View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11678_high_9 (Length: 342)

Name: NF11678_high_9
Description: NF11678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11678_high_9
NF11678_high_9
[»] chr7 (45 HSPs)
chr7 (39-316)||(6726042-6726315)
chr7 (212-306)||(42532892-42532986)
chr7 (214-306)||(33719321-33719413)
chr7 (212-316)||(47456697-47456800)
chr7 (215-315)||(1321151-1321249)
chr7 (211-312)||(8745482-8745583)
chr7 (209-306)||(48058306-48058402)
chr7 (212-316)||(44755921-44756025)
chr7 (211-316)||(16828723-16828828)
chr7 (45-97)||(23826284-23826336)
chr7 (214-316)||(16954845-16954946)
chr7 (39-97)||(21505615-21505673)
chr7 (39-97)||(45697487-45697545)
chr7 (211-316)||(28534128-28534232)
chr7 (39-99)||(6726515-6726575)
chr7 (51-98)||(21748082-21748129)
chr7 (39-98)||(36580273-36580332)
chr7 (39-97)||(4049977-4050035)
chr7 (39-97)||(28350116-28350174)
chr7 (45-97)||(17876419-17876471)
chr7 (49-97)||(18504505-18504553)
chr7 (49-101)||(44312741-44312793)
chr7 (45-96)||(3247433-3247484)
chr7 (46-97)||(14247294-14247345)
chr7 (40-103)||(21939331-21939394)
chr7 (254-316)||(3478744-3478806)
chr7 (45-95)||(8074137-8074187)
chr7 (39-97)||(15348214-15348272)
chr7 (40-94)||(20185172-20185226)
chr7 (222-312)||(24324425-24324515)
chr7 (56-97)||(11373847-11373888)
chr7 (45-94)||(19645063-19645112)
chr7 (40-101)||(20505266-20505327)
chr7 (45-94)||(23746156-23746205)
chr7 (45-93)||(28785760-28785808)
chr7 (216-307)||(36674828-36674919)
chr7 (224-312)||(43235676-43235764)
chr7 (257-312)||(40292637-40292691)
chr7 (47-98)||(41243908-41243959)
chr7 (39-93)||(21505873-21505927)
chr7 (39-77)||(24432978-24433016)
chr7 (39-97)||(41243644-41243702)
chr7 (39-97)||(46266509-46266567)
chr7 (50-102)||(35793370-35793422)
chr7 (39-95)||(47909696-47909752)
[»] chr5 (38 HSPs)
chr5 (211-312)||(26405175-26405276)
chr5 (211-316)||(25992354-25992459)
chr5 (214-316)||(26045586-26045688)
chr5 (212-312)||(8297825-8297924)
chr5 (220-316)||(10175041-10175137)
chr5 (212-316)||(13953869-13953975)
chr5 (45-97)||(2974896-2974948)
chr5 (39-95)||(25910981-25911037)
chr5 (39-94)||(3999089-3999144)
chr5 (214-313)||(7194927-7195026)
chr5 (40-99)||(25364082-25364141)
chr5 (248-310)||(7391626-7391688)
chr5 (47-96)||(39574240-39574289)
chr5 (49-94)||(43098031-43098076)
chr5 (45-97)||(20512461-20512513)
chr5 (211-302)||(27713426-27713516)
chr5 (45-96)||(32391720-32391771)
chr5 (39-97)||(35166548-35166607)
chr5 (49-96)||(35877545-35877592)
chr5 (39-97)||(12406041-12406099)
chr5 (39-97)||(40276018-40276076)
chr5 (49-98)||(586678-586727)
chr5 (49-94)||(3333695-3333740)
chr5 (222-303)||(5187306-5187387)
chr5 (45-97)||(6130255-6130307)
chr5 (45-97)||(24779536-24779588)
chr5 (211-303)||(30097686-30097778)
chr5 (232-312)||(33109829-33109909)
chr5 (39-94)||(24134371-24134426)
chr5 (39-97)||(18403246-18403303)
chr5 (211-313)||(23426653-23426755)
chr5 (39-93)||(34319964-34320017)
chr5 (39-97)||(36798170-36798228)
chr5 (39-97)||(36798432-36798490)
chr5 (40-97)||(6464332-6464389)
chr5 (214-282)||(7682909-7682977)
chr5 (50-94)||(20629739-20629783)
chr5 (39-95)||(37897973-37898029)
[»] chr4 (40 HSPs)
chr4 (211-316)||(41117591-41117696)
chr4 (216-310)||(42719514-42719608)
chr4 (209-316)||(52009176-52009283)
chr4 (212-316)||(38636857-38636960)
chr4 (222-313)||(9262807-9262898)
chr4 (39-97)||(35393925-35393983)
chr4 (212-312)||(16832646-16832747)
chr4 (211-307)||(19814849-19814946)
chr4 (40-97)||(35383765-35383822)
chr4 (45-97)||(43074616-43074668)
chr4 (39-94)||(14449276-14449331)
chr4 (212-307)||(28967229-28967323)
chr4 (211-282)||(48098659-48098730)
chr4 (214-311)||(2061460-2061557)
chr4 (211-312)||(35947934-35948035)
chr4 (40-97)||(50769618-50769675)
chr4 (214-313)||(49747884-49747983)
chr4 (45-99)||(2653951-2654005)
chr4 (47-97)||(6614847-6614897)
chr4 (39-97)||(53312541-53312599)
chr4 (211-312)||(12296527-12296627)
chr4 (46-91)||(18937248-18937293)
chr4 (48-97)||(51371728-51371777)
chr4 (51-96)||(54983849-54983894)
chr4 (45-97)||(23759561-23759613)
chr4 (44-96)||(27978957-27979009)
chr4 (39-86)||(2837157-2837204)
chr4 (48-95)||(35615433-35615479)
chr4 (39-97)||(4796036-4796094)
chr4 (47-97)||(11824462-11824512)
chr4 (254-316)||(21983498-21983559)
chr4 (49-94)||(3658190-3658235)
chr4 (48-97)||(29697786-29697835)
chr4 (57-94)||(51362814-51362851)
chr4 (50-94)||(4411493-4411537)
chr4 (50-94)||(16292534-16292578)
chr4 (45-97)||(19909173-19909225)
chr4 (262-306)||(39419298-39419342)
chr4 (39-95)||(49185815-49185870)
chr4 (57-97)||(53924747-53924787)
[»] chr1 (42 HSPs)
chr1 (211-313)||(9312966-9313068)
chr1 (214-313)||(11439646-11439745)
chr1 (211-313)||(27102535-27102637)
chr1 (218-316)||(4431035-4431133)
chr1 (238-313)||(7451887-7451962)
chr1 (213-312)||(27905786-27905885)
chr1 (223-312)||(9557272-9557362)
chr1 (40-97)||(39642200-39642257)
chr1 (238-316)||(31290644-31290722)
chr1 (46-98)||(14979063-14979115)
chr1 (47-94)||(11050430-11050476)
chr1 (214-281)||(37200498-37200565)
chr1 (211-313)||(10785087-10785189)
chr1 (39-101)||(23891656-23891718)
chr1 (211-316)||(17033947-17034051)
chr1 (46-95)||(18632602-18632651)
chr1 (49-97)||(17760957-17761005)
chr1 (211-315)||(34775225-34775328)
chr1 (211-307)||(49820509-49820605)
chr1 (50-97)||(25486479-25486526)
chr1 (39-97)||(46573083-46573141)
chr1 (211-307)||(46768529-46768626)
chr1 (49-98)||(48319672-48319720)
chr1 (248-316)||(10605085-10605153)
chr1 (49-97)||(25085399-25085447)
chr1 (46-94)||(45739196-45739244)
chr1 (39-97)||(3377501-3377559)
chr1 (39-96)||(16874758-16874816)
chr1 (39-97)||(18216686-18216744)
chr1 (48-94)||(46912193-46912239)
chr1 (212-313)||(376433-376533)
chr1 (45-98)||(3377773-3377826)
chr1 (48-97)||(3612453-3612502)
chr1 (45-102)||(5287245-5287302)
chr1 (48-97)||(23220826-23220875)
chr1 (256-313)||(26602451-26602506)
chr1 (49-86)||(27864185-27864222)
chr1 (211-308)||(46603714-46603810)
chr1 (40-101)||(46895433-46895494)
chr1 (212-316)||(32863170-32863273)
chr1 (40-96)||(37008218-37008274)
chr1 (49-97)||(41915788-41915836)
[»] chr3 (43 HSPs)
chr3 (212-316)||(14893284-14893388)
chr3 (211-315)||(33143576-33143680)
chr3 (212-310)||(4171098-4171196)
chr3 (211-316)||(50518712-50518817)
chr3 (211-312)||(37123723-37123824)
chr3 (211-316)||(823020-823125)
chr3 (39-96)||(19404399-19404456)
chr3 (216-316)||(32010145-32010245)
chr3 (212-316)||(46358005-46358109)
chr3 (39-97)||(86820-86878)
chr3 (40-94)||(46226944-46226998)
chr3 (211-316)||(14280172-14280277)
chr3 (211-316)||(25648036-25648141)
chr3 (214-311)||(48892981-48893078)
chr3 (49-97)||(54718994-54719042)
chr3 (49-100)||(14856543-14856594)
chr3 (47-97)||(17773170-17773220)
chr3 (47-97)||(19074471-19074521)
chr3 (211-305)||(25594142-25594236)
chr3 (51-96)||(27178141-27178186)
chr3 (40-97)||(28204480-28204537)
chr3 (248-316)||(28937351-28937419)
chr3 (46-102)||(28944228-28944284)
chr3 (50-97)||(14349375-14349422)
chr3 (39-94)||(43747282-43747337)
chr3 (48-95)||(48348257-48348304)
chr3 (50-100)||(1814547-1814597)
chr3 (39-97)||(3193037-3193095)
chr3 (39-97)||(28712717-28712775)
chr3 (39-97)||(33329611-33329669)
chr3 (45-103)||(35359246-35359304)
chr3 (47-97)||(36677524-36677574)
chr3 (47-97)||(36687606-36687656)
chr3 (39-97)||(51315740-51315798)
chr3 (50-100)||(53184784-53184834)
chr3 (48-97)||(14340733-14340782)
chr3 (48-101)||(52008511-52008564)
chr3 (61-97)||(38958121-38958157)
chr3 (39-94)||(44586042-44586097)
chr3 (40-99)||(53254961-53255020)
chr3 (40-94)||(4474324-4474378)
chr3 (39-97)||(20432190-20432248)
chr3 (45-97)||(12759503-12759555)
[»] scaffold0050 (1 HSPs)
scaffold0050 (214-316)||(37063-37165)
[»] chr2 (50 HSPs)
chr2 (211-316)||(41086427-41086532)
chr2 (216-316)||(33533367-33533467)
chr2 (212-306)||(34230555-34230648)
chr2 (211-313)||(4975098-4975200)
chr2 (211-313)||(4993006-4993108)
chr2 (46-101)||(18709243-18709298)
chr2 (211-313)||(7696314-7696416)
chr2 (211-316)||(42802436-42802544)
chr2 (45-97)||(14489472-14489524)
chr2 (212-279)||(13337604-13337671)
chr2 (221-312)||(20572435-20572526)
chr2 (39-101)||(16043281-16043343)
chr2 (224-312)||(29139579-29139665)
chr2 (211-312)||(33788253-33788353)
chr2 (40-101)||(34679347-34679408)
chr2 (212-316)||(10173202-10173306)
chr2 (211-307)||(22884746-22884842)
chr2 (50-94)||(34761127-34761171)
chr2 (214-313)||(29997301-29997400)
chr2 (39-101)||(19895609-19895671)
chr2 (256-313)||(29487498-29487554)
chr2 (214-307)||(41113372-41113465)
chr2 (46-94)||(37431800-37431848)
chr2 (212-303)||(15817011-15817101)
chr2 (211-313)||(1269805-1269906)
chr2 (46-95)||(4925706-4925755)
chr2 (39-100)||(15023094-15023155)
chr2 (211-316)||(15361077-15361181)
chr2 (40-97)||(19206142-19206199)
chr2 (45-97)||(5362175-5362227)
chr2 (50-94)||(5470333-5470377)
chr2 (256-312)||(8793515-8793571)
chr2 (236-304)||(10772903-10772971)
chr2 (45-97)||(32969789-32969841)
chr2 (211-313)||(37770279-37770378)
chr2 (211-306)||(6173851-6173945)
chr2 (47-94)||(6510263-6510310)
chr2 (50-101)||(37803114-37803165)
chr2 (39-98)||(39918433-39918492)
chr2 (212-243)||(40360655-40360686)
chr2 (45-99)||(4576803-4576856)
chr2 (39-97)||(21358361-21358419)
chr2 (46-92)||(24472451-24472497)
chr2 (56-98)||(31827804-31827846)
chr2 (40-98)||(36176980-36177038)
chr2 (40-97)||(14816054-14816111)
chr2 (211-316)||(27740341-27740445)
chr2 (45-97)||(6592994-6593046)
chr2 (256-316)||(16960312-16960371)
chr2 (49-97)||(37803398-37803446)
[»] chr6 (23 HSPs)
chr6 (212-312)||(3880239-3880339)
chr6 (212-316)||(20701421-20701524)
chr6 (45-97)||(3579595-3579647)
chr6 (45-94)||(1377468-1377517)
chr6 (45-94)||(1385216-1385265)
chr6 (40-97)||(12766471-12766528)
chr6 (211-304)||(6860384-6860479)
chr6 (211-307)||(17278094-17278190)
chr6 (214-316)||(13423718-13423820)
chr6 (49-97)||(238930-238978)
chr6 (214-306)||(15120235-15120327)
chr6 (212-307)||(16180489-16180583)
chr6 (44-95)||(28011385-28011436)
chr6 (39-97)||(30349612-30349670)
chr6 (45-101)||(266118-266174)
chr6 (46-90)||(18030944-18030988)
chr6 (49-100)||(5003086-5003137)
chr6 (47-98)||(33401317-33401368)
chr6 (39-97)||(6036644-6036702)
chr6 (51-101)||(26601727-26601777)
chr6 (39-97)||(33399786-33399843)
chr6 (45-94)||(7504884-7504933)
chr6 (45-97)||(2853678-2853730)
[»] chr8 (29 HSPs)
chr8 (40-101)||(6807423-6807484)
chr8 (213-306)||(12197708-12197801)
chr8 (213-306)||(12442136-12442229)
chr8 (40-97)||(17070907-17070964)
chr8 (40-97)||(17577308-17577365)
chr8 (211-316)||(17656359-17656464)
chr8 (45-97)||(39889772-39889824)
chr8 (39-97)||(16982626-16982684)
chr8 (39-92)||(22192307-22192360)
chr8 (39-96)||(33298589-33298646)
chr8 (248-313)||(43312281-43312346)
chr8 (39-87)||(14880590-14880638)
chr8 (49-101)||(20228227-20228279)
chr8 (214-312)||(8862251-8862346)
chr8 (209-316)||(10248188-10248295)
chr8 (39-93)||(26824088-26824141)
chr8 (39-97)||(37813162-37813220)
chr8 (39-97)||(41487200-41487258)
chr8 (40-101)||(521520-521581)
chr8 (45-97)||(9762461-9762513)
chr8 (211-307)||(25184754-25184849)
chr8 (39-99)||(27545611-27545671)
chr8 (50-97)||(521709-521756)
chr8 (39-97)||(23702123-23702181)
chr8 (39-97)||(28349563-28349621)
chr8 (40-97)||(20853378-20853435)
chr8 (41-106)||(26889284-26889349)
chr8 (49-94)||(37263361-37263406)
chr8 (211-243)||(12789125-12789157)
[»] scaffold0063 (1 HSPs)
scaffold0063 (211-290)||(58481-58560)
[»] scaffold1384 (1 HSPs)
scaffold1384 (266-312)||(1286-1332)
[»] scaffold0248 (1 HSPs)
scaffold0248 (39-96)||(666-723)
[»] scaffold0062 (1 HSPs)
scaffold0062 (50-97)||(46076-46123)
[»] scaffold1458 (1 HSPs)
scaffold1458 (39-97)||(1471-1529)
[»] scaffold0515 (1 HSPs)
scaffold0515 (39-97)||(3639-3697)
[»] scaffold0306 (1 HSPs)
scaffold0306 (39-97)||(3639-3697)
[»] scaffold0119 (1 HSPs)
scaffold0119 (211-313)||(41796-41897)
[»] scaffold0166 (1 HSPs)
scaffold0166 (45-97)||(21919-21971)
[»] scaffold1088 (1 HSPs)
scaffold1088 (40-94)||(2022-2076)
[»] scaffold0194 (1 HSPs)
scaffold0194 (48-90)||(24900-24942)
[»] scaffold0417 (1 HSPs)
scaffold0417 (49-94)||(9603-9648)
[»] scaffold0025 (2 HSPs)
scaffold0025 (45-94)||(19603-19652)
