View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_high_10 (Length: 286)

Name: NF1167_high_10
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_high_10
NF1167_high_10
[»] chr5 (14 HSPs)
chr5 (37-245)||(40751228-40751436)
chr5 (37-189)||(40763233-40763385)
chr5 (50-160)||(5058311-5058423)
chr5 (64-160)||(40147516-40147610)
chr5 (87-160)||(38747281-38747353)
chr5 (38-102)||(213721-213788)
chr5 (54-147)||(28278560-28278652)
chr5 (104-160)||(13488514-13488569)
chr5 (50-160)||(27015787-27015896)
chr5 (107-160)||(3075549-3075601)
chr5 (37-112)||(27637454-27637529)
chr5 (104-158)||(32637137-32637190)
chr5 (107-160)||(534075-534127)
chr5 (107-148)||(30682733-30682774)
[»] chr3 (20 HSPs)
chr3 (37-160)||(6095390-6095516)
chr3 (39-160)||(43403530-43403654)
chr3 (39-160)||(43401587-43401711)
chr3 (37-160)||(54593958-54594086)
chr3 (39-160)||(55301758-55301885)
chr3 (39-161)||(49199253-49199379)
chr3 (37-134)||(31340042-31340138)
chr3 (37-161)||(47304509-47304630)
chr3 (37-117)||(46860726-46860809)
chr3 (44-117)||(41819358-41819431)
chr3 (65-160)||(40913553-40913646)
chr3 (107-160)||(29196189-29196241)
chr3 (54-157)||(34491456-34491557)
chr3 (50-113)||(46173625-46173687)
chr3 (104-161)||(7764779-7764835)
chr3 (107-160)||(29813378-29813430)
chr3 (115-165)||(4160054-4160103)
chr3 (107-160)||(9635923-9635975)
chr3 (115-160)||(19683687-19683731)
chr3 (107-160)||(29811185-29811237)
[»] chr7 (23 HSPs)
chr7 (37-160)||(4510339-4510465)
chr7 (37-160)||(4512181-4512307)
chr7 (39-136)||(2360795-2360891)
chr7 (37-158)||(4508499-4508623)
chr7 (37-136)||(6359768-6359866)
chr7 (44-160)||(32357848-32357964)
chr7 (37-120)||(34310544-34310631)
chr7 (54-162)||(22270217-22270323)
chr7 (54-160)||(30814666-30814770)
chr7 (94-160)||(6430431-6430496)
chr7 (104-161)||(26417630-26417686)
chr7 (39-102)||(3259248-3259314)
chr7 (104-160)||(18126960-18127015)
chr7 (39-117)||(2390539-2390620)
chr7 (39-117)||(8359152-8359230)
chr7 (107-160)||(14069633-14069685)
chr7 (107-160)||(14379661-14379713)
chr7 (107-160)||(23555358-23555410)
chr7 (104-148)||(43864558-43864602)
chr7 (107-162)||(47675934-47675988)
chr7 (107-160)||(4586478-4586530)
chr7 (107-160)||(31732768-31732820)
chr7 (115-160)||(41317238-41317282)
[»] chr6 (15 HSPs)
chr6 (39-160)||(17758278-17758402)
chr6 (37-160)||(21589182-21589308)
chr6 (39-137)||(3808517-3808618)
chr6 (73-160)||(5043919-5044006)
chr6 (37-160)||(26829909-26830037)
chr6 (39-160)||(17763245-17763369)
chr6 (54-160)||(602903-603007)
chr6 (73-148)||(22424626-22424701)
chr6 (39-117)||(26800841-26800922)
chr6 (104-160)||(5406002-5406057)
chr6 (104-160)||(5410327-5410382)
chr6 (37-102)||(2972784-2972852)
chr6 (107-161)||(22963507-22963560)
chr6 (107-161)||(23824833-23824886)
chr6 (107-160)||(33160150-33160202)
[»] chr4 (20 HSPs)
chr4 (39-160)||(2209972-2210096)
chr4 (37-160)||(40632696-40632825)
chr4 (63-160)||(41639705-41639801)
chr4 (37-160)||(50673638-50673764)
chr4 (37-160)||(21688497-21688620)
chr4 (87-160)||(50262487-50262559)
chr4 (79-160)||(6656222-6656305)
chr4 (104-160)||(12739353-12739408)
chr4 (44-112)||(54881562-54881629)
chr4 (39-117)||(41964667-41964748)
chr4 (37-117)||(379632-379715)
chr4 (107-160)||(26175436-26175488)
chr4 (107-160)||(48143365-48143417)
chr4 (104-160)||(5369881-5369936)
chr4 (37-117)||(35662692-35662771)
chr4 (107-160)||(12743728-12743780)
chr4 (107-160)||(29999628-29999680)
chr4 (107-148)||(37740942-37740983)
chr4 (73-117)||(46703840-46703884)
chr4 (110-158)||(52467159-52467206)
[»] scaffold0176 (1 HSPs)
scaffold0176 (39-160)||(17793-17917)
[»] scaffold0466 (1 HSPs)
scaffold0466 (50-160)||(7593-7703)
[»] chr1 (20 HSPs)
chr1 (37-160)||(13548792-13548916)
chr1 (37-143)||(37876571-37876683)
chr1 (37-160)||(11348952-11349080)
chr1 (39-141)||(37032876-37032983)
chr1 (37-141)||(47255150-47255253)
chr1 (37-131)||(29136499-29136596)
chr1 (44-160)||(13546886-13547002)
chr1 (37-136)||(42297791-42297888)
chr1 (37-102)||(194773-194837)
chr1 (79-160)||(19752952-19753032)
chr1 (108-160)||(28220026-28220077)
chr1 (37-102)||(31925560-31925623)
chr1 (107-160)||(20762985-20763037)
chr1 (107-160)||(28223221-28223273)
chr1 (104-136)||(1833822-1833854)
chr1 (89-141)||(19754772-19754824)
chr1 (73-117)||(28242596-28242640)
chr1 (104-136)||(28265381-28265413)
chr1 (73-117)||(34603854-34603898)
chr1 (104-136)||(37503384-37503416)
[»] chr2 (7 HSPs)
chr2 (37-159)||(45727178-45727305)
chr2 (50-160)||(1631521-1631637)
chr2 (39-102)||(42287959-42288025)
chr2 (39-102)||(17450830-17450893)
chr2 (107-160)||(11690804-11690856)
chr2 (104-161)||(4502932-4502987)
chr2 (107-160)||(29868185-29868237)
[»] chr8 (8 HSPs)
chr8 (39-160)||(11384238-11384366)
chr8 (37-160)||(42434779-42434908)
chr8 (37-118)||(18655654-18655738)
chr8 (107-161)||(15213103-15213156)
chr8 (107-148)||(3303481-3303522)
chr8 (107-160)||(4743027-4743079)
chr8 (37-75)||(4283775-4283813)
chr8 (39-102)||(40329029-40329095)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 40751228 - 40751436
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtga 136  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  40751228 tatagattaggtctatattgttgttattgcttgtggtttacatttggttattggttgtcattgatacttactccacaaatcatagtttgtattggtgtga 40751327  T
Q  137 gatttaagtccggaattcacaacattttgcatagctatatctggtattataaattctaatttaggttaccttaaagtatttcacatttcattttgtttac 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  40751328 gatttaagtccggaattcacaacattttgcatagctatatctggtattataaattctaattcaagttaccttaaagtatttcacatttcattttgtttac 40751427  T
