View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11679_low_1 (Length: 1047)
Name: NF11679_low_1
Description: NF11679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11679_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 18 - 840
Target Start/End: Complemental strand, 10497057 - 10496246
Alignment:
| Q |
18 |
tgaaatatgtcattccatagggaataggctgtgctggaaatgctgaataaaatccacctgtatccgaatttgaatctccaaagttgaatattccttgaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10497057 |
tgaaatatgtcattccatagggaataggttgtgctggaaatgctgaataaaatccacctgtatccgaatttgaatctccaaagttgaatattccttgaaa |
10496958 |
T |
|
| Q |
118 |
atcacattttgagtaacttgatctgatgaatgaagatatcattatgcaattcaacaagagcttaaaaattgcattttccaacatcttaaaggaactcatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10496957 |
atcacattttgagtaacttgatctgatgaatgaagatatcattatgcaatttaacaagagcttaaaaattgcattttccaacatcttaaaggaactcatt |
10496858 |
T |
|
| Q |
218 |
tcttttttaaagatatcttcaccatgcaatttactaccaatggggaatcacattatataaactttgaaggtaaattcaagtattgaattttttaaaaggt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
10496857 |
tcttttttaaagatatcttcaccatgcaatttactaccaatggggaatcacattatataaactttgaagataaattcaagtattgaatttttgaaatggt |
10496758 |
T |
|
| Q |
318 |
cttgaatcaattacgttaatgttgactaattaacaaaccttacagacagatggcagattagccacctacattgcatataaaaggttaaaagattatgagc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10496757 |
attgaatcaattacgttaatgttgactaattaacaaaccttacagacagatggcagattagccacctacattgcatataaaaggttaaaagattataagc |
10496658 |
T |
|
| Q |
418 |
tataaattcatgattcaatgaagaaattgctaaaagaagatcaaagagaatgacatattatttaaagatgtacgtagctagggtcttatatttctatatg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10496657 |
tataaattcatgattcaatgaagaaattgctaaaagaagatcaaagagaatgacatattatttaaagatgtacg----tagggtcttatatttctatatg |
10496562 |
T |
|
| Q |
518 |
ttgagagctaattcgttggattaagacttaagagtatcaatgttgactaattaacaaacacgttacaaatttcttcactagtgagtgagaatcacagtga |
617 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10496561 |
ttgagagctaattcgttggattacgacttaatagtatcaatgttgactaattaacaaacacgttacaaatttcttcactagtgagtgagaatcacagtga |
10496462 |
T |
|
| Q |
618 |
tggttcattggtttgtttaacacttcaacctacttttctttagggaaagtgactggtcaacacaatgaaccaaagattaagaaatgtctaaaataaata- |
716 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10496461 |
--------tggattgtttaacactttaacctacttctctttagggaaagtgactggtcaacacaatgaaccaaagattaagaaatgtctaaaaaaaataa |
10496370 |
T |
|
| Q |
717 |
--aaccgaaatttttcttgaatcacggttgt--catttgtaaataatttattggatattgctagcaagtatacgccttaggacacttgttaatgatttaa |
812 |
Q |
| |
|
||| || ||||||||| |||||| ||||| |||||||||||||||||||||| ||| |||||||| | ||||| |||| ||||||||||| ||| |
|
|
| T |
10496369 |
ttaactgagatttttcttaaatcaccgttgtaaaatttgtaaataatttattggatcttggtagcaagtgt---cctta-gacatttgttaatgatgtaa |
10496274 |
T |
|
| Q |
813 |
aatgaaaacaaatgataatttttatgta |
840 |
Q |
| |
|
||||||||| | || ||||||||||||| |
|
|
| T |
10496273 |
aatgaaaactattgttaatttttatgta |
10496246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 811 - 913
Target Start/End: Original strand, 26738481 - 26738584
Alignment:
| Q |
811 |
aaaatgaaaacaaatg-ataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaatctcatgctaaaaattttactttaa |
909 |
Q |
| |
|
||||||||||||| || |||||||| || ||||| ||| ||||||||||||||||||||| |||||| | ||| || ||| | ||||| || |||||||| |
|
|
| T |
26738481 |
aaaatgaaaacaagtggataattttcatataaaaaaaagttgatttttaatgtttcaatatgttgaatacacatatttcaggataaaatttctactttaa |
26738580 |
T |
|
| Q |
910 |
actt |
913 |
Q |
| |
|
|||| |
|
|
| T |
26738581 |
actt |
26738584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 811 - 913
Target Start/End: Original strand, 41291446 - 41291548
Alignment:
| Q |
811 |
aaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaatctcatgctaaaaattttactttaaa |
910 |
Q |
| |
|
||||| |||| || || ||||||| |||||||| |||||| ||||| ||||||||||| |||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
41291446 |
aaaataaaaataattggtaattttaatgtaaaaaaaaattattttttgatgtttcaatatgttgaatatacaaatctccatataaaatttatactttaaa |
41291545 |
T |
|
| Q |
911 |
ctt |
913 |
Q |
| |
|
||| |
|
|
| T |
41291546 |
ctt |
