View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11677_low_1 (Length: 444)

Name: NF11677_low_1
Description: NF11677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11677_low_1
NF11677_low_1
[»] chr8 (7 HSPs)
chr8 (261-444)||(3658166-3658344)
chr8 (343-387)||(13397621-13397665)
chr8 (343-387)||(13403176-13403220)
chr8 (343-386)||(29447044-29447087)
chr8 (343-386)||(36450699-36450742)
chr8 (343-386)||(44067598-44067641)
chr8 (349-387)||(31557066-31557104)
[»] chr1 (10 HSPs)
chr1 (343-444)||(40747712-40747813)
chr1 (343-386)||(1704940-1704983)
chr1 (343-386)||(16297226-16297269)
chr1 (343-384)||(21365997-21366038)
chr1 (343-384)||(22515832-22515873)
chr1 (350-386)||(6612112-6612148)
chr1 (343-386)||(40258878-40258921)
chr1 (343-386)||(42359394-42359437)
chr1 (343-373)||(48415671-48415701)
chr1 (343-384)||(51410098-51410139)
[»] chr3 (15 HSPs)
chr3 (344-443)||(12704597-12704696)
chr3 (343-386)||(1389909-1389952)
chr3 (343-386)||(55401146-55401189)
chr3 (345-386)||(15999957-15999998)
chr3 (343-387)||(8789493-8789537)
chr3 (343-386)||(24204986-24205029)
chr3 (343-386)||(25775578-25775621)
chr3 (343-386)||(34185057-34185100)
chr3 (345-387)||(3631754-3631796)
chr3 (407-444)||(25892479-25892516)
chr3 (338-386)||(4987220-4987268)
chr3 (355-387)||(8412904-8412936)
chr3 (343-387)||(20503535-20503579)
chr3 (395-443)||(25326446-25326494)
chr3 (343-387)||(40993280-40993324)
[»] chr4 (16 HSPs)
chr4 (340-386)||(30838292-30838338)
chr4 (343-391)||(20633537-20633585)
chr4 (343-444)||(18513180-18513281)
chr4 (343-387)||(11931361-11931405)
chr4 (343-387)||(16073464-16073508)
chr4 (343-386)||(3947706-3947749)
chr4 (343-386)||(17876237-17876280)
chr4 (343-386)||(22440562-22440605)
chr4 (343-386)||(23292931-23292974)
chr4 (343-386)||(30982812-30982855)
chr4 (343-386)||(40965342-40965385)
chr4 (407-444)||(19230312-19230349)
chr4 (349-386)||(32910634-32910671)
chr4 (343-387)||(715550-715594)
chr4 (343-387)||(752876-752920)
chr4 (343-387)||(3064873-3064917)
[»] chr7 (13 HSPs)
chr7 (343-386)||(9778576-9778619)
chr7 (343-397)||(28155614-28155668)
chr7 (343-387)||(21880222-21880266)
chr7 (342-386)||(43250075-43250119)
chr7 (343-386)||(1433530-1433573)
chr7 (343-386)||(5409776-5409819)
chr7 (343-382)||(8842284-8842323)
chr7 (343-386)||(29763134-29763177)
chr7 (343-388)||(5307325-5307370)
chr7 (346-387)||(33994282-33994323)
chr7 (343-391)||(6490782-6490830)
chr7 (343-387)||(7438787-7438831)
chr7 (343-387)||(40287307-40287351)
[»] chr5 (6 HSPs)
chr5 (343-386)||(2436982-2437025)
chr5 (395-444)||(26205751-26205800)
chr5 (343-384)||(39698625-39698666)
chr5 (407-444)||(25863223-25863260)
chr5 (395-444)||(43554540-43554589)
chr5 (346-386)||(17088362-17088402)
[»] chr6 (13 HSPs)
chr6 (343-444)||(8389413-8389512)
chr6 (408-444)||(6299531-6299567)
chr6 (408-444)||(6306341-6306377)
chr6 (343-391)||(7938166-7938214)
chr6 (343-387)||(32978844-32978888)
chr6 (343-386)||(8776913-8776956)
chr6 (343-386)||(17841534-17841577)
chr6 (347-386)||(21395262-21395301)
chr6 (343-386)||(31385001-31385044)
chr6 (343-373)||(10649372-10649402)
chr6 (395-444)||(17168454-17168503)
chr6 (343-387)||(4878013-4878056)
chr6 (343-387)||(13360318-13360362)
[»] chr2 (8 HSPs)
chr2 (343-387)||(2438664-2438708)
chr2 (343-386)||(37419825-37419868)
chr2 (343-373)||(18255949-18255979)
chr2 (407-444)||(25544500-25544537)
chr2 (343-387)||(18840958-18841002)
chr2 (342-386)||(23058388-23058432)
chr2 (331-387)||(36756266-36756322)
chr2 (343-391)||(42832237-42832285)
[»] scaffold0361 (1 HSPs)
scaffold0361 (343-386)||(14598-14641)
[»] scaffold0009 (1 HSPs)
scaffold0009 (345-384)||(188473-188512)
[»] scaffold0007 (1 HSPs)
scaffold0007 (399-444)||(225263-225308)
[»] scaffold0793 (1 HSPs)
scaffold0793 (343-387)||(4826-4870)
[»] scaffold0136 (1 HSPs)
scaffold0136 (343-387)||(3783-3827)
[»] scaffold0008 (1 HSPs)
scaffold0008 (346-378)||(263309-263341)
[»] scaffold0004 (1 HSPs)
scaffold0004 (343-387)||(92892-92936)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 261 - 444
Target Start/End: Complemental strand, 3658344 - 3658166
Alignment:
Q  261 tttagaccaagttgtgtgttaaatttagttatttgcatgtaaataattgttctgattttcattttacttgtaaagattaattaagcacggacactccttg 360  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    || |||||||||||||||| |    
T  3658344 tttacaccaagttgtgtgttaaatttagttatttgcatgtaaataattgttctgattttcattttacttg--aagt---atgaagcacggacactcctcg 3658250  T
Q  361 gattaggcgtgtcttggtgtcggacatcgacgcttgtccgacatcaacacgacacctataattacattgaattatatcattttc 444  Q
     ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |||| || || ||||||    
