View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11678_low_5 (Length: 482)
Name: NF11678_low_5
Description: NF11678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11678_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 10210455 - 10210712
Alignment:
| Q |
15 |
cacagagcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
114 |
Q |
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| T |
10210455 |
cacagagcaattttgatacatctagttgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
10210554 |
T |
|
| Q |
115 |
ctgcagcctttcactggaaatatctttaggagacaaagacggcatcggtcggcgatggtggaatcgtgaagaatgggttcaggataagcagataaataac |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210555 |
ctgcagcctttcactggatatatctttaggagacaaagacggcatcggtcggcgatggtggaatcgtgaagaatgggttcaggataagcagataaataac |
10210654 |
T |
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| Q |
215 |
aagcattctgagcacctgattcacaaaagtttaagatgtgtataagcacatatgttta |
272 |
Q |
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| T |
10210655 |
aagcattctgagaacctgattcacaaaagtttaagatgtgtataagcacatatgttta |
10210712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 57 - 272
Target Start/End: Complemental strand, 10108665 - 10108453
Alignment:
| Q |
57 |
acctggtgatgcatattcccttagccaccattccttt-aatatctctctgactcaacatctgcagcctttcactggaaatatctttaggagacaaagacg |
155 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10108665 |
accttgtgatgcatattcccttagccaccattccttttaatatctctctgactcaacatctgcagcctttcactggaaatatctttaggagacaaagacg |
10108566 |
T |
|
| Q |
156 |
gcatcggtcggcgatggtggaatcgtgaagaatgggttcaggataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgt |
255 |
Q |
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| T |
10108565 |
g----tgtcggcgatggtggaatcgtgaagaatgggttcaggaaaagcagataaataacaagcattctgagaacctgattcacaaaagtttaagatgtgt |
10108470 |
T |
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| Q |
256 |
ataagcacatatgttta |
272 |
Q |
| |
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|||||||| |||||||| |
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| T |
10108469 |
ataagcacttatgttta |
10108453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 10216249 - 10216476
Alignment:
| Q |
15 |
cacagagcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
114 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
10216249 |
cacagagcaattt-gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacat |
10216347 |
T |
|
| Q |
115 |
ctgcagcctttcactggaaatatctttaggagacaaagacggcatcggtcggcgatggtggaatcgtgaagaatgggttcaggataagcagataaataac |
214 |
Q |
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|| || | |||||||||||| ||| |||||||||||||| || |||| | |||| |||||| |||||||||||||||||||||||||||| |
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| T |
10216348 |
cttcaacatttcactggaaaaatcattaggagacaaaga----------tggtgatgatagaatggtgaaggatgggttcaggataagcagataaataac |
10216437 |
T |
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| Q |
215 |
aagcattctgagcacctgattcacaaaagtttaagatgt |
253 |
Q |
| |
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| |||||||||| |||| ||||||||||||||||||||| |
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| T |
10216438 |
aggcattctgagaacctaattcacaaaagtttaagatgt |
10216476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 269 - 455
Target Start/End: Original strand, 10212821 - 10213005
Alignment:
| Q |
269 |
tttagacaaagattgtgttgatggtattacaaatgatggatctaggataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttaca |
368 |
Q |
| |
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|||| ||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| | |
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| T |
10212821 |
tttaaacaaagattgtgttgatggaattacaaaggatggatc----ataagctgatctaacacctttacgcaactcagtcacctgcaacattcgtttaaa |
10212916 |
T |
|
| Q |
369 |
tatgaca--gatgaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatattatattagtataaacatatcaaaga |
455 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
10212917 |
aatgacaaagatgaaattgctttgcacttgggggatattcaacctcatctcttctcaaaaatattatattagtataaacatatctaaga |
10213005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 272 - 449
Target Start/End: Complemental strand, 10105454 - 10105276
Alignment:
| Q |
272 |
agacaaagattgtgttgatggtattacaaatgatggatctaggataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttacatat |
371 |
Q |
| |
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||||||||||||||||||||||||||| || || ||||| || ||||||||||||||||||| || |||||||||||||||||||||||| |||| | || |
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| T |
10105454 |
agacaaagattgtgttgatggtattacgaaggaaggatccag-ataagctgatctgacacctgtacacaactcagtcacctgcaacattcatttaaaaat |
10105356 |
T |
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| Q |
372 |
gaca--gatgaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatattatattagtataaacatat |
449 |
Q |
| |
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|||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
10105355 |
gacaaagatgaaattgctttgcacttgcgggatattcaacctcatctcttctcaaaaatattatattagtctaaacatat |
10105276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 272 - 375
Target Start/End: Original strand, 9675292 - 9675395
Alignment:
| Q |
272 |
agacaaagattgtgttgatggtattacaaatgatggatctaggataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttacatat |
371 |
Q |
| |
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||||||| | ||||||||||| |||||||| |||||||| ||||||| ||||||| ||||||| |||| ||||||| | |||| ||||| ||||| | || |
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| T |
9675292 |
agacaaacactgtgttgatggaattacaaaggatggatccaggataaactgatctaacaccttcatacgactcagtgatctgcgacattagtttaaaaat |
9675391 |
T |
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| Q |
372 |
gaca |
375 |
Q |
| |
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|||| |
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| T |
9675392 |
gaca |
9675395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 9683075 - 9683170
Alignment:
| Q |
15 |
cacagagcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
114 |
Q |
| |
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||||||||||||| ||||||||||||| |||| ||||||| | |||||||||||||| |||| |||||||||||||| ||| ||||||||||| |
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| T |
9683075 |
cacagagcaattt-gatacatctggctttatggaactccttg------tgatgcatattcccctagcaaccattcctttaatgtctacatgactcaacat |
9683167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 9683324 - 9683380
Alignment:
| Q |
375 |
agatgaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatatta |
432 |
Q |
| |
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||||||||||||||||||||| |||||| ||||||||| | |||| |||||||||||| |
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| T |
9683324 |
agatgaaattgctttgcactt-ggggatattcaacctcgtctcttatcaaaaatatta |
9683380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 9675430 - 9675486
Alignment:
| Q |
379 |
gaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatattatat |
435 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| | ||||||||||| || ||||| |
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| T |
9675430 |
gaaattgctttgcacttcggggatattcaacctcgtctcttctcaaaattaatatat |
9675486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 9683423 - 9683495
Alignment:
| Q |
198 |
ataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgtataagcacatatgtt |
270 |
Q |
| |
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|||||||| ||||||| |||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||| |
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| T |
9683423 |
ataagcagggaaataaccggcattctgagaacctgatacacgaaagtttaagatgcatataagcatatatgtt |
9683495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 10102629 - 10102593
Alignment:
| Q |
338 |
acaactcagtcacctgcaacattcgtttacatatgac |
374 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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|
| T |
10102629 |
acaactcagtcacctgcaacattcgtttacaaatgac |
10102593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 10105248 - 10105184
Alignment:
| Q |
198 |
ataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgtataagca |
262 |
Q |
| |
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||||||||| |||||||| ||||| | | ||||||||||||||| |||||||||| ||||||| |
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| T |
10105248 |
ataagcagagaaataacaggcatttggcgaacctgattcacaaaattttaagatgtacataagca |
10105184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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