scaffold0025 (57-97)||(19040-19080)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 39 - 316
Target Start/End: Complemental strand, 6726315 - 6726042
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaataatttatataattattttcttgtagcactttcgaat 138  Q
    ||||||||| |||||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6726315 cttagagggtcaaaatcgcaacttcgtgaaaggtagggg-cgaaaactgttattaagccaaaataatttatataattattttcttgtagcactttcgaat 6726217  T
Q  139 attatgatgtgaatcactagtatagtcactcttgtagcactag-atacaatgggatgtatgtctatatatatagggtgttccgcctatatacgacgtctt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    |||||||||||||||||||||||||||||| ||| ||    
T  6726216 attatgatgtgaatcactagtatagtcactcttgtagcactagtatacaatgggatata----tatatatatagggtgttccgcctatatacggcgtttt 6726121  T
Q  238 ttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttcaa 316  Q
    |||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6726120 ttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttgttgtttcaa 6726042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 42532986 - 42532892
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaattt 306  Q
    ||||||||||||||||||| || |||||| || || |||||||| ||||||||||||||||| |||||||| ||| ||||||| |||||||||||    
T  42532986 ggtgttccgcctatatacggcgccttttggttgtattctcagttccaccggtctctgttcgtcttgagcagggatttggttgtctaataaaattt 42532892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 33719321 - 33719413
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaattt 306  Q
    |||||||||||||| |  || | ||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  33719321 tgttccgcctatattcagcgccgtttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 47456800 - 47456697
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    ||||||||||||||||||  || ||||  ||| || | || ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||     
T  47456800 ggtgttccgcctatatactgcgcctttcatttgtattttctgtttcaccggtctctgttcgtcttgagcagagatctggtt-tttaataaaatttgttga 47456702  T
Q  312 ttcaa 316  Q
    |||||    
T  47456701 ttcaa 47456697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 1321151 - 1321249
Alignment:
Q  215 gttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttc 314  Q
    |||||||||||||||| |||| |  |||| || ||||||||||| || |||| |||||| ||||| |||||| |||||||||||||||||||||||||||    
T  1321151 gttccgcctatatacggcgtcgt--gtttgtattctcagtttcatcgatctccgttcgtcttgagtagagatgtggttgtttaataaaatttgttgtttc 1321248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 8745482 - 8745583
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||||| ||||| ||||||||| | ||||||||||| |||||||||||| ||||  || ||| || ||||||||||| ||||| ||    
T  8745482 gggtgttccgcctatatacggcgtctcttgtttctattttcagtttcaccagtctctgttcgtcttgaatagggatttgattgtttaataatatttgatg 8745581  T
Q  311 tt 312  Q
    ||    
T  8745582 tt 8745583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 306
Target Start/End: Complemental strand, 48058402 - 48058306
Alignment:
Q  209 tagggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaattt 306  Q
    |||||||||||||||||||| |||| |||| |||| || ||||  ||||||||||||||||| || |||||||||||| ||||| |||||||||||||    
T  48058402 tagggtgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctgtttgtcttgagcagagatatggtt-tttaataaaattt 48058306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 44755921 - 44756025
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    |||||| ||||||||||| ||| ||||||||| ||  || |||||||| | |||  |||||| |||||||| ||||| ||||||||||||||||||||||    
T  44755921 ggtgtttcgcctatatacaacgccttttgtttgtatgcttagtttcactgatcttcgttcgtcttgagcagggatctagttgtttaataaaatttgttgt 44756020  T
Q  312 ttcaa 316  Q
    |||||    
T  44756021 ttcaa 44756025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 16828828 - 16828723
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||||| ||  |||||||| || |||||||||||||||||| |||| || |||| |||||||| |  |||||||||  |||| |||    
T  16828828 gggtgttccgcctatatacggcgcattttgtttgtattctcagtttcaccggtctttgtttgtcttgaacagagatcagcatgtttaatattatttattg 16828729  T
Q  311 tttcaa 316  Q
    ||||||    
T  16828728 tttcaa 16828723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 23826284 - 23826336
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  23826284 gggccaaaatcgcaacttcgtgaaagttaggggacaaaaactgctattaagcc 23826336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 16954845 - 16954946
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    |||||||||||||||||  | ||||| ||| || |||||||||||||||||| |||| || |||| |||||||  || |||||||||| |||||||||||    
T  16954845 tgttccgcctatatacggtgccttttatttgta-tctcagtttcaccggtctttgtttgtcttgaacagagatgaggatgtttaataatatttgttgttt 16954943  T
Q  314 caa 316  Q
    |||    
T  16954944 caa 16954946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 21505673 - 21505615
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  21505673 cttaaagggcccaaattgcaacttcgtgaaagttaagggacgaaagctgctattaagcc 21505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 45697545 - 45697487
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||||    
T  45697545 cttagggggccaaaatcgcaacttcgagaaagttaggggacgaaaactgttattaagcc 45697487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 28534232 - 28534128
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||||| || ||||| ||| || ||||    |||||||||||||||||| ||||||| |||| ||||| |||||||||||||| ||    
T  28534232 gggtgttccgcctatatacggcgccttttatttgtattctctaaatcaccggtctctgttcgtcttgagcaaagatttggtt-tttaataaaatttgctg 28534134  T
Q  311 tttcaa 316  Q
     |||||    
T  28534133 attcaa 28534128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 6726515 - 6726575
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaa 99  Q
    ||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  6726515 cttagggggcctaaatcgcaacttcgtgaaagttaggggacaaaaacagctattaagccaa 6726575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 21748082 - 21748129
Alignment:
Q  51 aaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  21748082 aaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcca 21748129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 36580332 - 36580273
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    ||||| || |||||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  36580332 cttaggggaccaaaatcacaacttcgtgaaagttaggggccgaaaactgctattaagcca 36580273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 4049977 - 4050035
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||||||||||  ||||||||||||||||| ||| |||||||||||||||||||    
T  4049977 cttagggggccaaaatcacaacttcgtgaaagttaaggggcgaaaactgctattaagcc 4050035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 28350174 - 28350116
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| | |||||||||||||||||||| | |||||||||||||||||    
T  28350174 cttagggggccaaaatcgtaacttcgtgaaagttagggggctaaaactgctattaagcc 28350116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 17876419 - 17876471
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| | ||||||||||||||||||||  ||||||||||||||||||    
T  17876419 gggccaaaatcgtaacttcgtgaaagttagggggtgaaaactgctattaagcc 17876471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 18504505 - 18504553
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||||    
T  18504505 caaaatcgcaacttcatgaaagttaggggacgaaaactgttattaagcc 18504553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 44312793 - 44312741
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    |||||| |||||||||| ||||||||| ||||||||||| |||||||||||||    
T  44312793 caaaatcgcaacttcgtaaaagttaggagacgaaaactgttattaagccaaaa 44312741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 3247433 - 3247484
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    ||||||||||  |||||||||||||||||||||||||||| || ||||||||    
T  3247433 gggccaaaatcacaacttcgtgaaagttaggggacgaaaattgttattaagc 3247484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 14247345 - 14247294
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||  ||||||||||||||||||| | |||||||||||||||||||    
T  14247345 ggccaaaatcacaacttcgtgaaagttaggtggcgaaaactgctattaagcc 14247294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 21939331 - 21939394
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaata 103  Q
    |||| |||||||||| |||||||||||| | ||||||| | ||||||||||||||||| |||||    
T  21939331 ttagggggccaaaatcgcaacttcgtgatacttagggggccaaaactgctattaagcctaaata 21939394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 3478744 - 3478806
Alignment:
Q  254 tttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttcaa 316  Q
    ||||||||||||||||| || |||| ||| |||||||||||| ||||||||||| || |||||    
T  3478744 tttcaccggtctctgtttgtcttgatcagggatctggttgttaaataaaatttgctgattcaa 3478806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 8074137 - 8074187
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    |||| ||||| | |||||||||||||||||||| |||||||||||||||||    
T  8074137 gggctaaaatcgtaacttcgtgaaagttagggggcgaaaactgctattaag 8074187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 15348214 - 15348272
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||||  |||||| ||||||||||||||||||||||  ||| ||||||||||||||    
T  15348214 cttagaggatcaaaatcgcaacttcgtgaaagttagggggtgaatactgctattaagcc 15348272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 20185172 - 20185226
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||||| |||||||    
T  20185172 ttagggggtcaaaatcgcaacttcgtgaaagttagggggcgaaaactactattaa 20185226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 24324515 - 24324425
Alignment:
Q  222 ctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    ||||||| ||||| |||||||| || ||||| ||||| || ||||| ||||| ||||||| | || |  ||||||||||||||||||||||    
T  24324515 ctatatatgacgttttttgtttgtattctcactttcatcgatctctattcgtcttgagcaaatatataattgtttaataaaatttgttgtt 24324425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 11373888 - 11373847
Alignment:
Q  56 gcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  11373888 gcaacttcgtaaaagttagggggcgaaaactgctattaagcc 11373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 19645063 - 19645112
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||||||| |||||||||||||||||| ||| |||||| |||||||||    
T  19645063 gggccaaaatcgcaacttcgtgaaagttaaggggcgaaaattgctattaa 19645112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 20505266 - 20505327
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    |||| |||||||||| |||||||| | |||| ||||||  ||||||||||||||||||||||    
T  20505266 ttagggggccaaaatcgcaacttcataaaagctagggggtgaaaactgctattaagccaaaa 20505327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 23746156 - 23746205
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||| ||||| |||||||||| ||||||||||||||||| ||||||||||    
T  23746156 gggctaaaatcgcaacttcgtaaaagttaggggacgaaagctgctattaa 23746205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 28785808 - 28785760
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctatta 93  Q
    |||||||||| | |||||||||||||||||||| || ||||||||||||    
T  28785808 gggccaaaatcgtaacttcgtgaaagttagggggcggaaactgctatta 28785760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 36674828 - 36674919
Alignment:
Q  216 ttccgcctatatacgacgtcttttgtttctagtct-cagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    |||||||||||||||||| ||||||||| || ||| || |||||||| ||||||||||| |||||  |  |||| |||||||||||| |||||    
T  36674828 ttccgcctatatacgacgccttttgtttgta-tctccaatttcaccgatctctgttcgtcttgagtcggaatctagttgtttaataatatttg 36674919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 43235676 - 43235764
Alignment:
Q  224 atatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    |||||||| ||||||| ||| || | ||||||||| || | | ||||||| ||||| ||  |||||||| |||||||||||||||||||    
T  43235676 atatacgatgtcttttatttgtattttcagtttcatcgatttatgttcgtcttgagtaggaatctggttctttaataaaatttgttgtt 43235764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 40292691 - 40292637
Alignment:
Q  257 caccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    ||||||||||||||||| ||||| || |||||| || |||||||||||||||||||    