Q  237 gatagttat 245  Q
    |||||||||    
T  40751428 gatagttat 40751436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 40763233 - 40763385
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtga 136  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||||||| || ||||||| |||||||||| |||||||||||    
T  40763233 tatagattaggtctatattgttgttattgcttatggtttacatttgattattggttgtcattgatacttgctccacagatcatagtttatattggtgtga 40763332  T
Q  137 gatttaagtccggaattcacaacattttgcatagctatatctggtattataaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40763333 gatttaagtccggaattcacaacattttgcatagctatatctggtattataaa 40763385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 5058311 - 5058423
Alignment:
Q  50 tatattgttgctattgcttgtggtttacattt--ggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtcc 147  Q
    |||||||||| | |||||||||||| ||||||  |||| |||||||||||||||| ||  |||||| |||||| ||| ||||||||||| |||| ||| |    
T  5058311 tatattgttgttgttgcttgtggttaacatttttggttgttggttgccattgatacttgttccacacatcataatttatattggtgtgaaatttgagttc 5058410  T
Q  148 ggaattcacaaca 160  Q
    | |||||||||||    
T  5058411 gaaattcacaaca 5058423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 40147516 - 40147610
Alignment:
Q  64 tgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||||||||| | |||||| |||||| ||||| ||| || ||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  40147516 tgcttgtggttta-acttggttgttggtttccattaatacttgctccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 40147610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 38747281 - 38747353
Alignment:
Q  87 ttggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||| |||| |||||  |||||||||||    
T  38747281 ttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtcc-aaattcacaaca 38747353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 213721 - 213788
Alignment:
Q  38 atagattaggtctatattgttgctattgcttgtgg---tttacatttggttattggttgccattgata 102  Q
    ||||| |||||||||||||||| ||||||||||||   ||||||||||||||||| |||| |||||||    
T  213721 atagactaggtctatattgttgttattgcttgtggttttttacatttggttattgattgctattgata 213788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 28278560 - 28278652
Alignment:
Q  54 ttgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtcc 147  Q
    |||||| | |||||||||||| |  |||| || |||||||||||||||| || ||||||| |||||| ||||||||||||||| |||| |||||    
T  28278560 ttgttgttgttgcttgtggttaat-tttgtttgttggttgccattgatacttgctccacacatcatattttgtattggtgtgaaatttgagtcc 28278652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 13488514 - 13488569
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  13488514 ttactccacacatcatattttgtattggtgtgagatttgagtcc-gaattcacaaca 13488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 27015787 - 27015896
Alignment:
Q  50 tatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccgg 149  Q
    |||||||||| | ||||||||| ||||| ||||||| ||| |||||||| ||| || ||||||  |||||||||||| ||| ||||| ||||  ||||      
T  27015787 tatattgttgttgttgcttgtgatttac-tttggttgttgattgccattaatacttgctccacccatcatagtttgttttgctgtgaaatttgggtccca 27015885  T
Q  150 aattcacaaca 160  Q
    |||||||||||    
T  27015886 aattcacaaca 27015896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 3075601 - 3075549
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  3075601 ctccacacatcatagtttgtattggtgtgagtttttagtcc-gaattcacaaca 3075549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 27637529 - 27637454
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccac 112  Q
    |||||| |||||||||||||||| | ||||||||| ||||| ||||||| ||| || ||||| ||| || ||||||    
T  27637529 tatagactaggtctatattgttgttgttgcttgtgatttacttttggttgttgattaccattaatacttgctccac 27637454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 32637137 - 32637190
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaa 158  Q
    |||||||||| ||||||||||||||||||||||| ||| | ||| ||||||||||    
T  32637137 ttactccacacatcatagtttgtattggtgtgagttttgaatcc-gaattcacaa 32637190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 534075 - 534127
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| |||||||||| |||||||||||| ||| ||||| ||||||||||||    
T  534075 ctccacacatcatagtttctattggtgtgagttttgagtcc-gaattcacaaca 534127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 30682774 - 30682733
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccg 148  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||    
T  30682774 ctccacacatcatagtttgtattggtgtgagttttgagtccg 30682733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 6095516 - 6095390
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtg 133  Q
    |||||| |||||||||||||||| ||||||||||||||   |||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||    
T  6095516 tatagactaggtctatattgttgttattgcttgtggttatttacatttgattattggttgccattgatacttgctccacacatcatagtttgtattggtg 6095417  T
Q  134 tgagatttaagtccggaattcacaaca 160  Q
    ||| |||| ||||| ||||||||||||    
T  6095416 tgaaatttgagtcccgaattcacaaca 6095390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 43403654 - 43403530
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtg 135  Q
    |||||||| |||| ||||||  ||||||||||||||   |||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  43403654 tagattagatctagattgttattattgcttgtggttatttacatttggttattggttgccattgatacttgctccacacatcatagtttgtattggtgtg 43403555  T
Q  136 agatttaagtccggaattcacaaca 160  Q
    | |||| ||||||||||||||||||    
T  43403554 aaattttagtccggaattcacaaca 43403530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 43401711 - 43401587
