View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11679_low_3 (Length: 584)

Name: NF11679_low_3
Description: NF11679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11679_low_3
NF11679_low_3
[»] chr5 (13 HSPs)
chr5 (297-584)||(11860937-11861224)
chr5 (293-584)||(11828805-11829096)
chr5 (2-287)||(11829222-11829525)
chr5 (2-279)||(11861356-11861624)
chr5 (293-486)||(11901284-11901477)
chr5 (293-486)||(12039824-12040017)
chr5 (1-263)||(11900893-11901146)
chr5 (504-584)||(11901516-11901596)
chr5 (504-584)||(12039705-12039785)
chr5 (53-272)||(12040158-12040368)
chr5 (341-489)||(11732725-11732876)
chr5 (1-93)||(11733223-11733315)
chr5 (430-487)||(11973736-11973793)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 297 - 584
Target Start/End: Complemental strand, 11861224 - 11860937
Alignment:
Q  297 tcgactccaccagaacgagctcatcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaa 396  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11861224 tcgactccaccacaacgagctcatcatcaagaccgggatatagtggcatggaagctaactgaggacaatattggatatttagctttgaaatgcaactgaa 11861125  T
Q  397 agatggtctatctttttccgatatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaagaannnnnnn 496  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||           
T  11861124 agatggtctatcattttcccgtatgtctttttcccaccaactttttagattaggacaatctgagattgcaagttccttcaaggatggaaagaattttggt 11861025  T
Q  497 gtattatcttgattgttctttgcaatgaatttcaaagagtccaatctacgaagttggagaaccttgagacgtggaagctgatccattg 584  Q
    ||||||   |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  11861024 gtattagtgtgattgttctctgcaatgaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctgatccattg 11860937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 293 - 584
Target Start/End: Complemental strand, 11829096 - 11828805
Alignment:
Q  293 acgttcgactccaccagaacgagctcatcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaac 392  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  11829096 acgttcgactccaccagaacgagctcatcatcaagaccgggatagagcagcatgcaagctaattgaggacagtattggatatttagctttgaaatgcaac 11828997  T
Q  393 tgaaagatggtctatctttttccgatatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaagaannn 492  Q
    |||||||||||||||| || ||| ||||||| ||||||||||||| |||||| ||| |||||||||||||||| |||||||||||| ||||||||||       
T  11828996 tgaaagatggtctatcattgtcccatatgtcattttcccaccaaccttttagtttaagacaatctgagattgttagttccttcaaggatggaaagaatat 11828897  T
Q  493 nnnngtattatcttgattgttctttgcaatgaatttcaaagagtccaatctacgaagttggagaaccttgagacgtggaagctgatccattg 584  Q
        |||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  11828896 aggtgtatcagcttgattgttctttgcaataaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctcatccattg 11828805  T

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Target: chr5; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 2 - 287
Target Start/End: Complemental strand, 11829525 - 11829222
Alignment:
Q  2 caatcataaatccttaagtcttccaaagttttcacgttttcaggtccccatggaagggtcttcagttttggaatactccttaacgtaagagaacgaagat 101  Q
    |||||||||||||| ||||||| |||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||| ||||||||  |||| |    
T  11829525 caatcataaatcctcaagtctttcaaagttttcacgttttcaactccccatggaagggacttcagttttggaatactccttaatgtaagagattgaaggt 11829426  T
Q  102 ttttcagaccctcccattcagt------------------tccagcgaatttgtcaatgtcaaaaacaagttgttcacatttttcaatagaaagtgatgt 183  Q
    ||||||||||||||||||||||                  ||| ||| ||||||||||||| | |||||||||||||||| ||||||||||||||||| |    
T  11829425 ttttcagaccctcccattcagtcagaccatcccattcagttccggcggatttgtcaatgtccagaacaagttgttcacatctttcaatagaaagtgatat 11829326  T
Q  184 gagtgaactcaaagacttaaaaccttgtggcagagacgttaaattaaaacaatctctaatgtgaagttccttaagtgaaatgaggttttcgagccaactc 283  Q
    |||||| || ||| |||| ||||||||||| ||||||   ||| ||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||    
T  11829325 gagtgagcttaaaaacttgaaaccttgtggtagagactccaaaataaaacaatctctaatgtgaagttcctcaagtgaaatgaagtttttaagccaactc 11829226  T
Q  284 tctg 287  Q
    ||||    
T  11829225 tctg 11829222  T