T  40292691 caccggtctctgttcgtcttgaggagggatctgatt-tttaataaaatttgttgtt 40292637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 41243908 - 41243959
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    |||||||| | ||||| |||||||||||||  ||||||||||||||||||||    
T  41243908 gccaaaatcgtaactttgtgaaagttagggaccgaaaactgctattaagcca 41243959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 21505873 - 21505927
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctatta 93  Q
    ||||| |||||||||| ||||||| |  ||||||||||||| |||||||||||||    
T  21505873 cttagggggccaaaatcgcaactttgaaaaagttaggggactaaaactgctatta 21505927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 24433016 - 24432978
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttagggg 77  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  24433016 cttagggggccaaaatcgcaacttcgtgaaagttagggg 24432978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 41243702 - 41243644
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||| ||||||||||||| |  ||||||||||| | |||||||||||||||||    
T  41243702 cttagggggctaaaattgcaactttggaaaagttagggggctaaaactgctattaagcc 41243644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 46266509 - 46266567
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||| ||||||||||||||| ||||| ||||||  | |||||||||||||||||    
T  46266509 cttaggggggcaaaattgcaacttcttgaaacttagggagctaaaactgctattaagcc 46266567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 35793422 - 35793370
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaat 102  Q
    ||||| |||||||| | ||| ||||||| | ||||||||||||||||||||||    
T  35793422 aaaatcgcaacttcctaaaatttagggggccaaaactgctattaagccaaaat 35793370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 47909752 - 47909696
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    ||||| |||| ||||| ||||||| | |||||||||||| | |||||||||||||||    
T  47909752 cttagggggctaaaatcgcaactttgggaaagttagggggctaaaactgctattaag 47909696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 211 - 312
Target Start/End: Complemental strand, 26405276 - 26405175
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||| |||||||||||| ||||||||| || |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  26405276 gggtgttccgactatatacgacgccttttgtttgtattctcagtttcaccggtctttgttcgtcttgagcagaaatctggttgtttaataaaatttgttg 26405177  T
Q  311 tt 312  Q
    ||    
T  26405176 tt 26405175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 25992354 - 25992459
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||||| |||||||| || ||||||||| || | ||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||    
T  25992354 gggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctgttcgtcttgagcagagatctggttgtttaataatatttgctg 25992453  T
Q  311 tttcaa 316  Q
     |||||    
T  25992454 attcaa 25992459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 26045688 - 26045586
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    ||||||| ||||||||| || ||||||||| ||  ||||  |||||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||    
T  26045688 tgttccgtctatatacggcgccttttgtttgtatgctcaacttcaccggtctctgttcgttttgagcattgatctagttgtttaataaaatttattgttt 26045589  T
Q  314 caa 316  Q
    |||    
T  26045588 caa 26045586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 8297825 - 8297924
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    |||||||||||||| ||| ||| ||||| ||| || |||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||| |||    
T  8297825 ggtgttccgcctatgtacaacgcctttt-tttgtattctcagtttcaccggtctctgttcgtcttgagtagagatctgattgttcaataaaatttgctgt 8297923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 316
Target Start/End: Original strand, 10175041 - 10175137
Alignment:
Q  220 gcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttcaa 316  Q
    |||||||||||| | ||||||||| || ||| | |||||||||||||||||| ||||||| |  |||||||||| ||||||||||||||| ||||||    
T  10175041 gcctatatacgatgccttttgtttgtattcttaatttcaccggtctctgttcattttgagtaaggatctggttgattaataaaatttgttctttcaa 10175137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 13953975 - 13953869
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcac--cggtctctgttcgttttgagcagagatctggttgtttaataaaatttgtt 309  Q
    ||||||||||||||||||| || |||| |||| || ||||||||||||  |||||||||||||| ||||||||||| ||||  ||| ||||||||||| |    
T  13953975 ggtgttccgcctatatacggcgcctttagtttgtactctcagtttcacaccggtctctgttcgtcttgagcagagacctggaggttaaataaaatttgct 13953876  T
Q  310 gtttcaa 316  Q
     ||||||    
T  13953875 atttcaa 13953869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 2974896 - 2974948
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||||||    
T  2974896 gggccaaaatcgcaacttcgtgaaagttagggggcaaaaactgctattaagcc 2974948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 25910981 - 25911037
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    |||||||||| |||||  ||||||||||||||||||||| |||||||||||||||||    
T  25910981 cttagagggctaaaatctcaacttcgtgaaagttagggggcgaaaactgctattaag 25911037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 3999144 - 3999089
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||    
T  3999144 cttagggggtcaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaa 3999089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 7195026 - 7194927
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    |||||||| |||| |||||   |||||| | || ||||||||||| || ||| ||||||| ||||| || |||||||||||||||||||||||| |||||    
T  7195026 tgttccgcatataaacgactcattttgtctatattctcagtttcatcgatctttgttcgtcttgagtagggatctggttgtttaataaaatttgctgttt 7194927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 25364082 - 25364141
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaa 99  Q
    |||| |||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||    
T  25364082 ttagggggccaaaattgcaacttcgtgaaagttagagggtgaaaactgctattaaaccaa 25364141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 7391688 - 7391626
Alignment:
Q  248 tctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||| |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||||    
T  7391688 tctcattttcaccggtctctgttcgtcttgaacagagatctgatgatttaataaaatttgttg 7391626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 39574289 - 39574240
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  39574289 gccaaaatcgcaacttcgtgaaagttagagggcgaaaactgctattaagc 39574240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 43098076 - 43098031
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||    
T  43098076 caaaatcgcaacttcgtaaaagttaggggacgaaaactgctattaa 43098031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 20512461 - 20512513
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||||||||||||||| | | |||||||||||||||||||    
T  20512461 gggccaaaatcgcaacttcgtgaaagttaagaggcgaaaactgctattaagcc 20512513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 27713426 - 27713516
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaa 302  Q
    |||||||||||||||||| | || |||| |||| ||  ||||||||||| |||||| |||||| |||| ||| ||||||||| |||||||||    
T  27713426 gggtgttccgcctatatatggcgcctttcgtttgtatcctcagtttcactggtctcagttcgtcttgaacagggatctggtt-tttaataaa 27713516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 32391771 - 32391720
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    ||||||||||  ||||||||||||||||| ||| ||||||||||||||||||    
T  32391771 gggccaaaatcacaacttcgtgaaagttaaggggcgaaaactgctattaagc 32391720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 35166548 - 35166607
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagtta-ggggacgaaaactgctattaagcc 97  Q
    ||||| || ||||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  35166548 cttaggggaccaaaatcgcaacttcgtgaaagttaggggggcgaaaactgctattaagcc 35166607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 35877545 - 35877592
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||    
T  35877545 caaaattgcaacctcgtgaaagttagggggtgaaaactgctattaagc 35877592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 12406099 - 12406041
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| ||||||| | |||||||||||| | |||||||||||||||||    
T  12406099 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcc 12406041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 40276076 - 40276018
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| ||||| ||||||||  |||||||||||| ||||||||| |||||||||    
T  40276076 cttagagggctaaaatcgcaacttcacgaaagttaggggccgaaaactgatattaagcc 40276018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 586678 - 586727
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    |||||| |||||||| |||||||||| ||||||||| |||||||||||||    
T  586678 caaaatcgcaacttcatgaaagttagaggacgaaaattgctattaagcca 586727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 3333740 - 3333695
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||||    
T  3333740 caaaatcgcaacttcatgaaagttagggggcgaaaactgctattaa 3333695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 5187306 - 5187387
Alignment:
Q  222 ctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaa 303  Q
    |||||| || || ||||||||| || ||||| |||||||| |||||| || | |||||||||||| | ||||||||||||||    
T  5187306 ctatatgcggcgccttttgtttgtattctcaatttcaccgatctctgctcttcttgagcagagatttagttgtttaataaaa 5187387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 6130307 - 6130255
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||| |||||||||||||||| |||||||  |||||| ||||||||||||    
T  6130307 gggccaacattgcaacttcgtgaatgttagggagcgaaaattgctattaagcc 6130255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 24779536 - 24779588
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||  | | |||||||||||||||||||||||||||||||    
T  24779536 gggccaaaatcgcaacagcataaaagttaggggacgaaaactgctattaagcc 24779588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 30097686 - 30097778
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaa 303  Q
    |||||||||||||||||||| ||||||| |||| || |||    || |||||||| ||||||| || |||||| |||| ||||||||| ||||    
T  30097686 gggtgttccgcctatatacggcgtctttagtttgtattctttaatttaccggtctttgttcgtcttaagcagaaatctagttgtttaaaaaaa 30097778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 33109909 - 33109829
Alignment:
Q  232 cgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    |||||||||||| || |||||||||||||  | | ||||||| || ||||||||| || ||||||||||| ||||| ||||    
T  33109909 cgtcttttgtttgtattctcagtttcaccaatttatgttcgtcttaagcagagatttgattgtttaataatatttgctgtt 33109829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 24134426 - 24134371
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| |||||||||||||||||| |  ||| |||||||||||||||||| |||||    
T  24134426 cttagggggccaaaattgcaactttgaaaaaattaggggacgaaaactgcaattaa 24134371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 18403246 - 18403303
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| |||||| | ||||||||||| | |||||||||||||||||||    
T  18403246 cttagggggccaaaatcgcaact-catgaaagttaggtggcgaaaactgctattaagcc 18403303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 23426653 - 23426755
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||||| |  |||||  || || |||| |  |||||||||||||||| | ||||||||  ||||| || || ||||||||||| ||    
T  23426653 gggtgttccgcctatatacggcaccttttagttgtattctctgaatcaccggtctctgttcctcttgagcagcaatctgatttttaaataaaatttgctg 23426752  T
Q  311 ttt 313  Q
    |||    
T  23426753 ttt 23426755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 34320017 - 34319964
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctatta 93  Q
    ||||| |||||||||| ||||||||  |||||||||||| |||||||||||||||    
T  34320017 cttagggggccaaaatcgcaacttcaagaaagttagggg-cgaaaactgctatta 34319964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 36798228 - 36798170
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||||||||||| |  ||||||| ||| | |||||||||||||||||    
T  36798228 cttagggggccaaaattgcaactttggaaaagttaagggtctaaaactgctattaagcc 36798170  T