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtg 135  Q
    |||||||| |||| ||||||| ||||||||||||||   |||||||||||||||||||||||||||| || ||||||| ||||||||| |||||||||||    
T  43401711 tagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgccattgatacttgctccacagatcatagttggtattggtgtg 43401612  T
Q  136 agatttaagtccggaattcacaaca 160  Q
    | |||| |||||  |||||||||||    
T  43401611 aaatttgagtcccaaattcacaaca 43401587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 54593958 - 54594086
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcata--gtttgtattgg 131  Q
    |||||| || ||||||||| ||| ||||||||||||||   || |||||||||||||||| |||||||| || ||| ||| ||||||  |||||||||||    
T  54593958 tatagactatgtctatattcttgttattgcttgtggttatttatatttggttattggttgtcattgatacttgctctacatatcatatagtttgtattgg 54594057  T
Q  132 tgtgagatttaagtccggaattcacaaca 160  Q
    ||||| |||| ||||| ||||||||||||    
T  54594058 tgtgaaatttgagtcccgaattcacaaca 54594086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 55301885 - 55301758
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggttta----catttggttattggttgccattgatagttactccacaaatcatag--tttgtattggt 132  Q
    |||||||| |||| ||||||  ||||||||||||||||    ||||||||||||||||| |||||||| || |||||||  |||||   |||||||||||    
T  55301885 tagattagatctagattgtttttattgcttgtggtttattcacatttggttattggttgtcattgatacttgctccacacctcatataatttgtattggt 55301786  T
Q  133 gtgagatttaagtccggaattcacaaca 160  Q
    |||| |||| ||||||||||||||||||    
T  55301785 gtgaaatttgagtccggaattcacaaca 55301758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 49199379 - 49199253
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatc--atagtttgtattggtg 133  Q
    |||||||| |||| ||||||| ||||||||||||||   |||||||||||||||||||||||||||| || ||||||| |||  ||| ||||||||| ||    
T  49199379 tagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgccattgatacttgctccacacatcatataatttgtattgctg 49199280  T
Q  134 tgagatttaagtccggaattcacaacat 161  Q
    ||| |||| || || |||||||||||||    
T  49199279 tgaaatttgagacc-gaattcacaacat 49199253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 31340138 - 31340042
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgt 134  Q
    |||||| |||||||||||| ||| | ||||||||||||||| ||||||| ||||||||||||||||  | ||||||| || |||||||||||||||||    
T  31340138 tatagactaggtctatattattgttgttgcttgtggtttac-tttggttgttggttgccattgatacatgctccacacattatagtttgtattggtgt 31340042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 47304509 - 47304630
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtga 136  Q
    |||||| |||||||||||| ||| | ||||||||| ||||| ||||||| ||||||| |||||||| || ||||||| |||||||||||||||| |||||    
T  47304509 tatagactaggtctatattattgttgttgcttgtgatttac-tttggttgttggttgtcattgatacttgctccacacatcatagtttgtattgttgtga 47304607  T
Q  137 gatttaagtccggaattcacaacat 161  Q
      ||||||||| ||||||| |||||    
T  47304608 -ttttaagtcc-gaattcagaacat 47304630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 46860726 - 46860809
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatc 117  Q
    ||||||||||||||||||||||| | ||| ||||||||   |||||||||||||||||||||||||||| || |||||| ||||    
T  46860726 tatagattaggtctatattgttgttgttgtttgtggttatttacatttggttattggttgccattgatatttgctccacgaatc 46860809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 41819431 - 41819358
Alignment:
Q  44 taggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatc 117  Q
    |||||||||||||||| | ||||||||| ||||| ||||||| |||||||||||||||| || |||||| ||||    
T  41819431 taggtctatattgttgttgttgcttgtgatttacttttggttgttggttgccattgatacttgctccacgaatc 41819358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 40913553 - 40913646
Alignment:
Q  65 gcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||||||||| ||||||| ||||| |||||||||| || |||| || || || |||||||||||||||| |||| ||||| ||||||||||||    
T  40913553 gcttgtggtttac-tttggttgttggtcgccattgatacttgctccgcacattattgtttgtattggtgtgaaatttgagtcc-gaattcacaaca 40913646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 29196241 - 29196189
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||    
T  29196241 ctccacacatcatagtttgtattggtgtgagatttgagtcc-gaattcacaaca 29196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 34491456 - 34491557
Alignment:
Q  54 ttgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaatt 153  Q
    |||||| | |||||||||||| |  ||||||| |||||||||||| ||| || ||||||| || ||||||||||||||||| | |||| ||||| |||||    
T  34491456 ttgttgttgttgcttgtggttcat-tttggttgttggttgccattaatacttgctccacacattatagtttgtattggtgtaaaatttgagtcc-gaatt 34491553  T
Q  154 caca 157  Q
    ||||    
T  34491554 caca 34491557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 46173625 - 46173687
Alignment:
Q  50 tatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccaca 113  Q
    |||||| ||||| ||||||||||||||| ||||||| |||||||||||||||| || |||||||    
T  46173625 tatattattgctgttgcttgtggtttac-tttggttgttggttgccattgatacttgctccaca 46173687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 7764779 - 7764835
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaacat 161  Q
    ||||| |||| |||||||||||||||||||| || ||| |||||||||||||||||||    
T  7764779 ttacttcacacatcatagtttgtattggtgt-agttttgagtccggaattcacaacat 7764835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 29813378 - 29813430
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  29813378 ctccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 29813430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 4160103 - 4160054
