View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11678_low_3 (Length: 496)
Name: NF11678_low_3
Description: NF11678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11678_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 47 - 290
Target Start/End: Complemental strand, 32181342 - 32181099
Alignment:
| Q |
47 |
gacctaataggcaaatactacataggaacaagaaatcatgtgtagtagaacagtgttaacatatttattgatctgtaactagcatttattattgtcattt |
146 |
Q |
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| T |
32181342 |
gacctaataggcaaatactacataggaacaagaaatcatgtgtagtagagcagtgttaacatatttattgatctgtaactagcatttattattgtcattt |
32181243 |
T |
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| Q |
147 |
actacttggcattcgtgcaaaaaccaactaacaactgatgtgtatatagattttgtcattgtcaacatcaacaacatcatacatgcccttatttttgcta |
246 |
Q |
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| T |
32181242 |
actacttggcattcatgcaaaaaccaactagcaattgatgagtatatagattttgtcattgtcaacataaacaacatcatacatgtccttatttttgcta |
32181143 |
T |
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| Q |
247 |
ttaaaaatgtcattatttgtaccaaaagaaaaagatgtcattat |
290 |
Q |
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| T |
32181142 |
ttaaaaatgtcattatttgtaccaaaagaaaaagatgtcattat |
32181099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 338 - 480
Target Start/End: Original strand, 40576879 - 40577021
Alignment:
| Q |
338 |
gatttctattattcaaacatcaaatggtcttaaacaacacaactaaaagatggttgaagactcatgcaatttacacaaatgctacaagatttttgaaagt |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40576879 |
gatttctattattcaaacatcaaatggtcttaaacaacacaactaaaagatggttgaagactcatgcaatttacacgaatgctacaagatttttgaaagt |
40576978 |
T |
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| Q |
438 |
gatagaaataccatcttttcaaacatccactcagactggatat |
480 |
Q |
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| T |
40576979 |
gatagaaataccatcttttcaaacatccactcagactggatat |
40577021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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