View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11676_high_6 (Length: 228)
Name: NF11676_high_6
Description: NF11676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11676_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 56164820 - 56164596
Alignment:
| Q |
1 |
caaacaggtttttcag---tttgagaacagtgagtgtcttgcaactaaaaatgctactggttaatccattaacatcctccaacctgtcaatgtctaggtt |
97 |
Q |
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| T |
56164820 |
caaacaggtttttcaacaatttgagaacagtgagtgtcttgcaactaaaaatgctactggttaatccattaacatcctccaacatgtcaatgtctaggtt |
56164721 |
T |
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| Q |
98 |
ttcaattcctctttgtattgctgcattaataaatctgttgatattgttgatgctgtattctttgccaaatttgaggcaaaatgatcgtattggcagcgtg |
197 |
Q |
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| T |
56164720 |
ttcaattcctctttgtattgctgcattaataaatctgttgatatcgttgatgctgtattctttgccaaatttgaggcaaagtgatcgtattggcagcgtg |
56164621 |
T |
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| Q |
198 |
atttctcgtgatacaatgaccaagt |
222 |
Q |
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| T |
56164620 |
atttctcgtgatacaatgaccaagt |
56164596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 44253525 - 44253419
Alignment:
| Q |
6 |
aggtttttcagtttgagaacagtgagtgtcttgcaactaaaaatgctactggttaatccattaacatcctccaacctgtcaatgtctaggttttcaattc |
105 |
Q |
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| T |
44253525 |
aggtttttcaatttgaggacagtgagtgtcttgcaactgaaaatgctatctgttaatccattaacattctccaacatgtcaatgtctagttcttcgattc |
44253426 |
T |
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| Q |
106 |
ctctttg |
112 |
Q |
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| T |
44253425 |
ctctttg |
44253419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 44258900 - 44258805
Alignment:
| Q |
96 |
ttttcaattcctctttgtattgctgcattaataaatctgttgatattgttgatgctgtattctttgccaaatttgaggcaaaatgatcgtattggcagcg |
195 |
Q |
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| T |
44258900 |
ttttccattcctctttgtattgctgcattaatgaatctgttca-----tcgatgtcgtattcattgccaaatttgaggcggagtgatcgtattggcagcg |
44258806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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