View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11679_high_7 (Length: 250)
Name: NF11679_high_7
Description: NF11679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11679_high_7 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 6904018 - 6903778
Alignment:
| Q |
9 |
gagatgaaaagcattgaaaatattcagctttggattagtctatgtctctatgatatggtttgaagttaattactcgaaactgtgacattggattgttgga |
108 |
Q |
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| T |
6904018 |
gagaagaaaagcattgaaaatattcagctttggattagtctatgtctctgtgatatggtttgaagttaattactcgaaactgtgacattggattgttgga |
6903919 |
T |
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| Q |
109 |
gacgaaaggtccaaatacaacctccaagttagaactgaaactcgactaaaacaattatactcgagagcacttagacgtgtccaaatcaaatttaggtgtc |
208 |
Q |
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| T |
6903918 |
gacgaaaggtccaaatacaacctccaagttagaactgaaactcgactaaaacaattatacttgagagcacttagacgtgtccaaatcaaatttaggtgtc |
6903819 |
T |
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| Q |
209 |
tagaatcatttttatctcttgaaaaactacttcaaaacatca |
250 |
Q |
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| T |
6903818 |
aggaatcatttttgtctcttg-aaaactacttcaaaacatca |
6903778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 204472 - 204715
Alignment:
| Q |
9 |
gagatgaaaagcattgaaaatattcagctttggattagtctatgtctctatgatatggtttgaagttaattactcgaaactgtgacattggattgttgga |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
204472 |
gagaagaaaagcattgaaaatattcagctttggattagtctatgtctctgtgatatggtttgaagttaattactcgaaactgtgacattggattgttgga |
204571 |
T |
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| Q |
109 |
gacgaaaggtccaaatacaacctccaagttagaactgaaactcgactaaaacaattatactcgagagcacttagacgtgtccaaatcaaatttaggtgtc |
208 |
Q |
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| T |
204572 |
gacgaaaggtccaaatacaacctccaagttagaactgaaactcgggtaaaacaattatacttgagagcacttagacgtgtccaaatcaaatttaggtgtc |
204671 |
T |
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| Q |
209 |
tagaatca--tttttatctcttgaaaaactacttcaaaacatca |
250 |
Q |
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| T |
204672 |
tagaatcatttttttttatcttgaaaaactacttcaaaacatca |
204715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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