Alignment:
Q  115 atcatagtttgtattggtgtgagatttaagtccggaattcacaacattttg 165  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||| ||||    
T  4160103 atcatagtttgtattggtgtgagttttgagtcc-gaattcacaacaatttg 4160054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 9635975 - 9635923
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||  ||| || |||||||||||||||    
T  9635975 ctccacacatcatagtttgtattggtgtga-ttttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 19683731 - 19683687
Alignment:
Q  115 atcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||    
T  19683731 atcatagtttgtattggtgtgag-tttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 29811185 - 29811237
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||||||||||| |||||||||||||||| ||| ||| | ||||||||||||    
T  29811185 ctccacaaatcatattttgtattggtgtgagttttgagttc-gaattcacaaca 29811237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 4510465 - 4510339
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggttta----catttggttattggttgccattgatagttactccacaaatcatagtttgtattggt 132  Q
    |||||| |||||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  4510465 tatagactaggtctatattgttgttattgcttgtggtttatttacatttggttattggttgccattgatacttgctccacacatcatagtttgtattggt 4510366  T
Q  133 gtgagatttaagtccggaattcacaaca 160  Q
    |||| |||| ||||| ||||||||||||    
T  4510365 gtgaaatttgagtcc-gaattcacaaca 4510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 4512307 - 4512181
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggttta----catttggttattggttgccattgatagttactccacaaatcatagtttgtattggt 132  Q
    |||||| |||||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  4512307 tatagactaggtctatattgttgttattgcttgtggtttatttacatttggttattggttgccattgatacttgctccacacatcatagtttgtattggt 4512208  T
Q  133 gtgagatttaagtccggaattcacaaca 160  Q
    |||| |||| ||||| ||||||||||||    
T  4512207 gtgaaatttgagtcc-gaattcacaaca 4512181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 2360891 - 2360795
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtga 136  Q
    |||| ||||||||||||| || | ||||||||| ||||| ||||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||    
T  2360891 tagactaggtctatattgatgttgttgcttgtgatttac-tttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtga 2360795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 4508623 - 4508499
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttac----atttggttattggttgccattgatagttactccacaaatcatagtttgtattggt 132  Q
    |||||| |||||||||||||||| ||||||||||||||||     |||||||||||||||| |||||||| || || || |  |||||||||||||||||    
T  4508623 tatagactaggtctatattgttgttattgcttgtggtttatttatatttggttattggttggcattgatacttgcttcatacttcatagtttgtattggt 4508524  T
Q  133 gtgagatttaagtccggaattcacaa 158  Q
    |||| |||| || || ||||||||||    
T  4508523 gtgaaatttgagacc-gaattcacaa 4508499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 6359866 - 6359768
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtga 136  Q
    |||||| ||||| |||||| ||| | ||||||||||||||| ||||||| |||||| ||||||||| || ||||||| |||||||||||||||| |||||    
T  6359866 tatagactaggtatatattattgttgttgcttgtggtttac-tttggttgttggttcccattgatacttgctccacacatcatagtttgtattgatgtga 6359768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 32357964 - 32357848
Alignment:
Q  44 taggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatc--atagtttgtattggtgtgagattt 141  Q
    |||||||||||| ||| | ||||||||||||||| ||||||| ||||||| |||||||| |||||||||| |||  ||| ||||||||||||||| ||||    
T  32357964 taggtctatattattgttgttgcttgtggtttac-tttggttgttggttgtcattgatacttactccacacatcatataatttgtattggtgtgaaattt 32357866  T
Q  142 aagtccggaattcacaaca 160  Q
      |||| ||||||||||||    
T  32357865 gtgtcc-gaattcacaaca 32357848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 34310631 - 34310544
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggt----ttacatttggttattggttgccattgatagttactccacaaatcata 120  Q
    |||||| |||||||||||||||| |||||||||||||    |||||||||||||||||||| |||||||| || ||||||| ||||||    
T  34310631 tatagactaggtctatattgttgttattgcttgtggtctatttacatttggttattggttgtcattgatacttgctccacacatcata 34310544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 22270217 - 22270323
Alignment:
Q  54 ttgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaatt 153  Q
    |||||| | |||||||||||| |  ||||||| |||||||||||||||| || ||||||| |||||||||||||||| ||||| |||| ||||| |||||    
T  22270217 ttgttgttgttgcttgtggttaat-tttggttgttggttgccattgatacttgctccacacatcatagtttgtattgctgtgaaatttgagtcc-gaatt 22270314  T
Q  154 cacaacatt 162  Q
    || ||||||    
T  22270315 cataacatt 22270323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 30814666 - 30814770
Alignment:
Q  54 ttgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaatt 153  Q
    |||||| | |||||||||||| |  ||||||| |||||||||||||||| || ||||||| |||||| |||||| |||||||| |||| ||||| |||||    
T  30814666 ttgttgttgttgcttgtggttaat-tttggttgttggttgccattgatacttgctccacacatcatattttgtactggtgtgaaatttgagtcc-gaatt 30814763  T
Q  154 cacaaca 160  Q
    |||||||    
T  30814764 cacaaca 30814770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 6430431 - 6430496
Alignment:
Q  94 ccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||||| || ||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  6430431 ccattgatacttgctccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 6430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 26417630 - 26417686
