View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11679_low_6 (Length: 254)
Name: NF11679_low_6
Description: NF11679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11679_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 11860959 - 11860751
Alignment:
| Q |
19 |
gagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaagtgagccaattagac |
118 |
Q |
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| T |
11860959 |
gagatgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaatttaccaaggaattgaagtgaagcgagccaattagac |
11860860 |
T |
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| Q |
119 |
aacatgtggccatggtacccgacgactaatagcactttcagattctgatgtggctcgagaaaatccataaatttattatcgatgacgacatcgctttctt |
218 |
Q |
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| T |
11860859 |
aacatgtggccatggtacccgacaactaatagctctttcagattctgatgtggctcgagacaatcgataaatttattatcaatgtcgacattgctttctt |
11860760 |
T |
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| Q |
219 |
cctcctcgt |
227 |
Q |
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||||||||| |
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| T |
11860759 |
cctcctcgt |
11860751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 11828827 - 11828663
Alignment:
| Q |
19 |
gagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaagtgagccaattagac |
118 |
Q |
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|||| ||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||||| |||||| |
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| T |
11828827 |
gagatgtggaagctcatccattggtgggagaaattcgcatttgggacagtcattcaaggtaaacttaacaaggcattgaagtgaagcgagccagttagac |
11828728 |
T |
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| Q |
119 |
aacatgtggccatggtacccgacgactaatagcactttcagattctgatgtggctcgagaaaatc |
183 |
Q |
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| T |
11828727 |
aatgtgtgaccgttgtacccgacaactaatagcacttgcagatttggatgtggctggagacaatc |
11828663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 11901574 - 11901645
Alignment:
| Q |
19 |
gagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaag |
90 |
Q |
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| T |
11901574 |
gagatgtggaagctgatccattggggggagaaactcgcatttgggacagtcgttcaaggtaaacttaacaag |
11901645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 11732625 - 11732512
Alignment:
| Q |
25 |
tggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaagtgagccaattagacaacatg |
124 |
Q |
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| T |
11732625 |
tggaaggtgatcgattggcggtagaaatttgcatttaggacagtcactcaaggtaaacttaacaaggcattgaagcgaatcgagccatttagataaggtg |
11732526 |
T |
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| Q |
125 |
tggccatggtaccc |
138 |
Q |
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| T |
11732525 |
cggccattgtaccc |
11732512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 12039727 - 12039643
Alignment:
| Q |
19 |
gagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaa |
103 |
Q |
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|||| ||||||||| ||||||||| |||||||||| ||| || || ||||| |||||||||||||||||||| | ||||||||| |
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| T |
12039727 |
gagatgtggaagctcatccattggcgggagaaattcgcattttgggcagtcattcaaggtaaacttaacaagacaatgaagtgaa |
12039643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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