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Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 36798432 - 36798490
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| || ||||||| ||||||| | |||||||||||| | |||||||||||||||||    
T  36798432 cttaggggaccaaaatcgcaactttgagaaagttagggggctaaaactgctattaagcc 36798490  T

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Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 6464332 - 6464389
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| |||||||||| |||||||| |||||  |||||| | |||||||||||||||||    
T  6464332 ttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcc 6464389  T

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Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 7682909 - 7682977
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcag 282  Q
    |||||||||||||||||||| ||||  ||| || ||||||||||||| ||||   ||||| ||||||||    
T  7682909 tgttccgcctatatacgacgcctttaatttgtattctcagtttcacccgtctacattcgtcttgagcag 7682977  T

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Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 20629783 - 20629739
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| ||||||| |||||||||| ||| ||||||||||||||||    
T  20629783 aaaatcgcaactttgtgaaagttaaggggcgaaaactgctattaa 20629739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 37897973 - 37898029
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    ||||| |||||||||| ||||||| |  ||||||||||| | |||||||||||||||    
T  37897973 cttagggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctattaag 37898029  T

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Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 41117696 - 41117591
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||||||||||||||| | || |||||| |||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  41117696 gggtgttccgcctatatacgatgcctcttgtttgtagtctcaatttcacctgtctctgttcgtcttgagcagagatctagttgtttaataaaatttgttg 41117597  T
Q  311 tttcaa 316  Q
    ||||||    
T  41117596 tttcaa 41117591  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 42719514 - 42719608
Alignment:
Q  216 ttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||| |||||||| |||||||||||| || |||||||||||||||||||| ||||| |||||||| ||| || ||||||||||||||||||||    
T  42719514 ttccgcttatatacggcgtcttttgtttgtattctcagtttcaccggtctctattcgtcttgagcagggatttgattgtttaataaaatttgttg 42719608  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 209 - 316
Target Start/End: Original strand, 52009176 - 52009283
Alignment:
Q  209 tagggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgt 308  Q
    |||||||||||||||||||||| || ||| |||||  |  ||||||||||||| ||||| ||||| ||| |||| |||||||| |||||||||||||||     
T  52009176 tagggtgttccgcctatatacggcgccttatgtttgcatgctcagtttcaccgatctctattcgtcttgggcagggatctggtagtttaataaaatttgc 52009275  T
Q  309 tgtttcaa 316  Q
    ||||||||    
T  52009276 tgtttcaa 52009283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 38636960 - 38636857
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    ||||||||||||| ||||| || || |||||| |||||||| ||||||||||||||||||||  ||| | | || ||||||||||||||||||||| |||    
T  38636960 ggtgttccgccta-atacggcgcctcttgtttgtagtctcattttcaccggtctctgttcgtcctgaacggggacctggttgtttaataaaatttgctgt 38636862  T
Q  312 ttcaa 316  Q
    |||||    
T  38636861 ttcaa 38636857  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 9262807 - 9262898
Alignment:
Q  222 ctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    ||||||||| || ||||||||| || ||||||||||| |||||| ||||||| |||||| | ||| |||||||||||||||||||| |||||    
T  9262807 ctatatacggcgccttttgtttgtattctcagtttcatcggtctttgttcgtcttgagcggggatttggttgtttaataaaatttgctgttt 9262898  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 35393925 - 35393983
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  35393925 cttagaggtccaaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagcc 35393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 312
Target Start/End: Complemental strand, 16832747 - 16832646
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttg-tttaataaaatttgttg 310  Q
    |||||||||||||||| |  || ||||||||| || |||||||||||||| | |||||| || ||||| || | |||||||| |||||||||||||||||    
T  16832747 ggtgttccgcctatatgcagcgccttttgtttgtattctcagtttcaccgatttctgtttgtcttgagaaggggtctggttgttttaataaaatttgttg 16832648  T
Q  311 tt 312  Q
    ||    
T  16832647 tt 16832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 19814946 - 19814849
Alignment:
Q  211 gggtgttccgcctatatacgacgtctttt-gtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    |||||||| || ||||||| ||| ||||| |||| || |||| |||| | |||||||||||||| |||||||| |||||||||||| |||||||||||    
T  19814946 gggtgttctgcttatatacaacgccttttagtttgtactctctgttttatcggtctctgttcgtcttgagcagggatctggttgttaaataaaatttg 19814849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 35383822 - 35383765
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| ||||||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  35383822 ttagggggccaaaatcacaacttcgtgaaagttagggggcgaaaactgctattaagcc 35383765  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 43074668 - 43074616
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  43074668 gggccaaaatcgcaacttcgtgaaagttagggggcgaaaattgctattaagcc 43074616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 14449331 - 14449276
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  14449331 cttagggggccaaaatctcaacttcgtgaaagttagggggcgaaaactgctattaa 14449276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 28967229 - 28967323
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    ||||||||||||||||||  || |||| |||| || | || ||||||||| ||||||||||| ||||||||| |||||||| || |||||||||||    
T  28967229 ggtgttccgcctatatacagcgcctttcgtttgtattatctgtttcaccgatctctgttcgtcttgagcagaaatctggtt-ttaaataaaatttg 28967323  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 48098659 - 48098730
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcag 282  Q
    |||||||||||||||||||  |||||||||||| || | |||||||||||| |||| |||||| ||||||||    
T  48098659 gggtgttccgcctatatactgcgtcttttgtttgtattttcagtttcaccgatctccgttcgtcttgagcag 48098730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 2061557 - 2061460
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    |||||||||||||||| |   || |||||| || ||||||||||| | || ||||||||| ||| |||| ||||||  ||||||||||||||||||||    
T  2061557 tgttccgcctatatacaagacctcttgtttgtattctcagtttcatcagtttctgttcgtcttgggcagggatctgactgtttaataaaatttgttgt 2061460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 312
Target Start/End: Complemental strand, 35948035 - 35947934
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||||| |||||| | |||||||||||| || |||||| |||||  || | ||||||| || ||||  |||||||||||||||||| ||||| ||    
T  35948035 gggtgttccgcttatatatggcgtcttttgtttgtattctcagattcactagtatatgttcgtcttaagcaaggatctggttgtttaataatatttgatg 35947936  T
Q  311 tt 312  Q
    ||    
T  35947935 tt 35947934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 50769618 - 50769675
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| |||||||||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  50769618 ttagggggccaaaatcgcaacttcgtaaaagttagggggcgaaaactgcttttaagcc 50769675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 49747884 - 49747983
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagc-agagatctggttgtttaataaaatttgttgtt 312  Q
    |||||||| ||||||||| ||||||||||| ||  || | ||||||| |||||| ||||| |||||| ||| || |||||||||||||||||||| ||||    
T  49747884 tgttccgcatatatacgatgtcttttgtttgtatgctaaatttcaccagtctctattcgtcttgagcgaga-atatggttgtttaataaaatttgatgtt 49747982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 2654005 - 2653951
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaa 99  Q
    |||||||||| |||||||||| ||||||||| | | |||||||||||||||||||    
T  2654005 gggccaaaatcgcaacttcgtaaaagttaggaggcaaaaactgctattaagccaa 2653951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 6614897 - 6614847
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||| |||||||||||||||||| ||| |||||| ||||||||||||    
T  6614897 gccaaaatcgcaacttcgtgaaagttaagggtcgaaaaatgctattaagcc 6614847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 53312541 - 53312599
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||| |||||| ||||||||||||||||||||||  |||||||| |||||||||    
T  53312541 cttagtgggtcaaaatcgcaacttcgtgaaagttagggggtgaaaactgttattaagcc 53312599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 12296527 - 12296627
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||| |||| ||||||||   ||| |||| || |||| |  ||| |||||||| |||||||||||||||||||||||| || ||||||||||| ||    
T  12296527 gggtgttctgcctgtatacgacacatttagtttgtattctctgaatcatcggtctctattcgttttgagcagagatctggtt-ttaaataaaatttgctg 12296625  T
Q  311 tt 312  Q
    ||    
T  12296626 tt 12296627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 18937293 - 18937248
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctat 91  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||    
T  18937293 ggccaaaattgcaacttcgtgaaagttagaggaagaaacctgctat 18937248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 51371728 - 51371777
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||| ||||||||| |||||||||||| |||||||| ||||||||||    
T  51371728 ccaaaatcgcaacttcgagaaagttagggggcgaaaactactattaagcc 51371777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 54983894 - 54983849
Alignment:
Q  51 aaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||||    
T  54983894 aaatcgcatcttcgtaaaagttaggggacgaaaactgctattaagc 54983849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 23759613 - 23759561
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||||  ||||||||||||| |||||||| ||||||||||    
T  23759613 gggccaaaatcgcaactttatgaaagttagggggcgaaaactactattaagcc 23759561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 27978957 - 27979009
Alignment:
Q  44 agggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    ||||||||||| |||||||||| ||||||||||| |||||| || ||||||||    
T  27978957 agggccaaaatcgcaacttcgttaaagttagggggcgaaaaatgttattaagc 27979009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 2837157 - 2837204
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaact 86  Q
    ||||| ||||||||||||||||||| ||||||||| ||| ||||||||    
T  2837157 cttagggggccaaaattgcaacttcttgaaagttaaggggcgaaaact 2837204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 35615433 - 35615479
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  35615433 ccaaaatcgcaacttcgtgaaagttagggg-tgaaaactgctattaag 35615479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 4796094 - 4796036
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||||||||| |||| || |  ||||||||||||| |||| ||||||||||||    
T  4796094 cttagagggccaaaatcgcaattttgaaaaagttaggggactaaaaatgctattaagcc 4796036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 11824462 - 11824512
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||| |||||||||| ||||||||||| || |||||| |||||||||    
T  11824462 gccaaaatcgcaacttcgtaaaagttagggggcggaaactgttattaagcc 11824512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 21983559 - 21983498
Alignment:
Q  254 tttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttcaa 316  Q
    ||||| |||||||||||||| |||||||| |||||| || |||||||||||||| || |||||    
T  21983559 tttcatcggtctctgttcgtcttgagcagggatctgatt-tttaataaaatttgctgattcaa 21983498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 3658190 - 3658235
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||| |||||||| | |||||||| |||||||||||||||||||    
T  3658190 caaaatcgcaacttcataaaagttagaggacgaaaactgctattaa 3658235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 29697786 - 29697835
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||| |||||||| ||||||||||| |  ||||||||||||||||||    
T  29697786 ccaaaatcgcaacttcatgaaagttaggaggtgaaaactgctattaagcc 29697835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 51362814 - 51362851
Alignment:
Q  57 caacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||| || ||||||||||||||||||||||||||||    
T  51362814 caactttgtaaaagttaggggacgaaaactgctattaa 51362851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 4411493 - 4411537
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| |||||||||||||| ||||||| ||||||||| ||||||    
T  4411493 aaaatcgcaacttcgtgaaaattagggggcgaaaactgttattaa 4411537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 16292534 - 16292578
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| |||||||||||||||||||||| |||||| || ||||||    
T  16292534 aaaatcgcaacttcgtgaaagttagggggcgaaaattgttattaa 16292578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 19909225 - 19909173
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| ||||||| | ||||||||||||   |||||||||||||||||    
T  19909225 gggccaaaatcgcaactttgagaaagttagggggttaaaactgctattaagcc 19909173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 39419342 - 39419298
Alignment:
Q  262 gtctctgttcgttttgagcagagatctggttgtttaataaaattt 306  Q
    ||||||| |||| ||||| |||||| |||||||||||||||||||    
T  39419342 gtctctgatcgtcttgaggagagatatggttgtttaataaaattt 39419298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 49185815 - 49185870
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    ||||| |||||||||| ||||||| ||||||||| ||||  ||||||||||||||||    
T  49185815 cttagggggccaaaatcgcaactttgtgaaagttgggggt-gaaaactgctattaag 49185870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 53924787 - 53924747
Alignment:
Q  57 caacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||||||||||||||||| ||| |||| ||||||||||    
T  53924787 caacttcgtgaaagttagggggcgagaactactattaagcc 53924747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 9313068 - 9312966
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||||||||||||||||| |||||| || || | | |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  9313068 gggtgttccgcctatatacgacgccttttgattgtattataagtttcaccggtctctgttcgtcttgagcagagatctcgttgtttaataaaatttgttg 9312969  T
Q  311 ttt 313  Q
    |||    
T  9312968 ttt 9312966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 11439745 - 11439646
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    ||||||| ||||||| | || ||||||||| || ||||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  11439745 tgttccgtctatatatgtcgccttttgtttgtattctcattttcaccgatctttgttcgtcttgagcagagatctggttgtttaataaaatttgttgttt 11439646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 27102535 - 27102637
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||||| |  ||||||||| || |||||| |||||| |||| ||||||| |||| |||||||||||||||||||||||||||| ||    
T  27102535 gggtgttccgcctatatacggcaccttttgtttgtattctcaggttcaccagtctttgttcgtcttgaacagagatctggttgtttaataaaatttgctg 27102634  T
Q  311 ttt 313  Q
    |||    
T  27102635 ttt 27102637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 4431035 - 4431133
Alignment:
Q  218 ccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttcaa 316  Q
    |||||| |||||| || ||||||||| || ||||| |||||||||||||| ||||| |||||||||||| || ||||||||||||||||| ||||||||    
T  4431035 ccgcctttatacggcgccttttgtttgtattctcaatttcaccggtctctattcgtcttgagcagagatatgtttgtttaataaaatttgctgtttcaa 4431133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 7451962 - 7451887
Alignment:
Q  238 ttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||    
T  7451962 ttgtttgtattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgctgttt 7451887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 312
Target Start/End: Original strand, 27905786 - 27905885
Alignment:
Q  213 gtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    ||||||| ||||||||||||| || | |||| ||||||| | ||||||||||||| ||| | |||||||| ||||||||||||||||||| |||||||||    
T  27905786 gtgttccacctatatacgacgcctctagtttgtagtctctgattcaccggtctctattcttcttgagcagggatctggttgtttaataaattttgttgtt 27905885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 9557272 - 9557362
Alignment:
Q  223 tatatacgacgtcttttgtttctagtctcagtttcaccggtctctgtt-cgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    ||||||||| || |||| ||| || |||||| |||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  9557272 tatatacgatgttttttatttgtattctcagattcaccggtctctgtttcgtcttgagcagagatctggttgtttaacaaaatttgttgtt 9557362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 39642257 - 39642200
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  39642257 ttagagggccaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcc 39642200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 31290722 - 31290644
Alignment:
Q  238 ttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttcaa 316  Q
    |||||| || ||||||| ||||| |||||||||||||||||| | ||||||||||||||||||  ||||| ||||||||    
