View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11678_low_13 (Length: 241)
Name: NF11678_low_13
Description: NF11678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11678_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 18611490 - 18611361
Alignment:
| Q |
1 |
catcaatacttttatttgaattttcattcaaattgttattcccaagcgttccaattgcaagtattgcatgatcccaatcactgaattcttgtttataagt |
100 |
Q |
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| T |
18611490 |
catcaatacttttatttgaattttcattcaaattgttattcccaagtgttccaattgcaagtattgcatgatcccaatcactgaattcttgtttataagt |
18611391 |
T |
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| Q |
101 |
ctcattcagcatatgatctgttgaaataat |
130 |
Q |
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| T |
18611390 |
ctcattcagcatatgatctgttgaaataat |
18611361 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 18611332 - 18611269
Alignment:
| Q |
157 |
ttaatcatcatttcacactgatttggcttcaagagggtgcaatattaatatagataagggaaac |
220 |
Q |
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| T |
18611332 |
ttaatcatcatttcacactgatttggcttcaagagggtgcaatattaatatagataagggaaac |
18611269 |
T |
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