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaacat 161  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  26417630 ttactccacatatcatagtttgtattggtgtgagttttgagtcc-gaattcacaacat 26417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 3259248 - 3259314
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgata 102  Q
    |||||||| |||| ||||||| ||||||||||||||   ||||||||||||||||||| ||||||||    
T  3259248 tagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgtcattgata 3259314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 18126960 - 18127015
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  18126960 ttactccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 18127015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 2390539 - 2390620
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatc 117  Q
    |||||||| |||| ||||||| ||||| ||||||||   ||||||||||||||||||| |||||||| || |||||| ||||    
T  2390539 tagattagatctagattgttgttattgattgtggttatttacatttggttattggttgtcattgatacttgctccactaatc 2390620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 8359230 - 8359152
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatc 117  Q
    |||||||| |||| ||||||| | ||||||||| ||||| |||| || |||||||||||||||| || |||||| ||||    
T  8359230 tagattagatctagattgttgttgttgcttgtgatttacttttgattgttggttgccattgatacttgctccacgaatc 8359152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 14069685 - 14069633
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  14069685 ctccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 14069633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 14379713 - 14379661
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  14379713 ctccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 14379661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 23555358 - 23555410
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  23555358 ctccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 23555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 43864558 - 43864602
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccg 148  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||||    
T  43864558 ttactccacacatcatagtttgtattggtgtgagttttgagtccg 43864602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 47675988 - 47675934
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaacatt 162  Q
    ||||||| ||||||||||||||||||||||| |||  |||| ||||||||||||||    
T  47675988 ctccacacatcatagtttgtattggtgtgagttttgtgtcc-gaattcacaacatt 47675934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 4586478 - 4586530
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||  ||||||||||||||| ||||| ||||||||||||    
T  4586478 ctccacacatcatagtttacattggtgtgagatttgagtcc-gaattcacaaca 4586530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 31732820 - 31732768
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||| ||||||||||||    
T  31732820 ctccacacatcatagtttgtactggtgtgagttttgagtcc-gaattcacaaca 31732768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 41317282 - 41317238
Alignment:
Q  115 atcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||    
T  41317282 atcatagtttgtattggtgtgagatttgagttc-gaattcacaaca 41317238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 17758278 - 17758402
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtg 135  Q
    |||||||| |||| ||||||| ||||||||| ||||   |||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  17758278 tagattagatctagattgttgttattgcttgcggttatttacatttggttattggttgccattgatacttgctccacacatcatagtttgtattggtgtg 17758377  T
Q  136 agatttaagtccggaattcacaaca 160  Q
    | |||| ||||| ||||||||||||    
T  17758378 aaatttgagtcccgaattcacaaca 17758402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 21589182 - 21589308
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacattt---ggttattggttgccattgatagttactccacaaatcatagtttgtattggtg 133  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||   |||| |||||| ||||||||| || ||||||| |||||||||| ||||||||    
T  21589182 tatagactaggtctatattgttgttattgcttgtggttaacattttttggttgttggtttccattgatacttgctccacacatcatagtttatattggtg 21589281  T
Q  134 tgagatttaagtccggaattcacaaca 160  Q
    ||| |||| ||||| ||||||||||||    
T  21589282 tgaaatttgagtccagaattcacaaca 21589308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 3808618 - 3808517
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtg 135  Q
    |||||||| |||| |||||||||||||||| |||||   |||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  3808618 tagattagatctagattgttgctattgcttttggttatttacatttgattattggttgccattgatacttgctccacatatcatagtttgtattggtgtg 3808519  T
Q  136 ag 137  Q
    ||    
T  3808518 ag 3808517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 5043919 - 5044006
Alignment:
Q  73 tttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||||||||||||||||| ||||||||  | ||||||| |||||||||||||||||||||| ||||||||| |||||||||||||    
T  5043919 tttacatttggttattggttgtcattgatacgtgctccacacatcatagtttgtattggtgtgaaatttaagtcaggaattcacaaca 5044006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 26830037 - 26829909
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatc--atagtttgtattgg 131  Q
    |||||| ||||| |||||||||| ||||||||||||||   |||||||||||||||||| ||||||||| || ||||||| |||  ||||||||||||||    
T  26830037 tatagactaggtttatattgttgttattgcttgtggttatttacatttggttattggtttccattgatacttgctccacacatcatatagtttgtattgg 26829938  T
Q  132 tgtgagatttaagtccggaattcacaaca 160  Q
    ||||| |||| || || ||||||||||||    