T  3658249 aattaggcgtgtcttgatgtcggacatcgacgcgtgtccgacatcaacacgacacctatgattacactgaactacattattttc 3658166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 13397665 - 13397621
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||    
T  13397665 aagcacggacactccttgaattaggcgtgtctcggtgtcggacat 13397621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 13403220 - 13403176
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||    
T  13403220 aagcacggacactccttgaattaagcgtgtctcggtgtcggacat 13403176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 29447044 - 29447087
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||    
T  29447044 aagcacggacactcctaggattaggcgtgtcctggtgtcagaca 29447087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 36450699 - 36450742
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||    
T  36450699 aagcacagacactcctcggattaggcgtgtcctggtgtcggaca 36450742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 44067641 - 44067598
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| | |||||||||||| ||||||||||||    
T  44067641 aagcacggacactcctcgaattaggcgtgtcctggtgtcggaca 44067598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Complemental strand, 31557104 - 31557066
Alignment:
Q  349 ggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  31557104 ggacacaccttggattaggcgtgtcctggtgtcggacat 31557066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 444
Target Start/End: Original strand, 40747712 - 40747813
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgacgcttgtccgacatcaacacgacacctataattacattgaattatatcattt 442  Q
    |||||||||| ||||| |||||||| |||||   |||| |||||| ||    ||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  40747712 aagcacggacgctcctcggattaggggtgtccctgtgtgggacatggatcggtgtccgacaccaacatgacacctataattacattgaattatgtcattt 40747811  T
Q  443 tc 444  Q
    ||    
T  40747812 tc 40747813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 1704940 - 1704983
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    ||||| |||||||||||||||||||||||||| |||||||||||    
T  1704940 aagcatggacactccttggattaggcgtgtctcggtgtcggaca 1704983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 16297226 - 16297269
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  16297226 aagcacggacactcctcggattaggcgtgtcctggtgtcggaca 16297269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 21365997 - 21366038
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcgga 384  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  21365997 aagcacggacactcctcggattaggcgtgtctcggtgtcgga 21366038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 22515832 - 22515873
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcgga 384  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  22515832 aagcacggacactcctcggattaggcgtgtctcggtgtcgga 22515873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 6612112 - 6612148
Alignment:
Q  350 gacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6612112 gacactccttggattaggcgtgtcctggtgtcggaca 6612148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 40258878 - 40258921
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||    
T  40258878 aagcatggacactcctcggattaggcgtgtcctggtgtcggaca 40258921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 42359394 - 42359437
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  42359394 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 42359437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 373
Target Start/End: Original strand, 48415671 - 48415701
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtc 373  Q
    |||||||||||||||||||||||||||||||    
T  48415671 aagcacggacactccttggattaggcgtgtc 48415701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 51410139 - 51410098
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcgga 384  Q
    ||||||| | |||||||||||||||||||||| |||||||||    
T  51410139 aagcacgaatactccttggattaggcgtgtctcggtgtcgga 51410098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 443
Target Start/End: Original strand, 12704597 - 12704696
Alignment:
Q  344 agcacggacactccttggattaggcgtgtcttggtgtcggacat-cgacgcttgtccgacatcaacacgacacctataattacattgaattatatcattt 442  Q
    ||||||||||||||| ||||||| |||||  ||||||||||||| ||  | | |||||||| | ||||||||||||| ||||||||||||||| ||||||    
T  12704597 agcacggacactcctaggattagacgtgttctggtgtcggacatgcgttggt-gtccgacaccgacacgacacctatgattacattgaattatgtcattt 12704695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 1389952 - 1389909
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  1389952 aagcacggacactccttggattaggcatgtcctggtgtcggaca 1389909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 55401189 - 55401146
