View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11676_low_2 (Length: 360)
Name: NF11676_low_2
Description: NF11676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11676_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 6528084 - 6527726
Alignment:
| Q |
1 |
agcaaaggttaatgctacatatagcgaaaaatttgtcccgaggatatcccgacactgacatgtgtactgagcgaattctagtacttagttccaaccaccc |
100 |
Q |
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| T |
6528084 |
agcaaaggttaatgctacatatagcgaaaaatttgtcccgaggatatcccgacactgacatgtgtattgagcaaattctagtacttagttccaaccaccc |
6527985 |
T |
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| Q |
101 |
atgtattgtgtgatatgaagatccaatggtgatgctacgttcgcaatgcattgtgaaagagtgttcgctatatatatagcaacactcaaaagcaaaatcc |
200 |
Q |
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| T |
6527984 |
atgtattgtgtgatatgaagatccaatggtgatgctacgttcgcaatgcattgtgaaagtgtgttcgctata--tatagcaacactcaaaagcaaaatcc |
6527887 |
T |
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| Q |
201 |
tcttgttgcaccatattgattttattaggcaattttcttgtgacactaatgtcat-aaaggacaatcgcaaaatggtcgaatgtttgacccgtcgtggct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6527886 |
tcttgttgcaccatattgattttattaggcaattttcttgtgacactaatgtcataaaaggacaattgcaaaatggtcgaatgtttgacccgtcgtggct |
6527787 |
T |
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| Q |
300 |
gtatataaaacgattagagtcccaatactaccaacaatctcaaacaatagtttatgtttcc |
360 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6527786 |
gtatataaaacgattagagtctcaatactaccaacaatctcaaacaatagtttatgtttcc |
6527726 |
T |
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