T  26829937 tgtgaaatttgagccccgaattcacaaca 26829909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 17763245 - 17763369
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtg 135  Q
    |||||||| |||| ||||||| ||||| ||||| ||   ||||||||||||||||||| |||||||| || ||||||| |||||||||| ||||||||||    
T  17763245 tagattagatctagattgttgttattgtttgtgattatttacatttggttattggttgtcattgatacttgctccacacatcatagtttatattggtgtg 17763344  T
Q  136 agatttaagtccggaattcacaaca 160  Q
    | |||| ||||| ||||||||||||    
T  17763345 aaatttgagtcccgaattcacaaca 17763369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 603007 - 602903
Alignment:
Q  54 ttgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaatt 153  Q
    |||||| | ||||||||||||||  |||| || |||||||||||||||| || ||||||| ||||||||||||||||||||||| ||| ||||| |||||    
T  603007 ttgttgttgttgcttgtggtttat-tttgattgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgagttttgagtcc-gaatt 602910  T
Q  154 cacaaca 160  Q
    |||||||    
T  602909 cacaaca 602903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 22424701 - 22424626
Alignment:
Q  73 tttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccg 148  Q
    |||||||||||||||||||| ||||||||| || ||||||| |||||||||||||||  ||||| |||| ||||||    
T  22424701 tttacatttggttattggttaccattgatacttgctccacacatcatagtttgtattaatgtgaaatttgagtccg 22424626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 26800841 - 26800922
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggt---ttacatttggttattggttgccattgatagttactccacaaatc 117  Q
    |||| ||| |||| ||||||| |||||||||||||   ||||||||||||||||||||||||||||| || |||||| ||||    
T  26800841 tagactagatctagattgttgttattgcttgtggtaatttacatttggttattggttgccattgatacttgctccacgaatc 26800922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 5406057 - 5406002
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||||||| ||||||||||||||||||||||  |||||| |||||||||||||||    
T  5406057 ttactccacacatcatagtttgtattggtgtga-ctttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 5410382 - 5410327
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||||||| ||||||||||||||||||||||  |||||| |||||||||||||||    
T  5410382 ttactccacacatcatagtttgtattggtgtga-ctttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 2972852 - 2972784
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgata 102  Q
    |||||| |||||||||||||||| | ||| ||||||||   |||||||| |||||||||||||||||||    
T  2972852 tatagactaggtctatattgttgttgttgtttgtggttatttacatttgattattggttgccattgata 2972784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 22963560 - 22963507
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaacat 161  Q
    ||||||| ||||||||||||||||||||||  ||| |||| ||||||||||||||    
T  22963560 ctccacacatcatagtttgtattggtgtga-ttttgagtctggaattcacaacat 22963507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 23824833 - 23824886
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaacat 161  Q
    ||||||| ||||||||||||||||||||||  ||| |||| ||||||||||||||    
T  23824833 ctccacacatcatagtttgtattggtgtga-ttttgagtctggaattcacaacat 23824886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 33160202 - 33160150
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| |||||||||||||||||| |||  |||| |||||||||||||||||    
T  33160202 ctccacacatcatagtttgtattggtatga-ttttatgtccggaattcacaaca 33160150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 2209972 - 2210096
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtg 135  Q
    |||||||| |||| ||||||| ||||| ||||||||   |||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  2209972 tagattagatctagattgttgttattgtttgtggttatttacatttggttattggttgccattgatacttgctccacacatcatagtttgtattggtgtg 2210071  T
Q  136 agatttaagtccggaattcacaaca 160  Q
    | |||| ||||||||||| ||||||    
T  2210072 aaatttgagtccggaattaacaaca 2210096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 40632696 - 40632825
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtgg----tttacatttggttattggttgccattgatagttactccacaaatc--atagtttgtattg 130  Q
    |||||| |||||||||||||||| ||||||||||||    |||||||||||||||||||||||||||||| || ||| ||| |||  |||||||||||||    
T  40632696 tatagactaggtctatattgttgttattgcttgtggtttatttacatttggttattggttgccattgatacttgctctacacatcatatagtttgtattg 40632795  T
Q  131 gtgtgagatttaagtccggaattcacaaca 160  Q
    |||||  |||| ||||||||||||||||||    
T  40632796 gtgtgtaatttgagtccggaattcacaaca 40632825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 41639705 - 41639801
Alignment:
Q  63 ttgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| ||||| |||| ||| | ||||||||||||    
T  41639705 ttgcttgtggtttacatttggttattggttgccattgatacttgctccacacatcatagtttgtattgatgtgaaatttgagt-ctgaattcacaaca 41639801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 50673764 - 50673638
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggt---ttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtg 133  Q
    |||||| ||| |||||||||||| |||||||| ||||   |||||||||||||||||||| |||||||| || ||||||| |||||| ||||||||  ||    
T  50673764 tatagactagatctatattgttgttattgcttatggtgatttacatttggttattggttgacattgatacttgctccacacatcataatttgtattaatg 50673665  T
Q  134 tgagatttaagtccggaattcacaaca 160  Q
    ||  |||| ||||||||||||||||||    
T  50673664 tgtaatttgagtccggaattcacaaca 50673638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 21688497 - 21688620
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtga 136  Q
    |||||| ||| |||||||| ||| | |||||||||||| | |||| ||| ||| ||| |||||||| || ||||||| ||||||||||||||| |||| |    