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  55401189 aagcacggacactcctcggattaggcgtgtctcggtgtcggaca 55401146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 15999957 - 15999998
Alignment:
Q  345 gcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  15999957 gcacggacactccttggattaggcgtgtcccggtgtcggaca 15999998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 8789493 - 8789537
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||    
T  8789493 aagcacggacactcctcggattaggcgtgtctcggtgtccgacat 8789537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 24204986 - 24205029
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| | |||||||||||| ||||||||||||    
T  24204986 aagcacggacactcctcgaattaggcgtgtcctggtgtcggaca 24205029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 25775621 - 25775578
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  25775621 aagcacgaacactcctcggattaggcgtgtcctggtgtcggaca 25775578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 34185057 - 34185100
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  34185057 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 34185100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 3631796 - 3631754
Alignment:
Q  345 gcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||| ||| |||||||||| |||||||||||||    
T  3631796 gcacggacactcctcggactaggcgtgtcctggtgtcggacat 3631754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 444
Target Start/End: Complemental strand, 25892516 - 25892479
Alignment:
Q  407 acacgacacctataattacattgaattatatcattttc 444  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  25892516 acacgacacctatgattacactgaattatatcattttc 25892479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 4987220 - 4987268
Alignment:
Q  338 taattaagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||| ||| |||||||||||| ||||||||||||||  |||||||||||    
T  4987220 taatgaagtacggacactcctcggattaggcgtgtcccggtgtcggaca 4987268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 8412904 - 8412936
Alignment:
Q  355 tccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||| ||||||||||||||||||    
T  8412904 tccttggattaggcatgtcttggtgtcggacat 8412936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 20503579 - 20503535
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| ||||||||||||||  |||||| |||||    
T  20503579 aagcacggacactcctcggattaggcgtgtcccggtgtcagacat 20503535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 25326494 - 25326446
Alignment:
Q  395 tgtccgacatcaacacgacacctataattacattgaattatatcatttt 443  Q
    ||||||||| |||||||||| ||||||||||| | |||||||| |||||    
T  25326494 tgtccgacaccaacacgacatctataattacactaaattatattatttt 25326446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 40993280 - 40993324
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    ||||| |||||||||| ||||||||||||||  ||||||||||||    
T  40993280 aagcatggacactcctcggattaggcgtgtcccggtgtcggacat 40993324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 30838338 - 30838292
Alignment:
Q  340 attaagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  30838338 attaagcacggacactcctcgggttaggcgtgtcttggtgtcggaca 30838292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 20633585 - 20633537
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgac 391  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  20633585 aagcacgaacactccttggattaggcgtgtcttggtgtccgacaccgac 20633537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 444
Target Start/End: Original strand, 18513180 - 18513281
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca-tcgacgcttgtccgacatcaacac-gacacctataattacattgaattatatcat 440  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||  || ||  ||||||||| |||||| ||||| ||| ||||||||||||||| ||||    
T  18513180 aagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcg-gtgtccgaca-caacactgacacatatgattacattgaattatgtcat 18513277  T
Q  441 tttc 444  Q
    ||||    
T  18513278 tttc 18513281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 11931405 - 11931361
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||    
T  11931405 aagcacggacactccatggattaggtgtgtcctggtgtcggacat 11931361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 16073508 - 16073464
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||    
T  16073508 aagcatggacactcctcggattaggcgtgtcttagtgtcggacat 16073464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 3947706 - 3947749
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||    
T  3947706 aagcacggacactcctcggattaggtgtgtcctggtgtcggaca 3947749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 17876280 - 17876237
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||    
