View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11679_high_8 (Length: 247)
Name: NF11679_high_8
Description: NF11679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11679_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 169203 - 169377
Alignment:
| Q |
66 |
cgatggtcgttttatgtgttagaggtcatttccgaaatgcactaagcaacccttattacattgtctctagacccattttatagaaaaatatggtaattgt |
165 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
169203 |
cgatggtcgttttatgtgttagaggtgatttccgaaatacactaagcaacccttattacattgtctctagacccattttatagaaaaatatggtaattgt |
169302 |
T |
|
| Q |
166 |
ccatgcaaatatagattagttgataatgacaatacattgtaatatgtggagattcgaaccttaaattctctgctt |
240 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
169303 |
ccatgcaaatatagattagttgataataacaatgcattgtaatatgtggagattcaaaccttaaattctctgctt |
169377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University