View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11675_low_8 (Length: 298)
Name: NF11675_low_8
Description: NF11675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11675_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 123 - 291
Target Start/End: Complemental strand, 40810203 - 40810035
Alignment:
| Q |
123 |
gtacttttccaatgcagaaatcaggttacggttcagatggaatatacaggtccttaagaccttcccttatcttaccaaaaaatccaaacctctctctcgt |
222 |
Q |
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| T |
40810203 |
gtacttttccaatgcagaaatcaggttacggttcagatggaatatacaggtccttaagaccttcccttatcttaccaaaaaatccaaacctctctctcgt |
40810104 |
T |
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| Q |
223 |
aacacacctcttcaacaaagtcacttcttccccaaacaaaaccgctcttatagatgccgattcttctca |
291 |
Q |
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| T |
40810103 |
aacacacctcttcaacaaagtcacttcttccccaaacaaaaccgctcttatagatgccgattcttctca |
40810035 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 40810307 - 40810238
Alignment:
| Q |
19 |
atctcatacactagaatacaaaatacaaagacagcatcatcaccaaagcactagaaaatctctgtttgtt |
88 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40810307 |
atctgatacactagaatacaaaatacaaagacagcatcatcaccaaagcactagaaaatccctgtttgtt |
40810238 |
T |
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