T  31290722 ttgtttgtattctcagtctcaccagtctctgttcgttttgagtaaagatctggttgtttaatagtatttgatgtttcaa 31290644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 14979063 - 14979115
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    |||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  14979063 ggccaaaattgcaacttcatgaaagttagggggcgaaaacttctattaagcca 14979115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 11050430 - 11050476
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11050430 gccaaaattgcaacttcgtgaaagtta-gggacgaaaactgctattaa 11050476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 37200498 - 37200565
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagca 281  Q
    |||||||||||||||||| |||||| |||| || |||| || |||||||||||||||||| |||||||    
T  37200498 tgttccgcctatatacgatgtctttagtttgtattctcggtatcaccggtctctgttcgtcttgagca 37200565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 10785189 - 10785087
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||| || | |||| ||| ||| |||| || ||||||||| ||| |||||| ||||| |||||||| |||||||||||| ||| ||||||| ||    
T  10785189 gggtgttccgactttgtacggcgtttttagtttgtattctcagttttacccgtctctattcgtcttgagcagggatctggttgttaaatgaaatttgatg 10785090  T
Q  311 ttt 313  Q
    |||    
T  10785089 ttt 10785087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 23891718 - 23891656
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    ||||| ||||||||||  ||||||||||||||||||||  ||||||||||||||||| |||||    
T  23891718 cttagggggccaaaatcacaacttcgtgaaagttagggagcgaaaactgctattaaggcaaaa 23891656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 17033947 - 17034051
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||||| ||||||||||| ||||||||| || | || |  |||||||||| ||||| | ||||||| |||| ||||| |||| ||||||||||||    
T  17033947 gggtgttccgcttatatacgacgccttttgtttgtattatctgaatcaccggtctatgttcatcttgagcatagatttggtt-tttactaaaatttgttg 17034045  T
Q  311 tttcaa 316  Q
     |||||    
T  17034046 attcaa 17034051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 18632602 - 18632651
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    ||||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  18632602 ggccaaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaag 18632651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 17760957 - 17761005
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  17760957 caaaattgcaacttcgtaaaagttaagagacgaaaactgctattaagcc 17761005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 34775225 - 34775328
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||||| || |||| |||| || |||||| || | |||||| ||||||| |||||||| || ||| |  || ||||||||||||||    
T  34775225 gggtgttccgcctatatacggcgcctttagtttgtattctcagctttatcggtctttgttcgtcttgagcag-gacctgatgattaaataaaatttgttg 34775323  T
Q  311 tttca 315  Q
    |||||    
T  34775324 tttca 34775328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 49820509 - 49820605
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    |||||||||||||| ||| ||||||||| |||| || |||| | ||||||| ||||| |  || ||||||||||||| | ||||| |||||||||||    
T  49820509 gggtgttccgcctacatatgacgtctttggtttgtattctctgattcaccgatctctatctgtcttgagcagagatcagattgttaaataaaatttg 49820605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 25486479 - 25486526
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||||||||||||||| | |||||||||||||||||    
T  25486479 aaaatcgcaacttcgtgaaagttagggggcaaaaactgctattaagcc 25486526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 46573083 - 46573141
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| || ||||||| |||||||||| |||||||| |||| |||||||||||||||||    
T  46573083 cttaggggaccaaaatcgcaacttcgtaaaagttagaggacaaaaactgctattaagcc 46573141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 46768529 - 46768626
Alignment:
Q  211 gggtgttccgcctatatacga-cgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    |||||||||||||| |||||  || ||||||||| ||  |||| |||||||  ||||||||||| |||||||   || ||||||||||||||||||||    
T  46768529 gggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccaatctctgttcgtcttgagcaagaatttggttgtttaataaaatttg 46768626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 48319672 - 48319720
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  48319672 caaaatagcaactttgtgaaagttaggg-acgaaaactgctattaagcca 48319720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 10605085 - 10605153
Alignment:
Q  248 tctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttcaa 316  Q
    |||| |||||||| |||||| ||||| |||||||| |||||| ||||| ||||||||||| || |||||    
T  10605085 tctctgtttcaccagtctctattcgtcttgagcagggatctgattgttaaataaaatttgctgattcaa 10605153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 25085447 - 25085399
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||| |||||||  ||||||||||||| |||||||||||||||||||    
T  25085447 caaaatcgcaactttatgaaagttagggggcgaaaactgctattaagcc 25085399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 45739196 - 45739244
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||||||| ||||||||||||||||||  ||||||||||| |||||||    
T  45739196 ggccaaaatcgcaacttcgtgaaagttaaaggacgaaaactactattaa 45739244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 3377559 - 3377501
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| ||||||| |  ||||||||||| | |||||||||||||||||    
T  3377559 cttagggggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcc 3377501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 16874758 - 16874816
Alignment:
Q  39 cttagaggg-ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    ||||||||| ||||||||||||||| | ||||||||||||   ||||||||||||||||    
T  16874758 cttagagggtccaaaattgcaactttgagaaagttagggggttaaaactgctattaagc 16874816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 18216744 - 18216686
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||||| |||||| | |||||||| || ||||||||| |||||||||    
T  18216744 cttagggggccaaaattgtaacttcataaaagttagagggcgaaaactgttattaagcc 18216686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 46912239 - 46912193
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||||| |||||||||||||||||| ||  ||||||||||||||||    
T  46912239 ccaaaatcgcaacttcgtgaaagttaaggagcgaaaactgctattaa 46912193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 376533 - 376433
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    ||||||| ||||||||||| || ||||  ||| || |||| |||||| | |||||||||||| |||||||| ||  ||| || ||||||||||||| |||    
T  376533 ggtgttctgcctatatacggcgcctttactttgtattctctgtttcatccgtctctgttcgtcttgagcagggacgtgg-tggttaataaaatttgctgt 376435  T
Q  312 tt 313  Q
    ||    
T  376434 tt 376433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 3377773 - 3377826
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    ||||||||||  |||||| | |||||||||||| | ||||||||||||||||||    
T  3377773 gggccaaaatcacaactttgggaaagttagggggctaaaactgctattaagcca 3377826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 3612453 - 3612502
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||  ||||||| ||||| ||||||||| |||||||||||||||||    
T  3612453 ccaaaatctcaacttcttgaaacttaggggactaaaactgctattaagcc 3612502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 5287302 - 5287245
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaat 102  Q
    |||||||||| |||||||||||||||||| ||| |||| ||||  |||||||| ||||    
T  5287302 gggccaaaatcgcaacttcgtgaaagttaagggccgaacactgtaattaagcctaaat 5287245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 23220826 - 23220875
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||| | |||||||| ||||||||||| ||||||||||||| |||||    
T  23220826 ccaaaatcgtaacttcgtaaaagttagggggcgaaaactgctatcaagcc 23220875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 26602506 - 26602451
Alignment:
Q  256 tcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    ||||||||||||||| || |||||||| |||| |||| ||||||||||||||||||||    
T  26602506 tcaccggtctctgttggtcttgagcag-gatcgggtt-tttaataaaatttgttgttt 26602451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 27864222 - 27864185
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaact 86  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  27864222 caaaatcgcaacttcgtgaaagttaggagacgaaaact 27864185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 46603714 - 46603810
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgt 308  Q
    ||||||||||||||||||| ||||||||||||| || | || |   ||||||||| | ||||| ||||| || |||||  || |||||||||||||||    
T  46603714 gggtgttccgcctatatacaacgtcttttgtttgtattatctgaaccaccggtctttattcgtcttgagtagggatctcatt-tttaataaaatttgt 46603810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 46895494 - 46895433
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    |||||||  |||||| |||||||| |||||  |||||| | |||||||||||||||||||||    
T  46895494 ttagaggatcaaaatcgcaacttcttgaaatatagggggccaaaactgctattaagccaaaa 46895433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 32863273 - 32863170
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    |||||||||||||||||||||   ||| |||| || ||||| |||||||  |  || ||||| ||||||||  | ||||| | |||||||||||||||||    
T  32863273 ggtgttccgcctatatacgacacatttagtttgtattctcattttcaccaattcctattcgtcttgagcaggaacctggt-gattaataaaatttgttgt 32863175  T
Q  312 ttcaa 316  Q
    |||||    
T  32863174 ttcaa 32863170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 37008274 - 37008218
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    |||| |||||||||| |||||||| |||||  |||||| | ||||||||||||||||    
T  37008274 ttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagc 37008218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 41915788 - 41915836
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||| |||||||| |||||  |||||||| |||||||||||||||||    
T  41915788 caaaatcgcaacttcttgaaatataggggaccaaaactgctattaagcc 41915836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 14893284 - 14893388
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    ||||||||||||||||||| |||||||||||| || |||| |||||||| |||||||||| | ||||||||  |||||||||||||||||||||||||||    
T  14893284 ggtgttccgcctatatacggcgtcttttgtttgtactctcggtttcaccagtctctgttcatcttgagcagttatctggttgtttaataaaatttgttgt 14893383  T
Q  312 ttcaa 316  Q
    |||||    
T  14893384 ttcaa 14893388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 33143680 - 33143576
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||| |||| |||||| || || |||||||||||||| | | ||||||  ||||||||||||||||||||||||||||||||||||    
T  33143680 gggtgttccgcctatatatgacgccttttggttgtattctcagtttcaccgatttatgttcgccttgagcagagatctggttgtttaataaaatttgttg 33143581  T
Q  311 tttca 315  Q
    |||||    
T  33143580 tttca 33143576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 4171098 - 4171196
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| || ||||| ||| | ||||||||||| |||||||||    
T  4171098 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttagttgtttaatagaatttgttg 4171196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 50518817 - 50518712
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||||||||||||||||  ||||||||| || ||||||||||||| |||||||||||| |||||||| ||||   ||||||||||||||||| ||    
T  50518817 gggtgttccgcctatatacgacaccttttgtttgtattctcagtttcaccagtctctgttcgtcttgagcagggatcaaattgtttaataaaatttgatg 50518718  T
Q  311 tttcaa 316  Q
    ||||||    
T  50518717 tttcaa 50518712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 37123723 - 37123824
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||| |||| || |||| ||||||||| || ||||||||||| ||||||| |||||| |||||||||||| |  |||||||||||||||| |||    
T  37123723 gggtgttccgactatgtaggacgccttttgtttgtattctcagtttcatcggtctcagttcgtcttgagcagagatttaattgtttaataaaatttcttg 37123822  T
Q  311 tt 312  Q
    ||    
T  37123823 tt 37123824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 823125 - 823020
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||| | ||||||||||| ||||   || ||||||| |  |||||||||||||||||| |||||||| ||||||||| |||||||||||||| |     
T  823125 gggtgttccccttatatacgacgcctttaacttgtagtctctgaatcaccggtctctgttcgtcttgagcagcgatctggttttttaataaaatttgcta 823026  T
Q  311 tttcaa 316  Q
    ||||||    
T  823025 tttcaa 823020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 19404456 - 19404399
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  19404456 cttagagggctaaaatcgcaacttcgtgaaagttaggggacgaaaactgttattaagc 19404399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 32010145 - 32010245
Alignment:
Q  216 ttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttca 315  Q
    ||||||||||||||||||  ||| | || || |||| |  |||||| ||||||||||| ||||| || |||||||||||| |||||||||||||||||||    
T  32010145 ttccgcctatatacgacgcttttaggttgtattctctgaatcaccgatctctgttcgtcttgagtagggatctggttgttaaataaaatttgttgtttca 32010244  T
Q  316 a 316  Q
    |    
T  32010245 a 32010245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 46358109 - 46358005
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    |||||| |||||||||||  ||||||| |||| || | || |  || | ||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  46358109 ggtgtttcgcctatatacagcgtctttagtttgtattttctgaatctctggtctctgttcgtcttgagcagggatctggttgttaaataaaatttgttgt 46358010  T
Q  312 ttcaa 316  Q
    |||||    
T  46358009 ttcaa 46358005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 86820 - 86878
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||||    
T  86820 cttagggggccaaaatcgcaacttcatgaaagttaggggacgaaaactcctattaagcc 86878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 46226944 - 46226998
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  46226944 ttagggggtcaaaatcgcaacttcgtgaaagttaggggacgaaaactgctattaa 46226998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 14280277 - 14280172
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||||| || ||||  ||| || | ||||||||| || ||| ||||||| ||||||| ||||||| ||||||||||| ||||  ||    
T  14280277 gggtgttccgcctatatacggcgcctttaatttgtattatcagtttcatcgatctttgttcgtcttgagcaaagatctgattgtttaataatatttactg 14280178  T
Q  311 tttcaa 316  Q
    ||||||    
T  14280177 tttcaa 14280172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 25648036 - 25648141
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||| ||||||||  || ||||||||| || ||| |||||||||| ||||||||||| |||| ||| |||  ||||||||||| ||||||| ||    
T  25648036 gggtgttccgtctatatactgcgccttttgtttgtattcttagtttcaccgatctctgttcgtcttgaacagggattaggttgtttaattaaatttgctg 25648135  T
Q  311 tttcaa 316  Q
     |||||    
T  25648136 attcaa 25648141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 48893078 - 48892981
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    |||||| | |||||||| | || ||||||| || ||||||||||| | |||| ||||||| |||||||| ||||| ||||||||||||||||| ||||    
T  48893078 tgttcctcttatatacggcatcgtttgtttgtattctcagtttcatctgtctttgttcgtcttgagcagggatctagttgtttaataaaatttattgt 48892981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 54719042 - 54718994
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  54719042 caaaatcgcaacttcgtgaaagttagtggacgaaaactgctattaagcc 54718994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 14856594 - 14856543
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaa 100  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  14856594 caaaatcgcaacttcgtgaaagttagggtgcgaaaactgctattaagccaaa 14856543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 17773220 - 17773170
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  17773220 gccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcc 17773170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 19074521 - 19074471
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  19074521 gccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcc 19074471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 25594236 - 25594142
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatt 305  Q
    |||||||||||||||||||||||  |||| ||| || |||| |  |||||| |||||||| || |||||||| ||||||||| || |||||||||    
T  25594236 gggtgttccgcctatatacgacgcattttatttttattctctgaatcaccgatctctgtttgtcttgagcagtgatctggtttttaaataaaatt 25594142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 27178186 - 27178141
Alignment:
Q  51 aaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||    
T  27178186 aaatcgcaacttcgtaaaagttaggggacgaaaactgctattaagc 27178141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 28204537 - 28204480
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| ||| |||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  28204537 ttagggggtcaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcc 28204480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 28937419 - 28937351
Alignment:
Q  248 tctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttcaa 316  Q
