View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11678_low_8 (Length: 357)
Name: NF11678_low_8
Description: NF11678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11678_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 12617770 - 12618101
Alignment:
| Q |
18 |
gaaggcgaatatggtagcgcgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaa |
117 |
Q |
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| T |
12617770 |
gaaggcgaatatggtagcacgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaa |
12617869 |
T |
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| Q |
118 |
agtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaatctgttacatcaaccaatccatcattctttttgtatttgcaaactgttatgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12617870 |
agtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaatctgttacatcaaccaatccatcattctttttgtatttgcaaactgttatgg |
12617969 |
T |
|
| Q |
218 |
acttgatcaaagtttcatctaatccatttgttgaaacatgccatggttcatggatcgaagggttatgatgatgatgatggtcgtcttcaaattcatcgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12617970 |
acttgatcaaagtttcatctaatccatttgttgaaacatgccatggttcatggatcgaagggttatgatgatgatgatggtcgtcttcaaattcatcgtt |
12618069 |
T |
|
| Q |
318 |
tgcttcacgcgattcacttgcctatgcttctc |
349 |
Q |
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| T |
12618070 |
tgcttcacgcgattcactcgccgatgattctc |
12618101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 27268501 - 27268431
Alignment:
| Q |
37 |
cgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctaca |
107 |
Q |
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| T |
27268501 |
cgacatagagggcaattagtatgagatctcaaccaagtatcaatacaagaaatgtgaaaagcatggctaca |
27268431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 27771592 - 27771725
Alignment:
| Q |
37 |
cgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgt |
136 |
Q |
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||||| ||||||||| |||| | |||||| |||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||| | |
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| T |
27771592 |
cgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcat |
27771691 |
T |
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| Q |
137 |
cttgaaactcgtttagacaaacagaacaatctgt |
170 |
Q |
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| T |
27771692 |
cttgaaactcacttagacaaactgaacaatctgt |
27771725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 37504079 - 37504191
Alignment:
| Q |
67 |
agccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaat |
166 |
Q |
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||||| |||||||||||||| | ||||||||| |||||||| ||||| |||| ||| | |||||| || |||||||| || ||||||||||||||| | |
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| T |
37504079 |
agccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaacact |
37504178 |
T |
|
| Q |
167 |
ctgttacatcaac |
179 |
Q |
| |
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|||| ||||||| |
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| T |
37504179 |
ctgtcccatcaac |
37504191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 37227863 - 37227974
Alignment:
| Q |
67 |
agccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaat |
166 |
Q |
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||||| |||||||||||||| | ||||||||||||| |||| || || |||||||||| | ||||||| |||| |||||| | | |||||||||||||| |
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| T |
37227863 |
agccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaacaaacagaacaat |
37227962 |
T |
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| Q |
167 |
ctgttacatcaa |
178 |
Q |
| |
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||| | |||||| |
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| T |
37227963 |
ctgatccatcaa |
37227974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 1867110 - 1867031
Alignment:
| Q |
67 |
agccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactc |
146 |
Q |
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||||| |||||||||||| | | |||||||||||| ||| |||||||||||||||| | ||||||| |||| |||||| |
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| T |
1867110 |
agccaagtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactc |
1867031 |
T |
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