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Target: chr5; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 2 - 279
Target Start/End: Complemental strand, 11861624 - 11861356
Alignment:
Q  2 caatcataaatccttaagtcttccaaagttttcacgttttcaggtccccatggaagggtcttcagttttggaatactccttaacgtaagagaacgaagat 101  Q
    |||||||||||||||||||||| |||||| ||||| ||||||  |||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |    
T  11861624 caatcataaatccttaagtctttcaaagtgttcacattttcaactccccatggaagggacttaagttttggaatactccttaatgtaagagaacgaaggt 11861525  T
Q  102 ttttcagaccctcccattcagttccagcgaatttgtcaatgtcaaaaacaagttgttcacatttttcaatagaaagtgatgtgagtgaactcaaagactt 201  Q
    |||||||||||||||| ||| ||     | || |     |||||| | |||||| || |||| |||||||||  |||| |  ||||||||||||||||||    
T  11861524 ttttcagaccctcccactcattt-----ggatgt----ttgtcaagatcaagttcttgacatctttcaatagtgagtgtttggagtgaactcaaagactt 11861434  T
Q  202 aaaaccttgtggcagagacgttaaattaaaacaatctctaatgtgaagttccttaagtgaaatgaggttttcgagcca 279  Q
     ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  11861433 gaaaccttgtggtagagacgctaaattaaaacaatctctaatgtgaagttcctcaagtgaaatgaagtttttgagcca 11861356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 293 - 486
Target Start/End: Original strand, 11901284 - 11901477
Alignment:
Q  293 acgttcgactccaccagaacgagctcatcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaac 392  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| | ||||||| ||||||| ||||| |||||||||||||    
T  11901284 acgttcgactccacaagaacaagctcatcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaac 11901383  T
Q  393 tgaaagatggtctatctttttccgatatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaa 486  Q
    ||||| |||||||||| ||  || | || || ||||||||||||||||| |||||||||||||| || |||||||||||||||||| |||||||    
T  11901384 tgaaatatggtctatcattaccccaaatctcattttcccaccaacttttcagattaggacaatccgaaattgtaagttccttcaaggatggaaa 11901477  T

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Target: chr5; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 293 - 486
Target Start/End: Complemental strand, 12040017 - 12039824
Alignment:
Q  293 acgttcgactccaccagaacgagctcatcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaac 392  Q
    ||||| ||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||  || |||||||||| |||||| || ||||||||||    
T  12040017 acgtttgactccaccagaacgagctcatcatcaagattaggatatagtggcatgcaagctaacttggggcaatattggacatttagtttggaaatgcaac 12039918  T
Q  393 tgaaagatggtctatctttttccgatatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaa 486  Q
    |||||||||||||||| || ||| |||| ||  ||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||    
T  12039917 tgaaagatggtctatcattatcccatatctcagtttcccaccaactgtttagatttggacaatccgagattgtaagttccttcaaggatggaaa 12039824  T