    ||||| |||||||||||||| ||||| |||| ||||||||||||| |||||||| ||||| || |||||    
T  28937419 tctcaatttcaccggtctctcttcgtcttgaacagagatctggttatttaataatatttgctgattcaa 28937351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 28944228 - 28944284
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaat 102  Q
    ||||||||| ||||||| || ||||||||||||| ||||||||||||||||| ||||    
T  28944228 ggccaaaatcgcaacttagtaaaagttaggggacaaaaactgctattaagcctaaat 28944284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 14349375 - 14349422
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||||    
T  14349375 aaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaagcc 14349422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 43747337 - 43747282
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| |||||||||| |||||||||| |||||||  |||||||||||||||||||    
T  43747337 cttagggggccaaaatcgcaacttcgtaaaagttataggacgaaaactgctattaa 43747282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 48348304 - 48348257
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  48348304 ccaaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaag 48348257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 1814597 - 1814547
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaa 100  Q
    |||||||||||||||| ||||||||||| |||||||| |||| ||||||||    
T  1814597 aaaattgcaacttcgtaaaagttagggggcgaaaactactatgaagccaaa 1814547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 3193037 - 3193095
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||| |||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  3193037 cttagggggtcaaaatcgcaacttcttgaaagttagggggtgaaaactgctattaagcc 3193095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 28712717 - 28712775
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||||||||||  ||||||| | ||||||||||| |||||||||||||||||||    
T  28712717 cttagggggccaaaatcacaacttcataaaagttagggggcgaaaactgctattaagcc 28712775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 33329669 - 33329611
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||| |||||| |||||||||| |||||||| || |||||||||||||||||||    
T  33329669 cttagggggtcaaaatcgcaacttcgtaaaagttagagggcgaaaactgctattaagcc 33329611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 35359246 - 35359304
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaata 103  Q
    ||||||||||| |||||||||||||||||| ||  ||||||| |||||||||| |||||    
T  35359246 gggccaaaattacaacttcgtgaaagttagagggtgaaaactactattaagcctaaata 35359304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 36677574 - 36677524
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||| ||||||||||||||||||| || ||||||||| |||||||||    
T  36677574 gccaaaatcgcaacttcgtgaaagttagcgggcgaaaactgttattaagcc 36677524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 36687656 - 36687606
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||| ||||||||||||||||||| || ||||||||| |||||||||    
T  36687656 gccaaaatcgcaacttcgtgaaagttagcgggcgaaaactgttattaagcc 36687606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 51315740 - 51315798
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| ||||||| | |||||||||||| | |||||||||||||||||    
T  51315740 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcc 51315798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 53184784 - 53184834
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaa 100  Q
    ||||| |||||||||| ||||||||||  ||||||||||||||||||||||    
T  53184784 aaaatcgcaacttcgtaaaagttagggagcgaaaactgctattaagccaaa 53184834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 14340782 - 14340733
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  14340782 ccaaaatcgtaacttcgtgaaagttagggggcgaaaactcctattaagcc 14340733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 52008511 - 52008564
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    ||||||||||||||||||| |||||||| | |||||||| |||| |||||||||    
T  52008511 ccaaaattgcaacttcgtggaagttaggaggcgaaaactactataaagccaaaa 52008564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 38958121 - 38958157
Alignment:
Q  61 ttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||||||||||||| |||||||||||||||||||    
T  38958121 ttcgtgaaagttagggggcgaaaactgctattaagcc 38958157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 44586042 - 44586097
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| |||||||||| ||||||| | |||||||||||| | ||||||||||||||    
T  44586042 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaa 44586097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 53255020 - 53254961
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaa 99  Q
    ||||||||||||||| |||||||| |||||  |||||| | ||||||| |||||||||||    
T  53255020 ttagagggccaaaatcgcaacttcttgaaacatagggggccaaaactgttattaagccaa 53254961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4474324 - 4474378
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||| |||||||||| |||||||||| ||||||||| |  |||||||||||||||    
T  4474324 ttagggggccaaaatcgcaacttcgtaaaagttaggaggagaaaactgctattaa 4474378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 20432248 - 20432190
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| || ||||| | |||||||||| ||||||||||| | |||||||||||||||||    
T  20432248 cttaggggaccaaagtcgcaacttcgtaaaagttagggggcaaaaactgctattaagcc 20432190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 12759555 - 12759503
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||| ||| ||||||||||||| | ||||||| |||||||||    
T  12759555 gggccaaaatcgcaatttcttgaaagttagggggcaaaaactgttattaagcc 12759503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 37063 - 37165
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    ||||||||||||||||  |||||||||||| || | |||||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||    
T  37063 tgttccgcctatatacagcgtcttttgtttgtattatcagtttcaccggtctctgttcgtcttgagcagggatcaggttgtttaataaattttgttgttt 37162  T
Q  314 caa 316  Q
    |||    
T  37163 caa 37165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 50)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 41086532 - 41086427
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||| ||||||||||||| |  |||| ||| ||  ||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  41086532 gggtgtttcgcctatatacgatgctttttctttgtatgctcagtttcactggtctctgttcgtcttgagcagagatctagttgtttaacaaaatttgttg 41086433  T
Q  311 tttcaa 316  Q
    ||||||    
T  41086432 tttcaa 41086427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 33533467 - 33533367
Alignment:
Q  216 ttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttca 315  Q
    ||||||||||||| | || ||||||||| ||  || ||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  33533467 ttccgcctatatatggcgccttttgtttgtatccttagtttcaccagtctctgttcgtcttgagcagagatctggctgttaaataaaatttgttgtttca 33533368  T
Q  316 a 316  Q
    |    
T  33533367 a 33533367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 34230555 - 34230648
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaattt 306  Q
    ||||||||||||||||||| |||||||||||| || || ||||| ||||| ||||||||||| |||||||||||| |||||||||||||| ||||    
T  34230555 ggtgttccgcctatatacggcgtcttttgtttgtattcgcagtt-caccgatctctgttcgtcttgagcagagatatggttgtttaataatattt 34230648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 4975098 - 4975200
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||| |||||||||||||| |||| |||| || ||| ||||||||  |||||||||||| ||||||||||| ||| | ||| ||||||||||||||    
T  4975098 gggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttgttg 4975197  T
Q  311 ttt 313  Q
    |||    
T  4975198 ttt 4975200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 4993006 - 4993108
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||| |||||||||||||| |||| |||| || ||| ||||||||  |||||||||||| ||||||||||| ||| | ||| ||||||||||||||    
T  4993006 gggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttgttg 4993105  T
Q  311 ttt 313  Q
    |||    
T  4993106 ttt 4993108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 18709298 - 18709243
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  18709298 ggccaaaatcgaaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 18709243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 7696314 - 7696416
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||||||||||||||    ||||||||| || ||||| ||||| |||||||||||| | |||||||| ||| |||||||| ||||||||||| ||    
T  7696314 gggtgttccgcctatatacggttccttttgtttgtattctcaatttcatcggtctctgttcatcttgagcagggatttggttgttcaataaaatttgctg 7696413  T
Q  311 ttt 313  Q
    |||    
T  7696414 ttt 7696416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 42802436 - 42802544
Alignment:
Q  211 gggtgttccgcc---tatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    ||||||||||||   ||||||||||  ||||||||| || |||||||||||| | ||||||||||| ||||  || |||  |||||||||||||||||||    
T  42802436 gggtgttccgccgtatatatacgacaccttttgtttgtattctcagtttcactgatctctgttcgtcttgaatagggattaggttgtttaataaaatttg 42802535  T
Q  308 ttgtttcaa 316  Q
    |||||||||    
T  42802536 ttgtttcaa 42802544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 14489472 - 14489524
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  14489472 gggccaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcc 14489524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 13337604 - 13337671
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgag 279  Q
    |||||||| ||||||||||||| ||||||||| || |||| ||||||||||||||||||||| |||||    
T  13337604 ggtgttccacctatatacgacgccttttgtttgtattctctgtttcaccggtctctgttcgtcttgag 13337671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 20572435 - 20572526
Alignment:
Q  221 cctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    ||||||||||||   ||||||||||| |||| |  ||| |||||||||||||||||||| |||||| ||||| || ||||||||||||||||    
T  20572435 cctatatacgacacattttgtttctattctctgaatcatcggtctctgttcgttttgaggagagatgtggtttttaaataaaatttgttgtt 20572526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 16043281 - 16043343
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    ||||| |||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||    
T  16043281 cttagggggccaaaatcgtaacttcgtgaaagttagggggcgaaaactgctgttaagccaaaa 16043343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 312
Target Start/End: Complemental strand, 29139665 - 29139579
Alignment:
Q  224 atatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    |||||||||| ||||| ||| ||  ||||||||||||||||| |||| || |  |||||||||||||||||||||||||| ||||||||    
T  29139665 atatacgacgccttttatttgtatcctcagtttcaccggtctttgtttgtct--agcagagatctggttgtttaataaaaattgttgtt 29139579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 312
Target Start/End: Complemental strand, 33788353 - 33788253
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||||| |||||||| || |||| |||| || |||| || |||||||||||||||||| || ||||||||| ||||| || ||||||||||| ||    
T  33788353 gggtgttccgcatatatacggcgcctttagtttgtattctcggtatcaccggtctctgttcgtctttagcagagatttggtt-ttaaataaaatttgctg 33788255  T
Q  311 tt 312  Q
    ||    
T  33788254 tt 33788253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 34679347 - 34679408
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    |||| ||||||||||  ||||||||||||||||||||| | |||||||||||||||||||||    
T  34679347 ttagggggccaaaatcacaacttcgtgaaagttagggggcaaaaactgctattaagccaaaa 34679408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 10173306 - 10173202
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    |||||||||||||||||| |||  ||| |||| || | |  ||||||||| ||||||||||| ||||||||  ||||||||||| | ||||||||| |||    
T  10173306 ggtgttccgcctatatacaacgcttttagtttgtattatatgtttcaccgatctctgttcgtcttgagcaggaatctggttgttaagtaaaatttgatgt 10173207  T
Q  312 ttcaa 316  Q
    |||||    
T  10173206 ttcaa 10173202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 22884842 - 22884746
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    ||||||||||||||||||||||| |||| |||| || ||||  | ||  |||||| ||||||| |||||||||||| ||||| || |||||||||||    
T  22884842 gggtgttccgcctatatacgacgcctttagtttgtattctctatatcgtcggtctttgttcgtcttgagcagagatttggtttttaaataaaatttg 22884746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 34761127 - 34761171
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  34761127 aaaatcgcaacttcgtgaaagttaggggacgaaaactgctattaa 34761171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 29997301 - 29997400
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    |||||||| ||||||||  | ||||||||| || | ||| ||||| |||||||||||||| || | |||||| | | |||||||||||||||||||||||    
T  29997301 tgttccgcttatatacggtgccttttgtttttattttcaatttcatcggtctctgttcgtctttaccagagaccagattgtttaataaaatttgttgttt 29997400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 19895671 - 19895609
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    ||||| || ||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||    
T  19895671 cttaggggaccaaaatcgcaatttcgtaaaagttaggggacgaaaactgatattaagccaaaa 19895609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 29487498 - 29487554
Alignment:
Q  256 tcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    |||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||    
T  29487498 tcaccggtctctgttcatcttgagcagggatctggtt-tttaataaaatttgttgttt 29487554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 41113465 - 41113372
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    |||||||||||||||| | |||||| |||| || |||||||||||||||||||| ||||| |||| || ||| || || ||| ||| |||||||    
T  41113465 tgttccgcctatatacaatgtctttagtttgtattctcagtttcaccggtctcttttcgtcttgaacatagaactagtagttaaattaaatttg 41113372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 37431800 - 37431848
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||    
T  37431800 ggccaaaatcgcaacttcgtggaagttagggggcgaaaactgctattaa 37431848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 15817101 - 15817011
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaa 303  Q
    |||||||||| ||||||||||||||||  ||| |||||||   || || ||||||||||| | |||||||||||||| ||| ||||||||||    
T  15817101 ggtgttccgcttatatacgacgtctttattttgtagtctctaattgactggtctctgttcatcttgagcagagatctagtt-tttaataaaa 15817011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 1269805 - 1269906
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||| ||||| | ||||||| ||||  ||| || ||||| ||||||||| |||| ||||| |||| ||||||| || ||||| ||||||||||||||    
T  1269805 gggtgtttcgcctttgtacgacgcctttaatttgtattctcaatttcaccggcctct-ttcgtcttgaacagagatttgattgttaaataaaatttgttg 1269903  T
Q  311 ttt 313  Q
    |||    
T  1269904 ttt 1269906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 4925706 - 4925755
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    ||||||||| |||||||||||||||||||||||| |||| | ||||||||    
T  4925706 ggccaaaatcgcaacttcgtgaaagttaggggacaaaaattactattaag 4925755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 15023094 - 15023155
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaa 100  Q
    ||||| ||| ||||||  ||||||| ||||||||||||| | ||||||||||||||||||||    
T  15023094 cttagggggtcaaaatcacaacttcttgaaagttagggggccaaaactgctattaagccaaa 15023155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 15361077 - 15361181
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||| || ||||||||| || |||| |||| || | || |||||||| |||||| ||||| |||||||| ||| || || |||||||||||||||||    
T  15361077 gggtgtttcgtctatatacggcgcctttcgtttgtattatctgtttcaccagtctctattcgtcttgagcagggatttgatt-tttaataaaatttgttg 15361175  T
Q  311 tttcaa 316  Q
     |||||    
T  15361176 attcaa 15361181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 19206199 - 19206142
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| |||||||||| ||||||| |||||| ||||||| |||||| ||||||||||||    
T  19206199 ttagggggccaaaatcgcaactttgtgaaaattagggggcgaaaattgctattaagcc 19206142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 5362227 - 5362175
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| ||||||| |||||||||||||| |||||| | ||||||||||    
T  5362227 gggccaaaatcgcaactttgtgaaagttagggggcgaaaattactattaagcc 5362175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 5470377 - 5470333
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||    
T  5470377 aaaatcgcaacttcgtgaaaataaggggacgaaaactgctattaa 5470333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 8793515 - 8793571
Alignment:
Q  256 tcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    |||||||||| |||||||||| |||||||||||||||  | ||||||||| ||||||    
T  8793515 tcaccggtctttgttcgtttttagcagagatctggtttataaataaaattcgttgtt 8793571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 10772903 - 10772971
Alignment:
Q  236 ttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaat 304  Q
    |||||||| || ||| ||||||| |||||||||||||| |||| ||| |||  ||||||||||||||||    