T  21688497 tatagactagatctatattattgttgttgcttgtggttaatatttagttgttgattgtcattgatacttgctccacacatcatagtttgtattagtgtaa 21688596  T
Q  137 gatttaagtccggaattcacaaca 160  Q
     |||| ||| || |||||||||||    
T  21688597 aatttgagttcgaaattcacaaca 21688620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 50262559 - 50262487
Alignment:
Q  87 ttggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| |||||||| || ||||||| |||||||||||||||||||||| |||| ||| | ||||||||||||    
T  50262559 ttggttgtcattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 50262487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 6656222 - 6656305
Alignment:
Q  79 tttggttattggttgccattgatagttactccacaaatcatagtttg--tattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| |||| || |||||||| || ||||||| |||||||||||  ||||| ||||| |||| ||||||||||||||||||    
T  6656222 tttggttgttggatgtcattgatacttgctccacacatcatagtttgtttattgatgtgaaatttgagtccggaattcacaaca 6656305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 12739408 - 12739353
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  12739408 ttactccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 12739353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 54881562 - 54881629
Alignment:
Q  44 taggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccac 112  Q
    |||||||||||||||| ||||||||||||||||  ||||||| ||||||| |||||||| || ||||||    
T  54881562 taggtctatattgttgttattgcttgtggttta-ttttggttgttggttgtcattgatacttgctccac 54881629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 41964667 - 41964748
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatc 117  Q
    |||||||| |||| ||||||| ||||||||||||||   |||||||| || |||||||||||||||| || |||||| ||||    
T  41964667 tagattagatctagattgttgttattgcttgtggttatttacatttgattgttggttgccattgatacttgctccacgaatc 41964748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 379632 - 379715
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatc 117  Q
    |||||| |||||||||||||||| | ||| ||||||||   |||||||| ||||||||||||| ||||| || |||||| ||||    
T  379632 tatagactaggtctatattgttgttgttgtttgtggttatttacatttgattattggttgccactgatacttgctccacgaatc 379715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 26175488 - 26175436
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  26175488 ctccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 26175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 48143365 - 48143417
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||  ||| ||||||||||||||||||    
T  48143365 ctccacacatcatagtttgtattggtgtga-ttttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 5369936 - 5369881
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||||||| ||||||||||||||||||||||  ||| || |||||||||||||||    
T  5369936 ttactccacacatcatagtttgtattggtgtga-ttttgagaccggaattcacaaca 5369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 35662692 - 35662771
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatc 117  Q
    |||||| || ||||||||||||| | |||||| ||||| |  ||||||| |||||||||||||||| || |||||||||||    
T  35662692 tatagactatgtctatattgttgttgttgcttatggttaat-tttggttgttggttgccattgatacttgctccacaaatc 35662771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 12743780 - 12743728
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| | ||||||||||||||||||||| ||| ||||| ||||||||||||    
T  12743780 ctccacacaacatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 12743728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 29999680 - 29999628
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||  ||| || |||||||||||||||    
T  29999680 ctccacacatcatagtttgtattggtgtga-ttttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 37740942 - 37740983
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccg 148  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||    
T  37740942 ctccacacatcatagtttgtattggtgtgagttttgagtccg 37740983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 46703840 - 46703884
Alignment:
Q  73 tttacatttggttattggttgccattgatagttactccacaaatc 117  Q
    |||||||||||||||||||||  ||||||| ||||||||| ||||    
T  46703840 tttacatttggttattggttgttattgatacttactccacgaatc 46703884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 52467206 - 52467159
Alignment:
Q  110 cacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaa 158  Q
    |||| ||||||||||||||||||||||| ||| ||||| ||||||||||    
T  52467206 cacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaa 52467159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 17917 - 17793
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtg 135  Q
    |||||||| |||| ||||||| ||||||||||||||   |||||||| ||||||||||| ||||||| || || |||| |||||||||||||||||||||    
T  17917 tagattagatctagattgttgttattgcttgtggttatttacatttgattattggttgctattgatacttgctacacacatcatagtttgtattggtgtg 17818  T
Q  136 agatttaagtccggaattcacaaca 160  Q
    | |||| ||||| ||||||| ||||    
T  17817 aaatttgagtccagaattcataaca 17793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 7593 - 7703
Alignment:
Q  50 tatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaag-tccg 148  Q
    |||||| ||| | ||||||||||||||| ||||||| |||||||||||||||| || ||||||| |||||||||||||||||||||| |||| || ||||    
T  7593 tatattattgttgttgcttgtggtttac-tttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagttccg 7691  T
Q  149 gaattcacaaca 160  Q
     |||||||||||    
T  7692 aaattcacaaca 7703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 13548916 - 13548792
