View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11676_low_1 (Length: 611)
Name: NF11676_low_1
Description: NF11676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11676_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Complemental strand, 8073196 - 8072612
Alignment:
| Q |
17 |
aagtagtaaagttaaagtaggtatagatattgcattggttgtgtacatacacactttcttctattctgttttttctgctcaacataagccgaaatctcct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8073196 |
aagtagtaaagttaaagtaggtatagatattgcattggttgtgtacatacacactttcttctattctgttttttctgctcaacataagccgaaatctcct |
8073097 |
T |
|
| Q |
117 |
cttgcttaaccagtgaatcctctaaagcctgacaaagcaaacaataacgactgttaaacttccatggaacgataaataagcattttagctttcatggaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8073096 |
cttgcttaaccagtgaatcctctaaagcctgacaaagcaaacaataacgactgttaaacttccatggaacgataaataagcattttagctttcatggaac |
8072997 |
T |
|
| Q |
217 |
tagcaaaacttaaagatcgatgattgtgttgagtatgactcgtattctctgataagtagtcagtcgatggagcatagtatttaaacacgtcattgtactt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8072996 |
tagcaaaacttaaagatcgatgattgtgttgagtatgactcgtattcgctgataagtagtcagtcgatggagcatagtatttaaacacgacattgtactt |
8072897 |
T |
|
| Q |
317 |
tgcaatcgcaagaattgcataatnnnnnnnctacatcaaccacttttctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgtt |
416 |
Q |
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|||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8072896 |
tgcaatcgtaagaattgcataatagaaaaactacatcagccactttgctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgtt |
8072797 |
T |
|
| Q |
417 |
ctggtgtgcattttatttatttgttttctttagaaccaaatatgctgatctaacatattgaataccttcttggtcgccaagagttctttttccaataaat |
516 |
Q |
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| T |
8072796 |
cttgtgtgcattttatttatttgttttctttagaaccaaatatgctgatctaacatattgaataccttcttggtcgccaagagttctttttccaataaat |
8072697 |
T |
|
| Q |
517 |
cagctcgattaatagtattatgtagcatttcctccttctcaggtggcattacaacaggctgatgattaatgtttgtcattctctg |
601 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8072696 |
cagctcgattaatagtattatgtagcatttcctccttctcaggtggcattacaacaggctgatgattaatgtttgtcattttctg |
8072612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 450
Target Start/End: Original strand, 4008795 - 4008896
Alignment:
| Q |
347 |
ctacatcaaccacttttctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttctggtgtgcattttatttatttgttttctt |
446 |
Q |
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||||| ||||||| | |||||||| |||||| ||||||||| | |||| |||||||||||| ||||||| | |||||| ||||||| | ||||||||| |
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| T |
4008795 |
ctacaacaaccaccctactgtcggagacgtagacacaattagccaaactttgtgatcaatca-ttgtgtttttctgtgca-tttatttttctgttttctt |
4008892 |
T |
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| Q |
447 |
taga |
450 |
Q |
| |
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|||| |
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| T |
4008893 |
taga |
4008896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 450
Target Start/End: Original strand, 47472497 - 47472589
Alignment:
| Q |
357 |
cacttttctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttctggtgtgcattttatttatttgttttctttaga |
450 |
Q |
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|||||| |||||||| ||||||| |||||| | | || ||||| |||||||| |||||| ||||||||| |||||||||||||||||||| |
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| T |
47472497 |
cactttgctgtcggagacgtaggaacaattgaccagattacgtgataaatcatttatgttcttctgtgcattt-atttatttgttttctttaga |
47472589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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