View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11676_low_7 (Length: 215)
Name: NF11676_low_7
Description: NF11676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11676_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 31050202 - 31050016
Alignment:
| Q |
14 |
ataggcataagtaccacgtaattattaactattagtgaaattatgtatacccttgtgatgacaagcttttaaaaatacgtgacaaaataaaaatttattt |
113 |
Q |
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| T |
31050202 |
ataggcataagtaccacgtaattattaactattagtgaaattatgtatacccttgtgatgacaagcttttaaaaatacgtgacaaaataaaaatttattt |
31050103 |
T |
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| Q |
114 |
tgcagggatacaataaagtcggtaagtaaaataagaatgtcacagccaaaaactttatatcgaagaaaaccagctccagttatggct |
200 |
Q |
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| T |
31050102 |
tgcagggatacaataaagtcggtaattaaaattagaatgtcacagccaaaaacttcatatcgaagaaaaccagctccagttatggct |
31050016 |
T |
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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 31107568 - 31107508
Alignment:
| Q |
140 |
taaaataagaatgtcacagccaaaaactttatatcgaagaaaaccagctccagttatggct |
200 |
Q |
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| T |
31107568 |
taaactaagaatgtcaccagcaaaaactttgaatagaagaaagccagctccagttatggct |
31107508 |
T |
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