View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11678_low_10 (Length: 338)
Name: NF11678_low_10
Description: NF11678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11678_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 1197199 - 1197510
Alignment:
| Q |
10 |
tggagtttatttgtatgatttctgcaaaattattcagtgtaaccannnnnnnnnnnnnnnagcgtacaatagtggttaacagttgctataacttccatgt |
109 |
Q |
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| T |
1197199 |
tggagtttatttgtatgatttctgcaaaattattcagtgtaaccaagagagagagagagaagcgtacaatagtggttaacagttggtataacttctatgt |
1197298 |
T |
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| Q |
110 |
tacgctgctttatttgttatggtttggttcaccaaacaatacgttagtataatattttggacctaaatttttatcataaattatggatgaattcacaact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197299 |
tacgctgctttatttgttatggtttggttcaccaaacaatacgttagtataatattttggacctaaatttttatcataaattatggatgaattcacaact |
1197398 |
T |
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| Q |
210 |
aatttctcagctgaatagtgaatattagcttgtgtagcaccgagattgaaaatatgttcaatgtttgataccaacataatactgacacgcataattatat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1197399 |
aatttctcagctgaatagtgaatattagcttgtgtagcaccgagattgaaaacatgttcaatgtttgataccaacataatactgacatgcataattatat |
1197498 |
T |
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| Q |
310 |
taaataacttat |
321 |
Q |
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|||||||||||| |
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| T |
1197499 |
taaataacttat |
1197510 |
T |
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