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Target: chr5; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 11900893 - 11901146
Alignment:
Q  1 gcaatcataaatccttaagtcttccaaagttttcacgttttcaggtccccatggaagggtcttcagttttggaatactccttaacgtaagagaacgaaga 100  Q
    ||||||||||| |||||| || | |||||  |||| |||||||  | ||| |||||||| ||| ||||| |||||||||||||| ||||||||||||||     
T  11900893 gcaatcataaagccttaaatcatgcaaagagttcaagttttcaatttcccttggaagggacttgagtttgggaatactccttaatgtaagagaacgaagc 11900992  T
Q  101 tttttcagaccctcccattcagttccagcgaatttgtcaatgtcaaaaacaagttgttcacatttttcaatagaaagtgatgtgagtgaactcaaagact 200  Q
    ||| ||||||||| |||||||||||| | ||         |||| | | |||||| ||||||| | |||||||  |||||| ||||||||||||||||||    
T  11900993 tttctcagacccttccattcagttccggaga---------tgtcgagatcaagttcttcacatctctcaatagtgagtgatatgagtgaactcaaagact 11901083  T
Q  201 taaaaccttgtggcagagacgttaaattaaaacaatctctaatgtgaagttccttaagtgaaa 263  Q
    | ||||||||||| | |||| ||||| ||| ||||||||||||||||||||||| ||| ||||    
T  11901084 tgaaaccttgtggtaaagactttaaaataacacaatctctaatgtgaagttcctcaagcgaaa 11901146  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 504 - 584
Target Start/End: Original strand, 11901516 - 11901596
Alignment:
Q  504 cttgattgttctttgcaatgaatttcaaagagtccaatctacgaagttggagaaccttgagacgtggaagctgatccattg 584  Q
    |||||||||| | |||||||||||||| |||||||| ||| |||| |||||||||||||||| ||||||||||||||||||    
T  11901516 cttgattgttttctgcaatgaatttcagagagtccagtctccgaatttggagaaccttgagatgtggaagctgatccattg 11901596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 504 - 584
Target Start/End: Complemental strand, 12039785 - 12039705
Alignment:
Q  504 cttgattgttctttgcaatgaatttcaaagagtccaatctacgaagttggagaaccttgagacgtggaagctgatccattg 584  Q
    |||||||||| ||||||||||||||||  |||||||| || ||||||||||||||||||||| ||||||||| ||||||||    
T  12039785 cttgattgttttttgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattg 12039705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 272
Target Start/End: Complemental strand, 12040368 - 12040158
Alignment:
Q  53 ggaagggtcttcagttttggaatactccttaacgtaagagaacgaagatttttcagaccctcccattcagttccagcgaatttgtcaatgtcaaaaacaa 152  Q
    ||||||| ||| || ||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||| ||   | | | |         ||| | |||    
T  12040368 ggaagggacttgagatttggaatactccttaatgtaagagaacgaaggtttatcagaccctcccactcatttggggaggact---------caagatcaa 12040278  T
Q  153 gttgttcacatttttcaatagaaagtgatgtgagtgaactcaaagacttaaaaccttgtggcagagacgttaaattaaaacaatctctaatgtgaagttc 252  Q
    |||||| |||| |||||||||  |||| |  ||||||||||||||||   |||||||  || |||||| | ||||  |||||||||| ||||||||||||    
T  12040277 gttgttgacatctttcaatagtgagtgtttcgagtgaactcaaagaccggaaaccttcaggtagagacttcaaatggaaacaatctcgaatgtgaagttc 12040178  T
Q  253 cttaagtgaaatgaggtttt 272  Q
    |||||||||||||| |||||    
T  12040177 cttaagtgaaatgaagtttt 12040158  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 489
Target Start/End: Complemental strand, 11732876 - 11732725
Alignment:
Q  341 ggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccgatatgt---ctttttcccaccaac 437  Q
    |||| ||| ||||| | ||||||| || |||||||||| ||||||||||||  |||||||||||| | ||||| | || | |   | |||||||||||||    
T  11732876 ggcacgcatgctaatttaggacaacatcggatatttagttttgaaatgcaagggaaagatggtctgttttttttcaatgtcttatcattttcccaccaac 11732777  T
Q  438 tttttagattaggacaatctgagattgtaagttccttcaagcatggaaagaa 489  Q
    |||  || ||||||||||| || |||||||| |||||||||  |||||||||    
T  11732776 tttcgagtttaggacaatccgaaattgtaagctccttcaaggctggaaagaa 11732725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 11733315 - 11733223
Alignment:
Q  1 gcaatcataaatccttaagtcttccaaagttttcacgttttcaggtccccatggaagggtcttcagttttggaatactccttaacgtaagaga 93  Q
    |||||||||||||||||| |||| ||| | ||||| |||| ||  ||| | || |||||||   |||||||||||||||||||| ||||||||    
T  11733315 gcaatcataaatccttaaatctttcaatgatttcaagtttccaaatccgcgtgtaagggtcactagttttggaatactccttaaagtaagaga 11733223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 487
Target Start/End: Original strand, 11973736 - 11973793
Alignment:
Q  430 ccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaag 487  Q
    |||||| || || ||||||||||||||||||||||| ||||||| |||  ||||||||    
T  11973736 ccaccacctcttgagattaggacaatctgagattgtgagttcctccaaagatggaaag 11973793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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