T  10772903 ttttgtttgtattcttagtttcatcggtctctgttcgtcttgaacagggattaggttgtttaataaaat 10772971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 32969789 - 32969841
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| ||||| | |||| ||||||||||||||| |||||||||||||||||||    
T  32969789 gggctaaaatcgaaactccgtgaaagttagggggcgaaaactgctattaagcc 32969841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 37770378 - 37770279
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||||||||||||||||    |||||| || |||||  ||||||| |||||||| || |||| ||  ||||| | |||| ||||||||||||||    
T  37770378 gggtgttccgcctatatacgacgc---ttgtttgtattctcatattcaccgatctctgtttgtcttgatcatggatctagctgttcaataaaatttgttg 37770282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 6173945 - 6173851
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaattt 306  Q
    ||||||||| ||||||||||| |||||| |||| || | || ||  ||| |||||| |||||| ||| ||||||||||| || |||||||||||||    
T  6173945 gggtgttccacctatatacgatgtctttagtttgtactttccgtaacactggtctcagttcgtcttgtgcagagatctgatt-tttaataaaattt 6173851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 6510263 - 6510310
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||||| |||||||| |||||||||| || ||||||||||||||||    
T  6510263 gccaaaatcgcaacttcatgaaagttagagggcgaaaactgctattaa 6510310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 37803165 - 37803114
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    ||||| ||||||| | |||||||||| ||| |||||||||||||||||||||    
T  37803165 aaaatcgcaactttgagaaagttaggagactaaaactgctattaagccaaaa 37803114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 39918492 - 39918433
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    ||||| |||||||||| ||||||| | |||||||||||| | |||||| |||||||||||    
T  39918492 cttagggggccaaaatcgcaactttgagaaagttagggggctaaaactactattaagcca 39918433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 243
Target Start/End: Complemental strand, 40360686 - 40360655
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgttt 243  Q
    ||||||||||||||||||||||||||||||||    
T  40360686 ggtgttccgcctatatacgacgtcttttgttt 40360655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 4576803 - 4576856
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaa 99  Q
    |||||||||| ||||||| | |||||||||||| | |||||||||||||||||||    
T  4576803 gggccaaaatcgcaactttg-gaaagttaggggtctaaaactgctattaagccaa 4576856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 21358361 - 21358419
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||||||||||  |||||| | |||||||||||| | |||||||||||||||||    
T  21358361 cttagggggccaaaatcacaactttgagaaagttagggggcaaaaactgctattaagcc 21358419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 24472497 - 24472451
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctatt 92  Q
    |||||||||||||| ||||| ||| |||||| |||||||||||||||    
T  24472497 ggccaaaattgcaaattcgtaaaaattagggtacgaaaactgctatt 24472451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 31827804 - 31827846
Alignment:
Q  56 gcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    |||||||||| ||||||||||| |||||| |||||||||||||    
T  31827804 gcaacttcgtaaaagttagggggcgaaaattgctattaagcca 31827846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 36177038 - 36176980
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    |||| |||| ||||| |||||||||||||| |||| || | ||||||||||||||||||    
T  36177038 ttagggggctaaaatcgcaacttcgtgaaacttagagggctaaaactgctattaagcca 36176980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 14816054 - 14816111
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| |||||||||| |||||||| |||||  |||||| | |||||||||||||||||    
T  14816054 ttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcc 14816111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 27740341 - 27740445
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||||| ||||||||||||| |||| |||| || | || |  ||| || ||| ||||||| ||||||||| |||||||| || ||||||||||  ||    
T  27740341 gggtgttccacctatatacgacgcctttagtttgtattatctgaatcatcgatctttgttcgtcttgagcaga-atctggtttttaaataaaattttatg 27740439  T
Q  311 tttcaa 316  Q
    ||||||    
T  27740440 tttcaa 27740445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 6592994 - 6593046
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| ||||| |||||||||||||||||||| | |||||||| || |||||||    
T  6592994 gggctaaaatcgcaacttcgtgaaagttaggtggcgaaaactactgttaagcc 6593046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 16960312 - 16960371
Alignment:
Q  256 tcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtttcaa 316  Q
    |||||||||||| ||||| ||||| ||  |||||||| ||||||||||||||||| |||||    
T  16960312 tcaccggtctctattcgtcttgagaaggaatctggtt-tttaataaaatttgttgattcaa 16960371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 37803398 - 37803446
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||| |||||||||| ||||||||||| |||||| || |||||||||    
T  37803398 caaaatcgcaacttcgtaaaagttagggggcgaaaattgttattaagcc 37803446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 212 - 312
Target Start/End: Complemental strand, 3880339 - 3880239
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    |||||||||| ||||||||    ||||||||| || | |||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||    
T  3880339 ggtgttccgcttatatacggaaccttttgtttgtattttcagtttcaccggtctctgttcgtcttgagcagggatctgattgtttaataaaatttgttgt 3880240  T
Q  312 t 312  Q
    |    
T  3880239 t 3880239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 20701524 - 20701421
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgt 311  Q
    ||||||||||||||||||  || ||||||||| || |||||||||||||| ||||||||||| ||||| || ||| ||||||||||||||||||||| ||    
T  20701524 ggtgttccgcctatatacagcgccttttgtttgtattctcagtttcaccgatctctgttcgtcttgag-agggatttggttgtttaataaaatttgtcgt 20701426  T
Q  312 ttcaa 316  Q
    |||||    
T  20701425 ttcaa 20701421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 3579647 - 3579595
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  3579647 gggccaaaatcgcaacttcgtgaaagttaagggacgaaaactgctattaagcc 3579595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 1377468 - 1377517
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  1377468 gggccaaaatcgcaacttcgtgaaagttaggggacgaaaactgatattaa 1377517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 1385216 - 1385265
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  1385216 gggccaaaatcgcaacttcgtgaaagttaggggacgaaaactgatattaa 1385265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 12766471 - 12766528
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| |||||||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  12766471 ttagggggccaaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagcc 12766528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 6860384 - 6860479
Alignment:
Q  211 gggtgttccgcc--tatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaat 304  Q
    ||||||||||||  |||||||| |||||||||||| || ||| |||||||||| ||| | ||| | |||||||| ||||| |||||||||||||||    
T  6860384 gggtgttccgcccctatatacggcgtcttttgtttgtattcttagtttcaccgatctatattcatcttgagcagggatctagttgtttaataaaat 6860479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 17278190 - 17278094
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    ||||||||||||||||||||||| |||| | || || |||| |  |||||||||||||||| | || ||||| ||||||||| || |||||||||||    
T  17278190 gggtgttccgcctatatacgacgcctttagattgtattctctgaatcaccggtctctgttcatcttaagcagcgatctggtttttaaataaaatttg 17278094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 13423718 - 13423820
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    |||||||||||||||||||| |||| | || || |||||||||||  ||||||||||||| ||||| || || ||  | ||| ||||||||||| |||||    
T  13423718 tgttccgcctatatacgacgcctttagattgtattctcagtttcaaaggtctctgttcgtcttgaggagggacctaatggttaaataaaatttgctgttt 13423817  T
Q  314 caa 316  Q
    |||    
T  13423818 caa 13423820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 238978 - 238930
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  238978 caaaatcgcaacttcgtgaaaattagggggcgaaaactgctattaagcc 238930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 15120327 - 15120235
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaattt 306  Q
    ||||| ||||| ||||| ||||||| |||| || ||||||||| ||||||||||||| |  |||| ||| |||| ||||||| ||||||||||    
T  15120327 tgttctgcctacatacgtcgtctttagtttgtattctcagttttaccggtctctgtttgacttgaccagggatccggttgttaaataaaattt 15120235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 307
Target Start/End: Complemental strand, 16180583 - 16180489
Alignment:
Q  212 ggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    |||||||||| ||||||||  ||||||  ||| || | || ||||||||| ||| ||||||| ||||||||||||||| || ||||||||||||||    
T  16180583 ggtgttccgcttatatacggtgtctttcatttgtattatctgtttcaccgatctttgttcgtcttgagcagagatctgatt-tttaataaaatttg 16180489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 28011385 - 28011436
Alignment:
Q  44 agggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaag 95  Q
    |||| |||||| ||||||||||||||||||||||  ||||||||||||||||    
T  28011385 agggacaaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaag 28011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 30349612 - 30349670
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| ||||||| |  ||||||||||||| |||||||||||||||||    
T  30349612 cttagggggccaaaatcgcaactttgaaaaagttaggggacaaaaactgctattaagcc 30349670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 266174 - 266118
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    |||||||||||||| ||| | ||||||| |||| | |||||||||||||||||||||    
T  266174 gggccaaaattgcagctttgggaaagtttgggggctaaaactgctattaagccaaaa 266118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 18030988 - 18030944
Alignment:
Q  46 ggccaaaattgcaacttcgtgaaagttaggggacgaaaactgcta 90  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||    
T  18030988 ggccaaaatcgcaacttcgtgaaagttagggggagaaaactgcta 18030944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 5003137 - 5003086
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaa 100  Q
    |||||| |||||||| | ||||||||||| ||||||||| ||||||||||||    
T  5003137 caaaatcgcaacttcttaaaagttagggggcgaaaactgttattaagccaaa 5003086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 33401317 - 33401368
Alignment:
Q  47 gccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcca 98  Q
    |||||||| | |||||||| |||||||||||  |||||||||||||||||||    
T  33401317 gccaaaatcgtaacttcgtaaaagttagggggtgaaaactgctattaagcca 33401368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 6036702 - 6036644
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||| |||||| ||||||||||| ||||| | || |||||||||||||||||||    
T  6036702 cttagggggtcaaaatcgcaacttcgtggaagtttgcgggcgaaaactgctattaagcc 6036644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 26601727 - 26601777
Alignment:
Q  51 aaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    |||| |||||||||||||||||||| | | ||||||||||||| |||||||    
T  26601727 aaatcgcaacttcgtgaaagttaggaggcaaaaactgctattatgccaaaa 26601777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 33399843 - 33399786
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||||||||| ||||||| |  ||||||||||| | |||||||||||||||||    
T  33399843 cttagagggccaaaatcgcaactttggaaaagttagggg-ctaaaactgctattaagcc 33399786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 7504884 - 7504933
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||||||||||||||||| |||||  |||||| | ||||||||||||||    
T  7504884 gggccaaaattgcaacttcttgaaatatagggggccaaaactgctattaa 7504933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 2853678 - 2853730
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||||||||||| | |||||||||| |   |||||||||||||||||    
T  2853678 gggccaaaattgcaactttgagaaagttaggaggttaaaactgctattaagcc 2853730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 6807423 - 6807484
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    |||||||| |||||||||||||| | |||||||||||||| |||| ||||||||||||||||    
T  6807423 ttagagggtcaaaattgcaactttgggaaagttaggggactaaaattgctattaagccaaaa 6807484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 12197801 - 12197708
Alignment:
Q  213 gtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaattt 306  Q
    |||||||||||||| |||||| |||| |||| || |||| | ||||||| ||||| ||||| ||||||| |||||| |||||| ||||||||||    
T  12197801 gtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12197708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 12442229 - 12442136
Alignment:
Q  213 gtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaattt 306  Q
    |||||||||||||| |||||| |||| |||| || |||| | ||||||| ||||| ||||| ||||||| |||||| |||||| ||||||||||    
T  12442229 gtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12442136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 17070964 - 17070907
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  17070964 ttagggggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcc 17070907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 17577308 - 17577365
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  17577308 ttagggggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcc 17577365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 17656464 - 17656359
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    |||||||||| |||||||||||| ||||||||| ||   ||| |||||||||||||| ||  |  ||||||| || ||| ||||||||||||||||| ||    
T  17656464 gggtgttccgtctatatacgacgccttttgtttatatgttcaatttcaccggtctctattgctcatgagcagggacctgattgtttaataaaatttgctg 17656365  T
Q  311 tttcaa 316  Q
    ||||||    
T  17656364 tttcaa 17656359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 39889824 - 39889772
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||||||||    
T  39889824 gggccaaaattgcaacttcgtgaaagttaagaggcgaaaactgctattaagcc 39889772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 16982684 - 16982626
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| || ||||||||||||||||||||||||||||||  |||||||||||| |||||    
T  16982684 cttaggggaccaaaattgcaacttcgtgaaagttagggggtgaaaactgctatcaagcc 16982626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 22192360 - 22192307
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctatt 92  Q
    ||||| |||||||||| |||||||||||||||||| ||| ||||||||||||||    
T  22192360 cttagggggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctatt 22192307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 33298589 - 33298646
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    ||||| |||||||||| |||||||||||||||||||| | ||||||||||||| ||||    
T  33298589 cttagggggccaaaatcgcaacttcgtgaaagttaggaggcgaaaactgctatcaagc 33298646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 43312346 - 43312281
Alignment:
Q  248 tctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgttt 313  Q
    ||||||||||| |||||||| ||||| ||||||||||| | ||| ||| |||||||||||||||||    
T  43312346 tctcagtttcatcggtctctattcgtcttgagcagagaccaggtggttaaataaaatttgttgttt 43312281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 14880590 - 14880638
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactg 87  Q
    ||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  14880590 cttagggggccaaaattgcaacttcgtgaaagttagggggcgaacactg 14880638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 20228279 - 20228227
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    |||||| |||||||||| ||||||||| ||||||||||| |||||||||||||    
T  20228279 caaaatcgcaacttcgtaaaagttaggagacgaaaactgttattaagccaaaa 20228227  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 8862346 - 8862251
Alignment:
Q  214 tgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    ||||||| ||||||||| || ||||||||| || |||||  ||||||| ||| ||||||| ||||| || |||||||||| ||| ||||||||||||||    
T  8862346 tgttccgtctatatacggcgccttttgtttgtactctca--ttcaccgatct-tgttcgtcttgagtagggatctggttgcttagtaaaatttgttgtt 8862251  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 10248295 - 10248188
Alignment:
Q  209 tagggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgt 308  Q
    ||||||||||||||||||||||||| |||| | || || |||||||||||  | | || |||||| ||||||   || ||| | ||| ||||||||||||    
T  10248295 tagggtgttccgcctatatacgacgcctttaggttgtattctcagtttcaatgatttcagttcgtcttgagcccggacctgatggttaaataaaatttgt 10248196  T
Q  309 tgtttcaa 316  Q
    ||||||||    
T  10248195 tgtttcaa 10248188  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 26824088 - 26824141
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctatta 93  Q
    ||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||    
T  26824088 cttagagggtcaaaatcgcaacttcgtgaaagttagggg-tgaaaactgctatta 26824141  T

