View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11676_high_5 (Length: 239)
Name: NF11676_high_5
Description: NF11676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11676_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 11287316 - 11287362
Alignment:
| Q |
17 |
aagttctttcttttatctataaatgttacaaaatattcaaagggttg |
63 |
Q |
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| T |
11287316 |
aagttctttcttttatctataaatgttacaaaatattcaaagggttg |
11287362 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 11287380 - 11287422
Alignment:
| Q |
101 |
cccacaagttattttcattcaaagttactttctttcataatga |
143 |
Q |
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| T |
11287380 |
cccacaagttattttcattcaaagttactttctttcataatga |
11287422 |
T |
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