View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11677_high_5 (Length: 246)
Name: NF11677_high_5
Description: NF11677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11677_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26609023 - 26609250
Alignment:
| Q |
1 |
aacaattaccaatggtgggaggctattcctcatagtatcttgaatgtatttactacgaaataattgatctacctgagcataaattttgttaactttttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26609023 |
aacaattaccaatggtgggaggctattcctcataatatcttgaatgtatttactacgaaataattgatctacctgagcataaattttgttaactttttat |
26609122 |
T |
|
| Q |
101 |
ttgttgagcattaccctcgttttctcttcaccttggttttatcccactaaattttacaaataagg-ttttaataagacaattgattatgcatcttttgtg |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26609123 |
ttgttgagcattacactcgttttctcttcaccttggttttatcccactaaattttacagataaggtttttaataagacaattgattatgcatcttttgtg |
26609222 |
T |
|
| Q |
200 |
catcattgggttttgaaatagtccaccc |
227 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |
|
|
| T |
26609223 |
catcattgggctttgacatagtccaccc |
26609250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 26621579 - 26621787
Alignment:
| Q |
1 |
aacaattaccaatggtgggaggctattcctcatagtatcttgaatgtatttactacgaaataattgatctacctgagcataaattttgttaactttttat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||| | |
|
|
| T |
26621579 |
aacaactaccaatggtgggaggctattcctcatagtttcttgaatgtatttactatgaatgaattgatctaccttagcataaattttgctaactttttgt |
26621678 |
T |
|
| Q |
101 |
tt--gttgagcattaccctcgttttctcttcaccttggttttatcccactaaattttacaaataaggttt----taataagacaattgattatgcatctt |
194 |
Q |
| |
|
|| |||||||| ||| |||| ||||||||||||||||||||||| || ||| ||||| | |||||||| | ||||||||||||||||||| |||| |
|
|
| T |
26621679 |
ttgggttgagcactacactcggtttctcttcaccttggttttatctcagtaagttttataggtaaggtttttaattataagacaattgattatgcttctt |
26621778 |
T |
|
| Q |
195 |
ttgtgcatc |
203 |
Q |
| |
|
|| |||||| |
|
|
| T |
26621779 |
ttatgcatc |
26621787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26619594 - 26619709
Alignment:
| Q |
1 |
aacaattaccaatggtgggaggctattcctcatagtat------cttgaatgtatttactacgaaataattgatctacctgagcataaattttgttaact |
94 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
26619594 |
aacaattgtcaatggtgggaggctattcctcatagtattattatcttgaatgtatttactacgaaagaattgatctacctgagcataaatttagttaact |
26619693 |
T |
|
| Q |
95 |
ttttatttgttgagca |
110 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
26619694 |
ttttgtttattgagca |
26619709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University