View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11675_low_5 (Length: 422)
Name: NF11675_low_5
Description: NF11675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11675_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 9580343 - 9580603
Alignment:
| Q |
18 |
attgaaattggcaaaagtattttatatgtttcccaaaagacttggtattttgtttcagttcacggtacttctcatgttttaaatcttgaaaagagttcga |
117 |
Q |
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| T |
9580343 |
attgaaattggcaaaagtattttatatgtttcccaaaacacttggtattttgtttcagttcacggtacttctcatttcttaaatcttgaaaagagttcga |
9580442 |
T |
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| Q |
118 |
attttgaattggttattgattctccctctatatttctttgatttttctcatagtcatagtcatgacaaaagtttactgaaagaaatgaagatatatgctg |
217 |
Q |
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| T |
9580443 |
attttgaattggttattgattctccctctatatttctttgatttttctcatagtcatagtcatgaaaaaagtttactgaaagaaatgaagatatatgctg |
9580542 |
T |
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| Q |
218 |
aggcaattattaggaatctaaatagccatataatcataaataagaatctaaataagaatat |
278 |
Q |
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| T |
9580543 |
aggcaattattaggaatctaaatagccatataatcataaataagaatctaaataagaatat |
9580603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 267 - 407
Target Start/End: Original strand, 9580623 - 9580763
Alignment:
| Q |
267 |
aaataagaatatgttattccttgtacttatgtccctcaggaaaagtcgtgtgagttactcatatacatgccagagtcgtgtgaattactatcgaatatcc |
366 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9580623 |
aaataagaatatgttattccttgtacttatgttcctcaggaaaagtcgtgtgagttactcatatacatgccagagtcgtgtgagttactatcgaatatcc |
9580722 |
T |
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| Q |
367 |
attaagataaactatactgacaatactttctctggcctatg |
407 |
Q |
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| T |
9580723 |
attaagataaactatactgacaatactttctctggcctatg |
9580763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 9394091 - 9393979
Alignment:
| Q |
20 |
tgaaattggcaaaagtattttatatgtttcccaaaagacttggtattttgtttcagttcacggtacttctcatgttttaaatcttgaaaagagttcgaat |
119 |
Q |
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|||||||||| |||| |||||||| ||||||| ||||||| ||||||||||||| |||||||||||| | | ||||| || ||||||||||||| ||| |
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| T |
9394091 |
tgaaattggctgaagtgttttatatatttcccacaagactttgtattttgtttcaattcacggtacttgtaaatttttatatattgaaaagagttcaaat |
9393992 |
T |
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| Q |
120 |
tttgaattggtta |
132 |
Q |
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|| ||||||||| |
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| T |
9393991 |
ttcaaattggtta |
9393979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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