View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11677_low_4 (Length: 253)
Name: NF11677_low_4
Description: NF11677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11677_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 26609018 - 26608806
Alignment:
| Q |
1 |
tgatgcgaaggttggcaagcttgttagcgcattgagtgacttctctataaatgtgagacacggtgaaagttatctttatgtgaaagctacgcaatcgagt |
100 |
Q |
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| T |
26609018 |
tgatgcgaaggttggcaagcttgttagcgcattgagtgacttctctataaatgtgagacacgatgaaagttatctttatgtgaaagctacgcaatcgagt |
26608919 |
T |
|
| Q |
101 |
tatctattttaaaattcacaagaacaatagtatcaggtcatgaaagcaagattgatcaatcaaaagttagattcaagttatgagacaatgacatccattt |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26608918 |
catctattttaaaattcacaagaacaatggtatcaggtcatgaaagcaagattgatcaatcaaaagttagattcaagttatgagacaatgacatccattt |
26608819 |
T |
|
| Q |
201 |
ttataagctacac |
213 |
Q |
| |
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||||||||||||| |
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| T |
26608818 |
ttataagctacac |
26608806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 26619589 - 26619374
Alignment:
| Q |
1 |
tgatgcgaaggttggcaagcttgttagcgcattgagtgacttctct--ataaatgtgagacacggtgaaagttatctttatgtgaaagctacgcaatcga |
98 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| || |
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| T |
26619589 |
tgatgcaaaggttggcaagcttgttagcgcattgagtgacttctctctataaatgtgagacacgatgaaagttatctttatgtgagagctatgcaattga |
26619490 |
T |
|
| Q |
99 |
gttatctattt-taaaattcacaagaacaatagtatcaggtcatgaaagcaagattgatcaatcaaaagttagattcaagttatgagacaatgacatcca |
197 |
Q |
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| T |
26619489 |
gtcatctatttctaaaattcacaagaacaatagtattgggacatgaaagcaagattaatcaatcaagagttagattcaagtcatgagacaatgacatcca |
26619390 |
T |
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| Q |
198 |
tttttataagctacac |
213 |
Q |
| |
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||||||||||||||| |
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| T |
26619389 |
attttataagctacac |
26619374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 26621568 - 26621362
Alignment:
| Q |
7 |
gaaggttggcaagcttgttagcgcattgagtgacttctctataaatgtgagacacggtgaaagttatctttatgtgaaagctacgcaatcgagttatcta |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| ||||| | | ||||| |
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| T |
26621568 |
gaaggttggcaagcttgtgagcgcattgagtgacttctctataaatgtgagacacgatgaaagttatctttatgtgagacctacacaatcaaatcatcta |
26621469 |
T |
|
| Q |
107 |
ttt-taaaattcacaagaacaatagtatcaggtcatgaaagcaagattgatcaatcaaaagttagattcaagttatgagacaatgacatccatttttata |
205 |
Q |
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||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||| |||||||||| | ||||||||||||| |
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| T |
26621468 |
tttctaaaattcacaagaacaatagtat-gggacatgaaagcaagattgatcaattaaaagatagattcaagtcatgagacaataaaatccatttttata |
26621370 |
T |
|
| Q |
206 |
agctacac |
213 |
Q |
| |
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|||||||| |
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|
| T |
26621369 |
agctacac |
26621362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 26608801 - 26608749
Alignment:
| Q |
161 |
caaaagttagattcaagttatgagacaatgacatccatttttataagctacac |
213 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||||||||||| |||| |
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|
| T |
26608801 |
caaaagttagattcaagtcacgagacaatgacatccatttttataagcaacac |
26608749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 26621349 - 26621301
Alignment:
| Q |
165 |
agttagattcaagttatgagacaatgacatccatttttataagctacac |
213 |
Q |
| |
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||||||||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
26621349 |
agttagatttaagtaatgagacaatgacatccatttttataaactacac |
26621301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 26619366 - 26619316
Alignment:
| Q |
160 |
tcaaaagttagattcaagttatgagacaatgacatccatttttataagcta |
210 |
Q |
| |
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|||| |||||||||||||| | |||||||||||||| ||||||||||||| |
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| T |
26619366 |
tcaagagttagattcaagtcacaagacaatgacatccgtttttataagcta |
26619316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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