T  17876280 aagcacagacactccttggattaggtgtgtcctggtgtcggaca 17876237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 22440562 - 22440605
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| |||||||||||||| | ||||||||||    
T  22440562 aagcacggacactcctcggattaggcgtgtcctagtgtcggaca 22440605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 23292931 - 23292974
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  23292931 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 23292974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 30982812 - 30982855
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||| ||||||||||||||||  |||||||||||    
T  30982812 aagcacggacactctttggattaggcgtgtcccggtgtcggaca 30982855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 40965385 - 40965342
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||| |||||||||  ||||||||||||||||||||||||||    
T  40965385 aagcaccgacactcctcagattaggcgtgtcttggtgtcggaca 40965342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 444
Target Start/End: Original strand, 19230312 - 19230349
Alignment:
Q  407 acacgacacctataattacattgaattatatcattttc 444  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  19230312 acacgacacctataattacattgaattatgttattttc 19230349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 386
Target Start/End: Complemental strand, 32910671 - 32910634
Alignment:
Q  349 ggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  32910671 ggacactcctcggattaggcgtgtcatggtgtcggaca 32910634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 715550 - 715594
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| ||||||||||||||   |||||||||||    
T  715550 aagcacggacactcctcggattaggcgtgtccctgtgtcggacat 715594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 752876 - 752920
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| ||||||||||||||   |||||||||||    
T  752876 aagcacggacactcctcggattaggcgtgtccctgtgtcggacat 752920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 3064873 - 3064917
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| |||||||||||||||  | |||||||||    
T  3064873 aagcacggacactcctcggattaggcgtgtctcagagtcggacat 3064917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 9778619 - 9778576
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  9778619 aagcacggacactccttggattaggcgtgtcccggtgtcggaca 9778576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 28155668 - 28155614
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgacgcttgt 397  Q
    ||||||||||| ||||||||||||||||||| ||||||| |||| |||| |||||    
T  28155668 aagcacggacattccttggattaggcgtgtcctggtgtccgacaccgacacttgt 28155614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 21880266 - 21880222
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    ||||||||||||| || |||||||||||||| |||||||||||||    
T  21880266 aagcacggacacttctcggattaggcgtgtcctggtgtcggacat 21880222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 43250119 - 43250075
Alignment:
Q  342 taagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||    
T  43250119 taagcacggacactcctcgaattaggcgtgtcctggtgtcggaca 43250075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 1433573 - 1433530
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||    
T  1433573 aagcacggacactcctcggattagacgtgtcctggtgtcggaca 1433530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 5409776 - 5409819
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  5409776 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 5409819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 8842284 - 8842323
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcg 382  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  8842284 aagcacggacactccttggattaggcgtgtcccggtgtcg 8842323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 29763134 - 29763177
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| |||||||||||||| || |||||||||    
T  29763134 aagcacggacactcctcggattaggcgtgtcctgatgtcggaca 29763177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 5307370 - 5307325
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacatc 388  Q
    ||||||| ||||||||||||||||||||||| | |||||| |||||    
T  5307370 aagcacgtacactccttggattaggcgtgtcctagtgtcgcacatc 5307325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 33994323 - 33994282
Alignment:
Q  346 cacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||| |||||||||||||||||||||||| ||||| ||||||    
T  33994323 cacgaacactccttggattaggcgtgtctcggtgttggacat 33994282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 6490830 - 6490782
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgac 391  Q
