View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11679_low_2 (Length: 805)
Name: NF11679_low_2
Description: NF11679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11679_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 12 - 573
Target Start/End: Complemental strand, 33791189 - 33790638
Alignment:
| Q |
12 |
agatggacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaactgaatctcttgttgcta |
111 |
Q |
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| T |
33791189 |
agatgtacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaacagaatctcttgttgcta |
33791090 |
T |
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| Q |
112 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
211 |
Q |
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| T |
33791089 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
33790990 |
T |
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| Q |
212 |
tcttgctgctttctctgattcattgcccttctttgagtctattaatatggatgcgtcacacccctgaaattaaatcaaccaaattggtcatgacaaaata |
311 |
Q |
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| T |
33790989 |
tcttgctgctttctctgattcattgcccttctttgagtctattaatatggatgcgtcacacccctgaaattaaatcaaccaaattggtcatgacaaaata |
33790890 |
T |
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| Q |
312 |
ttttatattttggtaagtatatgtgtagagtaagataaatatgcagcttcctaaaaattatgatgaatatgcaattgatgtggtcaccattattcattgt |
411 |
Q |
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| T |
33790889 |
ttgtatattttggtaagtatatgtgtagagtaagataaatatgcagctgcctaaa----------aatatgcaattgatgtggtcaccattattcattgt |
33790800 |
T |
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| Q |
412 |
gaaataaaagaccgaacgagttatacnnnnnnnaaggaatgaagtcattnnnnnnnttatatgacaagaacaattaaaaatggaccaaatatatatttat |
511 |
Q |
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| T |
33790799 |
gaaataaaagaccgaacgagttatactttttttaaggaatgaagtcattaaaaaaattatatgacaagaacaattaaaaatggaccaaatatatatttat |
33790700 |
T |
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| Q |
512 |
ctaagagcaatgttattatttaggaagaatactgtccgcgaaatggaagaatataaatgtga |
573 |
Q |
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| T |
33790699 |
ctaagagcaatgttattatttaggaagaatactgtccgcgaaatggaagaatataaatgtga |
33790638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 621 - 794
Target Start/End: Complemental strand, 33790589 - 33790417
Alignment:
| Q |
621 |
cagttttttatggaaggttctctttaaatgaaactcctttttgtaacaattattaatcaacaattctgttaatcttgtatcatcacaaaactaaagtcaa |
720 |
Q |
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| T |
33790589 |
cagttttttatggaaggttctctttaaatgaaactcctttttgtaacaattattaatcgacaattctgttaatcttgtatcatcacaaaactaaagtcaa |
33790490 |
T |
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| Q |
721 |
taacaattaaaattagaggcannnnnnnatttcttccgtcattaggttattctttaatttgcagtgatgataat |
794 |
Q |
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| T |
33790489 |
taacaatttaaattagaggca-ttttttatttcttccatcattaggttattctttaatttgcagtgatgataat |
33790417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 33764098 - 33764212
Alignment:
| Q |
38 |
taatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaactgaatctcttgttgctaatgatattatgtctgcacatgaaact |
137 |
Q |
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| T |
33764098 |
taatccgtcacgtcttcctgtaggaatattgtattttggtcctccagataaggccacagcatctcttgtagcaagtgctacgatgtctgcacatgaaacc |
33764197 |
T |
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| Q |
138 |
gttgatggacatgca |
152 |
Q |
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| T |
33764198 |
gttgatggacatgca |
33764212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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