View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11676_high_8 (Length: 211)
Name: NF11676_high_8
Description: NF11676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11676_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 43349940 - 43349765
Alignment:
| Q |
13 |
gagagagatgaaaacgttaaaggagtgataagaagaaagaatcgttgtgaatgaaaagaagaacggaatagagaggatagtcaccgaggtaaatttcacc |
112 |
Q |
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| T |
43349940 |
gagagaaatgaaaacgttaaaggagtgataagaagaaagaatcgttgtgaatgaaaagaagaacggaatagagaggatagtcaccgaggtaaatttcacc |
43349841 |
T |
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| Q |
113 |
gaaggatccacttccgatcttgcggccgagcttgtagctgccgccaacgatgcgctccatgtttagaagaaggttc |
188 |
Q |
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| T |
43349840 |
gaaggatccacttccgatcttgcggccgagcttgtagctgccgccaacgatgcgctccatgtttagaagaaggttc |
43349765 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 33473090 - 33473049
Alignment:
| Q |
95 |
accgaggtaaatttcaccgaaggatccacttccgatcttgcg |
136 |
Q |
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| T |
33473090 |
accgagatagatttcaccgaaggatccacttccgatcttgcg |
33473049 |
T |
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