    |||||||||||||||| |||||| |||||||  ||||||||||| ||||    
T  6490830 aagcacggacactcctcggattaagcgtgtcccggtgtcggacaccgac 6490782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 7438831 - 7438787
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||||| |||||||||||| | |||||| ||||    
T  7438831 aagcacggacactccttgaattaggcgtgtcctagtgtcgcacat 7438787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 40287307 - 40287351
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||||    
T  40287307 aagcacggacactcctcggattaggcatgtcccggtgtcggacat 40287351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 2437025 - 2436982
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    ||||||| |||||||| |||||||||||||||||||||||||||    
T  2437025 aagcacgaacactcctcggattaggcgtgtcttggtgtcggaca 2436982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 26205751 - 26205800
Alignment:
Q  395 tgtccgacatcaacacgacacctataattacattgaattatatcattttc 444  Q
    ||||||||| ||||||||||||||| |||||| |||||||| ||||||||    
T  26205751 tgtccgacaccaacacgacacctatgattacactgaattatgtcattttc 26205800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 39698666 - 39698625
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcgga 384  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  39698666 aagcacggacactcctcggattaggcgtgtctcggtgtcgga 39698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 444
Target Start/End: Complemental strand, 25863260 - 25863223
Alignment:
Q  407 acacgacacctataattacattgaattatatcattttc 444  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  25863260 acacgacacttataattacactgaattatatcattttc 25863223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 43554589 - 43554540
Alignment:
Q  395 tgtccgacatcaacacgacacctataattacattgaattatatcattttc 444  Q
    ||||||||| | ||||||||||||| |||||| | |||||||||||||||    
T  43554589 tgtccgacaccgacacgacacctatgattacactaaattatatcattttc 43554540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 17088402 - 17088362
Alignment:
Q  346 cacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    ||||||||||||| ||||||||||||||  |||||||||||    
T  17088402 cacggacactcctcggattaggcgtgtcccggtgtcggaca 17088362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 444
Target Start/End: Original strand, 8389413 - 8389512
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgacgcttgtccgacatcaacacgacacctataattacattgaattatatcattt 442  Q
    |||||||||||||||| |||||||| |||||  ||||||||||| ||  | | |||||||| | ||| |||| ||||||||||| |||||||||| ||||    
T  8389413 aagcacggacactcctcggattaggtgtgtcccggtgtcggacaccg-tgttggtccgacaccgacatgaca-ctataattacactgaattatatgattt 8389510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 6299567 - 6299531
Alignment:
Q  408 cacgacacctataattacattgaattatatcattttc 444  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttc 6299531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 6306377 - 6306341
Alignment:
Q  408 cacgacacctataattacattgaattatatcattttc 444  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttc 6306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 7938214 - 7938166
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgac 391  Q
    |||||||||||||||| |||| |||||||||| ||||||||||| ||||    
T  7938214 aagcacggacactcctcggatcaggcgtgtctcggtgtcggacaccgac 7938166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 32978844 - 32978888
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||    
T  32978844 aagcacggacactccttggattagacgtgtcccggtgtcggacat 32978888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 8776913 - 8776956
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| |||||||| |||||| |||||||||||    
T  8776913 aagcacggacactcctcggattaggtgtgtctcggtgtcggaca 8776956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 17841534 - 17841577
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| |||||||||||||||  ||||||||||    
T  17841534 aagcacggacactcctcggattaggcgtgtctcagtgtcggaca 17841577  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Original strand, 21395262 - 21395301
Alignment:
Q  347 acggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  21395262 acggacactccttggattaggcgtgtcctggtgtccgaca 21395301  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 31385044 - 31385001
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||||||||||||||||||  ||||| |||||    
T  31385044 aagcacggacactccttggattaggcgtgtcccggtgtaggaca 31385001  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 373
Target Start/End: Complemental strand, 10649402 - 10649372
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtc 373  Q
    |||||||||||||||||||||||||||||||    