41291548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 37439329 - 37439282
Alignment:
| Q |
71 |
ccacctgtatccgaatttgaatctccaaagttgaatattccttgaaaa |
118 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||| || ||||| |
|
|
| T |
37439329 |
ccaccagtatcagaatttgaatctccaaagttgaatattgctggaaaa |
37439282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 843
Target Start/End: Complemental strand, 34187067 - 34187014
Alignment:
| Q |
791 |
aggacacttgttaatgattt-aaaatgaaaacaaatgataatttttatgtaaaa |
843 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||| |||||||||| |||||||| |
|
|
| T |
34187067 |
aggacacttgttaaagatttaaaaatggaaacaattgataattttcatgtaaaa |
34187014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 794 - 913
Target Start/End: Complemental strand, 11123581 - 11123463
Alignment:
| Q |
794 |
acacttgttaatgatttaaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaatctcatgct |
893 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| | ||||||| |||||| || || |||||||||| |||||| |||| |||||| | |||||| ||| | |
|
|
| T |
11123581 |
acacttattaaagatttaaaatggaaacaattaataatttctatgtagaa-aagattgatttttgatgttttaatatgttgaatacacaaattctatgat |
11123483 |
T |
|
| Q |
894 |
aaaaattttactttaaactt |
913 |
Q |
| |
|
|||| ||| ||||||||||| |
|
|
| T |
11123482 |
aaaattttcactttaaactt |
11123463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 793 - 867
Target Start/End: Original strand, 2322582 - 2322656
Alignment:
| Q |
793 |
gacacttgttaatgatttaaaa-tgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaa |
867 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||||||| | ||||| || ||||||||||||| ||||||||| |
|
|
| T |
2322582 |
gacacttgttaaagatttaaaaatgaaaacatttgataattatcatgtagaa-aaaattgatttttgatgtttcaa |
2322656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 810 - 864
Target Start/End: Complemental strand, 18915637 - 18915584
Alignment:
| Q |
810 |
taaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgttt |
864 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
18915637 |
taaaatggaaacaattgataatttttatgtaaaa-aaaattgttttttgatgttt |
18915584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 52820598 - 52820671
Alignment:
| Q |
811 |
aaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaat |
885 |
Q |
| |
|
||||||||||||| | |||| ||||||||| || ||||||| ||||| ||| ||||||| |||||||| |||||| |
|
|
| T |
52820598 |
aaaatgaaaacaattaataacttttatgtataa-aaaattgttttttgatgcttcaatatgttgaacacacaaat |
52820671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 811 - 876
Target Start/End: Original strand, 50890705 - 50890770
Alignment:
| Q |
811 |
aaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaa |
876 |
Q |
| |
|
|||||| |||||| || ||| |||||||||||| ||| ||| ||||||| ||||||||||||||| |
|
|
| T |
50890705 |
aaaatggaaacaattgctaaattttatgtaaaaaaaagttgctttttaaaatttcaataggttgaa |
50890770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 795 - 887
Target Start/End: Original strand, 42154890 - 42154983
Alignment:
| Q |
795 |
cacttgttaatgatttaaaa-tgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaatct |
887 |
Q |
| |
|
|||||| ||| ||||||||| || ||| || |||||||||||||| | || ||||||| ||||| ||||||||||| || ||| |||||||||| |
|
|
| T |
42154890 |
cacttgctaaagatttaaaaatgtaaataattgataatttttatgcacaaaaaaattgtttttttatgtttcaatatgtcgaatatacaaatct |
42154983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 48255849 - 48255901
Alignment:
| Q |
53 |
ggaaatgctgaataaaatccacctgtatccgaatttgaatctccaaagttgaa |
105 |
Q |
| |
|
||||| |||| |||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
48255849 |
ggaaaagctgcataaaagccaccagtatctgaatttgaatctccaaagttgaa |
48255901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 798 - 868
Target Start/End: Complemental strand, 12204747 - 12204677
Alignment:
| Q |
798 |
ttgttaatgattta-aaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaat |
868 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||| ||||||| ||| || |||||||||||||||| |
|
|
| T |
12204747 |
ttgttaatgatttagaaatggaaacaattgataatttttctgtaaaa-aaatatgttttttaatgtttcaat |
12204677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University