tgcataacacccataaaatgacacacatgcaccacattcacaatctg |
8403557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 356 - 520
Target Start/End: Complemental strand, 20501600 - 20501436
Alignment:
| Q |
356 |
accttcttcaatgaaaacagacaatccaaaatcagtggctttcaaaggagccttatgatctttactagcaagcaagaaattctcaggcttaaggtcccta |
455 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| || || | | | || || | |||||||||||| | |||||||||||| || || || |||||| |
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| T |
20501600 |
accttcttcaatgaaaacagacaaaccaaaatcagtagccttaagaagtgcattttcatctttactagccaacaagaaattctctggtttcagatcccta |
20501501 |
T |
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| Q |
456 |
tgcatgacccccataaaatgacaagcatgaaccacattcataatctgcttaaatatagaagcagc |
520 |
Q |
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||||| || ||||||||||||||| || ||| ||||| | |||||| || | ||||||||||| |
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| T |
20501500 |
tgcataactcccataaaatgacaaatattaacaacattaacaatctgtctacaaatagaagcagc |
20501436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 493
Target Start/End: Complemental strand, 40537245 - 40537108
Alignment:
| Q |
356 |
accttcttcaatgaaaacagacaatccaaaatcagtggctttcaaaggagccttatgatctttactagcaagcaagaaattctcaggcttaaggtcccta |
455 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||| ||| || | || ||||||| ||| ||||||| | ||||||||| || ||||| | || ||| |
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| T |
40537245 |
accttcttcaatgaaaaccgacaaaccgaaatcagcggccttgatagttgccttatcatccttactagacaacaagaaattttctggcttcaaatctcta |
40537146 |
T |
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| Q |
456 |
tgcatgacccccataaaatgacaagcatgaaccacatt |
493 |
Q |
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||||| || ||||||||||||||| |||||| ||||| |
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| T |
40537145 |
tgcatcacacccataaaatgacaaatatgaacaacatt |
40537108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 356 - 493
Target Start/End: Complemental strand, 40532280 - 40532143
Alignment:
| Q |
356 |
accttcttcaatgaaaacagacaatccaaaatcagtggctttcaaaggagccttatgatctttactagcaagcaagaaattctcaggcttaaggtcccta |
455 |
Q |
| |
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||||||||| |||||||| ||||| || ||||||||||| || | || ||||||| ||| ||||||| | ||||||||| || || || | || ||| |
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| T |
40532280 |
accttcttcgatgaaaaccgacaaaccgaaatcagtggccttgatagttgccttatcatccttactagacaacaagaaattttctggtttcaaatctcta |
40532181 |
T |
|
| Q |
456 |
tgcatgacccccataaaatgacaagcatgaaccacatt |
493 |
Q |
| |
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||||| || ||||||||||||||| |||||| ||||| |
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| T |
40532180 |
tgcatcacacccataaaatgacaaatatgaacaacatt |
40532143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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