T  10649402 aagcacggacactccttggattaggcgtgtc 10649372  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 17168454 - 17168503
Alignment:
Q  395 tgtccgacatcaacacgacacctataattacattgaattatatcattttc 444  Q
    ||||||||| | ||||||||||||| |||||| | |||||||||||||||    
T  17168454 tgtccgacaccgacacgacacctattattacactaaattatatcattttc 17168503  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 4878056 - 4878013
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  4878056 aagcacggacactcctcggattaggcgtgtcct-gtgtcggacat 4878013  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 13360318 - 13360362
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||| | |||||||||||||||  |||||||||||    
T  13360318 aagcacggacactcttcggattaggcgtgtctcagtgtcggacat 13360362  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 2438664 - 2438708
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||    
T  2438664 aagcacggacactcctcggattaggcgtgtcccggtgtcggacat 2438708  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 37419868 - 37419825
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  37419868 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 37419825  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 373
Target Start/End: Original strand, 18255949 - 18255979
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtc 373  Q
    |||||||||||||||||||||||||||||||    
T  18255949 aagcacggacactccttggattaggcgtgtc 18255979  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 444
Target Start/End: Complemental strand, 25544537 - 25544500
Alignment:
Q  407 acacgacacctataattacattgaattatatcattttc 444  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  25544537 acacgacacctatgattacactgaattatatcattttc 25544500  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 18840958 - 18841002
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| |||||||| |||||  ||||||||||||    
T  18840958 aagcacggacactcctcggattaggtgtgtcccggtgtcggacat 18841002  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 23058388 - 23058432
Alignment:
Q  342 taagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    |||||||||||||| || ||||||||||||||  |||||||||||    
T  23058388 taagcacggacacttctcggattaggcgtgtcccggtgtcggaca 23058432  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 36756266 - 36756322
Alignment:
Q  331 taaagattaattaagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||| |||||| |||||| ||||||||| |||||||||||||   ||||||||||||    
T  36756266 taaatattaatgaagcacagacactcctaggattaggcgtgttgcggtgtcggacat 36756322  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 42832237 - 42832285
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgac 391  Q
    ||||| |||||||||||||||||||||||||  || |||||||| ||||    
T  42832237 aagcaaggacactccttggattaggcgtgtcccggagtcggacaccgac 42832285  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 14641 - 14598
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 386  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||    
T  14641 aagcacgtacactccttcgattaggcgtgtctcggtgtcggaca 14598  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 384
Target Start/End: Complemental strand, 188512 - 188473
Alignment:
Q  345 gcacggacactccttggattaggcgtgtcttggtgtcgga 384  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  188512 gcacggacactcctcggattaggcgtgtcctggtgtcgga 188473  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 225263 - 225308
Alignment:
Q  399 cgacatcaacacgacacctataattacattgaattatatcattttc 444  Q
    ||||| ||||||||||| ||||||||||||| ||||| ||||||||    
T  225263 cgacaccaacacgacacttataattacattgtattatgtcattttc 225308  T

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Target: scaffold0793 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 4826 - 4870
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| ||||||||||||||   |||||||||||    
T  4826 aagcacggacactcctcggattaggcgtgtccctgtgtcggacat 4870  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 3783 - 3827
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    ||||| |||||||||| ||||||||||||||| | ||||||||||    
T  3783 aagcaaggacactcctcggattaggcgtgtctcgatgtcggacat 3827  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 263309 - 263341
Alignment:
Q  346 cacggacactccttggattaggcgtgtcttggt 378  Q
    ||||||||||||| |||||||||||||||||||    
T  263309 cacggacactcctcggattaggcgtgtcttggt 263341  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 92936 - 92892
Alignment:
Q  343 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 387  Q
    |||||||||||||||| ||||||||||||||  |||||| |||||    
T  92936 aagcacggacactcctcggattaggcgtgtccaggtgtccgacat 92892  T

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