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Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 37813220 - 37813162
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| | || || |||||||||||||| |||||||||||||||||||    
T  37813220 cttagggggccaaaatcgtaaatttgtgaaagttagggggcgaaaactgctattaagcc 37813162  T

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Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 41487258 - 41487200
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||| |||||| |||||||||||||| || |||| |||||||||||||||||||    
T  41487258 cttagggggtcaaaatcgcaacttcgtgaaaattcgggggcgaaaactgctattaagcc 41487200  T

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Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 521581 - 521520
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaa 101  Q
    ||||||||| |||||  |||| |||| ||||| |||||||||||||||||||||||| ||||    
T  521581 ttagagggctaaaatcacaacgtcgtaaaagtgaggggacgaaaactgctattaagctaaaa 521520  T

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Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 9762461 - 9762513
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||||||| ||||||||| | |||||| ||||||||||||    
T  9762461 gggccaaaatcgcaacttcgtaaaagttaggtggcgaaaattgctattaagcc 9762513  T

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Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 25184849 - 25184754
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttg 307  Q
    ||||||||| |||||||||||||| ||| |||| || |||| |  |||||||||||| || || ||||| || ||| ||||| ||||||||||||||    
T  25184849 gggtgttccacctatatacgacgtttttagtttgtactctctgaatcaccggtctctttttgtcttgagtagggatttggtt-tttaataaaatttg 25184754  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 27545611 - 27545671
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaa 99  Q
    ||||| |||||||||| |||||||||||| ||||||||| | ||||| |||||||| ||||    
T  27545611 cttagggggccaaaatcgcaacttcgtgatagttagggggcaaaaaccgctattaaaccaa 27545671  T

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Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 521709 - 521756
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||||||| |||||||  ||||||||||||||||||    
T  521709 aaaatcgcaacttcgtgaaaattagggggtgaaaactgctattaagcc 521756  T

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Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 23702181 - 23702123
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| || ||||||| | ||||| |||||||||| ||| |||||||||||||||||||    
T  23702181 cttaggggaccaaaatcgtaactttgtgaaagttaaggggcgaaaactgctattaagcc 23702123  T

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Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 28349563 - 28349621
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| ||||||| | |||||||||||| | |||||| ||||||||||    
T  28349563 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactactattaagcc 28349621  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 20853435 - 20853378
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||| ||| |||||| ||||||||  |||||||||||| | |||||||||||||||||    
T  20853435 ttagggggtcaaaatcgcaacttcaagaaagttagggggctaaaactgctattaagcc 20853378  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 26889349 - 26889284
Alignment:
Q  41 tagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagccaaaataatt 106  Q
    ||||||| |||||||||||||||  ||||  |||||| | ||||||||||||||||| ||| ||||    
T  26889349 tagagggtcaaaattgcaacttctggaaacatagggggccaaaactgctattaagcctaaaaaatt 26889284  T

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Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 37263406 - 37263361
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||| |||||||||| ||||||| ||| ||||||||||||||||    
T  37263406 caaaatcgcaacttcgtaaaagttaaggggcgaaaactgctattaa 37263361  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 12789157 - 12789125
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgttt 243  Q
    ||||||||||||||||||| |||||||||||||    
T  12789157 gggtgttccgcctatatacaacgtcttttgttt 12789125  T

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Target: scaffold0063 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 58481 - 58560
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctgg 290  Q
    ||||||||  |||||||||| || |||||||||||| | || ||||||||||||||| ||||| |||||||| |||||||    
T  58481 gggtgttctacctatatacggcgccttttgtttctattatctgtttcaccggtctcttttcgtcttgagcagggatctgg 58560  T

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Target: scaffold1384 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 1332 - 1286
Alignment:
Q  266 ctgttcgttttgagcagagatctggttgtttaataaaatttgttgtt 312  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||    
T  1332 ctgttcgttttgagcagggatctggttgcttaataaaatttgttgtt 1286  T

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Target: scaffold0248 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 666 - 723
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagc 96  Q
    ||||| |||||||||| |||||||||| ||||||||| ||||||||||||||| ||||    
T  666 cttagggggccaaaatcgcaacttcgtaaaagttaggagacgaaaactgctatgaagc 723  T

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Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 46123 - 46076
Alignment:
Q  50 aaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  46123 aaaatcgcaacttcgtgaaagttagggggcgaaaactgctataaagcc 46076  T

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Target: scaffold1458 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 1529 - 1471
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| ||||||||||  |||||| |||||||||||||| | |||||||||||||||||    
T  1529 cttagggggccaaaatctcaactttgtgaaagttagggggctaaaactgctattaagcc 1471  T

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Target: scaffold0515 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 3697 - 3639
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| ||||||| | |||||||||||| | |||||||||||||||||    
T  3697 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcc 3639  T

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Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 3697 - 3639
Alignment:
Q  39 cttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||| |||||||||| ||||||| | |||||||||||| | |||||||||||||||||    
T  3697 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcc 3639  T

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Target: scaffold0119 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 41897 - 41796
Alignment:
Q  211 gggtgttccgcctatatacgacgtcttttgtttctagtctcagtttcaccggtctctgttcgttttgagcagagatctggttgtttaataaaatttgttg 310  Q
    ||||||| ||||| | ||||||| ||||  ||| || ||||| ||||||||| |||| ||||| |||| ||||||| || ||||| ||||||||||||||    
T  41897 gggtgtttcgcctttgtacgacgcctttaatttgtattctcaatttcaccggcctct-ttcgtcttgaacagagatttgattgttaaataaaatttgttg 41799  T
Q  311 ttt 313  Q
    |||    
T  41798 ttt 41796  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 21919 - 21971
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    |||||||||| |||||  | | |||||||||||||||||||||||||||||||    
T  21919 gggccaaaatcgcaacagcataaaagttaggggacgaaaactgctattaagcc 21971  T

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Target: scaffold1088 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 2076 - 2022
Alignment:
Q  40 ttagagggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    ||||||||| |||||||||||||| ||| |||||||||   ||||||||||||||    
T  2076 ttagagggctaaaattgcaacttcttgatagttagggggtcaaaactgctattaa 2022  T

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Target: scaffold0194 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 24942 - 24900
Alignment:
Q  48 ccaaaattgcaacttcgtgaaagttaggggacgaaaactgcta 90  Q
    ||||||| | |||||||| ||||||||||||||||||||||||    
T  24942 ccaaaatcgtaacttcgtaaaagttaggggacgaaaactgcta 24900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 9603 - 9648
Alignment:
Q  49 caaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||| |||||||||||||||||||| |  |||||||||||||||    
T  9603 caaaatcgcaacttcgtgaaagttaggaggtgaaaactgctattaa 9648  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 19603 - 19652
Alignment:
Q  45 gggccaaaattgcaacttcgtgaaagttaggggacgaaaactgctattaa 94  Q
    |||||||||| ||||||| |  ||||||||||||| ||||||||||||||    
T  19603 gggccaaaatcgcaactttgaaaaagttaggggactaaaactgctattaa 19652  T

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Target: scaffold0025; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 19080 - 19040
Alignment:
Q  57 caacttcgtgaaagttaggggacgaaaactgctattaagcc 97  Q
    ||||||||||||||||| ||| |||||||| ||||||||||    
T  19080 caacttcgtgaaagttaaggggcgaaaactactattaagcc 19040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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