View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11678_low_4 (Length: 489)
Name: NF11678_low_4
Description: NF11678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11678_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 22831454 - 22831910
Alignment:
| Q |
19 |
gtgaagctttctccaaagcaactacagctggaacagcagcatctaaccatacaaaaacatggaattctgtagcttacaaaatagtaaatgttgagttagt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22831454 |
gtgaagctttctccaaagcaactacagctggaacagcagcatctaaccatacaaaaacatggaattctgtagcatacaaaatagtaaatgttgagttagt |
22831553 |
T |
|
| Q |
119 |
tctaaccctcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtcttgtc |
218 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22831554 |
tctaaccctcaaggaaaaggaaaacaaatagaaaattgtgagaatataaataaaacgatgcaggaaatcacaattgctaccttcagaactttgtcttgtc |
22831653 |
T |
|
| Q |
219 |
tttttacattcattttctatatctaatcttttgttactgcctccattgtacaagaattgtcgttctatctgtcttgtttcttcacgctgccaaacctttg |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22831654 |
tttttacattcattttctatatctaatcttttgttactgcctccattgtacaagaattgtcgttctatctgtcttgtttcttcacgctgccaaacctttg |
22831753 |
T |
|
| Q |
319 |
tctcatttcttgttagtgcactaaatttctctaatatacgataatgaggtgaagtacaatttttctataagattcttttannnnnnnncatcatatcttc |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
22831754 |
tctcatttcttgttagtgcactaaatttctctaatatacgataatgaggtgaagtacactttttctataagattcttttattttttttcatcatatcttc |
22831853 |
T |
|
| Q |
419 |
ctaatagttcttttgcatgcagtgtgtatggatcttatcttccacttccacaggttc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22831854 |
ctaatagttcttttgcatgcagtgtgtatggatcttatcttccacttccacatgttc |
22831910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 22983654 - 22983847
Alignment:
| Q |
23 |
agctttctccaaagcaactacagctggaacagcagcatctaaccatacaaaaacatggaattctgtagcttacaaaatagtaaatgttgagttagttcta |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||| || |
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| T |
22983654 |
agctttctccaaagcaactacagctggaacagctacatctaaccagacaaaaacatggaattctgtagcatgaaaaatggtaaatgttgagttagtttta |
22983753 |
T |
|
| Q |
123 |
accctcaaggaaaaggaaaacaaatcga---aaattgtg-agaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtctt |
215 |
Q |
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||||||||| |||||||||||||| | ||||| || || ||||||||||||| | || |||||||||||||||||||||||||| |||||| |
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| T |
22983754 |
accctcaagcaaaaggaaaacaaaaaaaattaaattctgtagcatataaataaaacaaaac---aaatcacaattgctaccttcagaactgtgtctt |
22983847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 22843847 - 22843950
Alignment:
| Q |
152 |
aattgtgagaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtcttgtctttttacattcattttctatatctaatcttttg |
251 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||| | | ||||||||||||| |||| ||||| |||||| |
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|
| T |
22843847 |
aattgtgaggatataaataaaacgatactggaaatcataattgctacctacagaactttgtctt-tgtctttacattcatttgctatttctaaacttttg |
22843945 |
T |
|
| Q |
252 |
ttact |
256 |
Q |
| |
|
||||| |
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|
| T |
22843946 |
ttact |
22843950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 22983923 - 22984000
Alignment:
| Q |
323 |
atttcttgttagtgcactaaatttctctaatatacgataatgagg--tgaagtacaatttttctataagattctttta |
398 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||| |||||||| |
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|
| T |
22983923 |
atttcgtgttagtgcactaaatttctctaatatacgataacgaggtttgaagtactctttttcttgaaggttctttta |
22984000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 475
Target Start/End: Original strand, 22823063 - 22823104
Alignment:
| Q |
434 |
catgcagtgtgtatggatcttatcttccacttccacaggttc |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
22823063 |
catgcagtgtgtatggatcttatcttccacttccacatgttc |
22823104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 441 - 475
Target Start/End: Complemental strand, 11544290 - 11544256
Alignment:
| Q |
441 |
tgtgtatggatcttatcttccacttccacaggttc |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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| T |
11544290 |
tgtgtatggatcttatcttccacttccacatgttc |
11544256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 441 - 475
Target Start/End: Complemental strand, 11557711 - 11557677
Alignment:
| Q |
441 |
tgtgtatggatcttatcttccacttccacaggttc |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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| T |
11557711 |
tgtgtatggatcttatcttccacttccacatgttc |
11557677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 40945774 - 40945610
Alignment:
| Q |
27 |
ttctccaaagcaactacagctggaacagcagcatctaaccatacaaaa-acatggaattctgtagcttacaaaatagtaaatgttgagttagttctaacc |
125 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||| ||| |||||| || || |||||||||| | ||||| |||| || ||| | || ||||| |
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| T |
40945774 |
ttctccagagctactacagctggaacagcaacatctggccagacaaaagacttgcaattctgtagagtgaaaaatggtaa-tgctgaagtcattataacc |
40945676 |
T |
|
| Q |
126 |
ctcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaaacgatacaggaaatcacaa |
191 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||||||| |||||| | | ||| |||||||||| |
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|
| T |
40945675 |
ctcaaggaaaaggaaaacaaatggaagattatgagaatatgaataaacccacacaagaaatcacaa |
40945610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 40958770 - 40958625
Alignment:
| Q |
21 |
gaagctttctccaaagcaactacagctggaacagcagcatctaaccatacaaaa-acatggaattctgtagcttacaaaatagtaaatgttgagttagtt |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||| ||| |||||| | |||||||||| || | ||||| ||||||| || |
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| T |
40958770 |
gaagctttctccacagcaactacagctggaacagcaacatctggccagacaaaaggcttggaattctgcagagtgaaaaatggtaaatg-------catt |
40958678 |
T |
|
| Q |
120 |
ctaaccctcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaa |
172 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||| ||| |||||||||||||||| |
|
|
| T |
40958677 |
ataacccttaaggaaaaggaaagcaaatagaagattatgagaatataaataaa |
40958625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 22507767 - 22507810
Alignment:
| Q |
19 |
gtgaagctttctccaaagcaactacagctggaacagcagcatct |
62 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||| ||||| |
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|
| T |
22507767 |
gtgaagctttctccagagcaactacagcttgaacagcaacatct |
22507810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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