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcata--gtttgtattggtgt 134  Q
    |||||| |||||||||||| ||| | ||||||||||||||| ||||||| ||||||| |||||||| || ||||||| ||||||  ||||||||||||||    
T  13548916 tatagactaggtctatattattgttgttgcttgtggtttac-tttggttgttggttgtcattgatacttgctccacacatcatatagtttgtattggtgt 13548818  T
Q  135 gagatttaagtccggaattcacaaca 160  Q
    || |||| ||| | ||||||||||||    
T  13548817 gaaatttgagttcagaattcacaaca 13548792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 37876683 - 37876571
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggttta----catttggttattggttgccattgatagttactccacaaatc--atagtttgtattg 130  Q
    |||||| |||||||||| ||||| | ||||||||||||||    |||||||||||||||||||||||||| || ||||||| |||  |||||||||||||    
T  37876683 tatagactaggtctatagtgttgtttttgcttgtggtttatttacatttggttattggttgccattgatacttgctccacacatcatatagtttgtattg 37876584  T
Q  131 gtgtgagatttaa 143  Q
    |||||| ||||||    
T  37876583 gtgtgaaatttaa 37876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 11348952 - 11349080
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtgg---tttacatttggttattggttgccattgatagttactccacaaatc--atagtttgtattgg 131  Q
    |||||| |||||||||||||||| ||||||||||||   |||||||||| |||||  ||| |||||||| || ||||||| |||  ||||||||||||||    
T  11348952 tatagactaggtctatattgttgttattgcttgtggttatttacatttgattattaattgtcattgatacttgctccacacatcatatagtttgtattgg 11349051  T
Q  132 tgtgagatttaagtccggaattcacaaca 160  Q
    ||| | |||| ||||| ||||||||||||    
T  11349052 tgtaaaatttgagtcccgaattcacaaca 11349080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 37032983 - 37032876
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatc--atagtttgtattggtg 133  Q
    |||||||| |||| ||||||| ||||||||||||||   |||||||||||||||||||||||||||| || ||||||| |||  ||||||||||||| ||    
T  37032983 tagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgccattgatatttgctccacacatcatatagtttgtattgttg 37032884  T
Q  134 tgagattt 141  Q
    ||| ||||    
T  37032883 tgaaattt 37032876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 47255253 - 47255150
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtga 136  Q
    |||||| |||||||||||| ||| | |||||| |||||||| ||||||| ||||||||||||||||  | ||||||| |||||||||| |||||||||||    
T  47255253 tatagactaggtctatattattgttgttgcttatggtttac-tttggttgttggttgccattgatacctgctccacacatcatagtttatattggtgtga 47255155  T
Q  137 gattt 141  Q
     ||||    
T  47255154 aattt 47255150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 29136499 - 29136596
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatcatagtttgtattgg 131  Q
    |||||| ||||||||| |||||| ||||||||||||||   || |||||||||||||||| ||||| || || ||||||| |||||||||||||||||    
T  29136499 tatagactaggtctattttgttgttattgcttgtggttagttatatttggttattggttgtcattggtacttgctccacacatcatagtttgtattgg 29136596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 13547002 - 13546886
Alignment:
Q  44 taggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaat--catagtttgtattggtgtgagattt 141  Q
    |||||||||||| ||| | ||||||||||||||| ||||||| |||||||||||||||| || ||||||| ||   |||||||||||||||| || ||||    
T  13547002 taggtctatattattgttgttgcttgtggtttac-tttggttgttggttgccattgatacttgctccacacattatatagtttgtattggtgagaaattt 13546904  T
Q  142 aagtccggaattcacaaca 160  Q
     || || ||||||||||||    
T  13546903 gagacc-gaattcacaaca 13546886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 42297888 - 42297791
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtga 136  Q
    |||||| | ||| |||||| ||| |||||||| ||||| |  ||||||| |||||||||||||||| || ||||||| ||||||||||| ||||||||||    
T  42297888 tatagacttggtatatattattgttattgcttatggttaa--tttggttgttggttgccattgatactttctccacacatcatagtttggattggtgtga 42297791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 194773 - 194837
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgata 102  Q
    |||||| |||||||||||| ||| | ||||||||||||||| ||||||| ||||||||||||||||    
T  194773 tatagactaggtctatattattgttgttgcttgtggtttac-tttggttgttggttgccattgata 194837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 19752952 - 19753032
Alignment:
Q  79 tttggttattggttgccattgatagttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| |||||||||||||||| || || | || |||||||||||||||||||||| |||| ||| | ||||||||||||    
T  19752952 tttggttgttggttgccattgatacttgcttcgcacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 19753032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 28220077 - 28220026
Alignment:
Q  108 tccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    |||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  28220077 tccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 28220026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 31925623 - 31925560
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgata 102  Q
    |||||| |||||||||||| ||| ||||||||||||||   |||||||| ||||||| ||||||||    
T  31925623 tatagactaggtctatattattgttattgcttgtggtt--aatttggttgttggttgtcattgata 31925560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 20762985 - 20763037
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||  ||| || |||||||||||||||    
T  20762985 ctccacacatcatagtttgtattggtgtga-ttttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 28223273 - 28223221
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||    
T  28223273 ctccacacatcatagtttgtattggtctgagttttgagtcc-gaattcacaaca 28223221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 1833822 - 1833854
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtga 136  Q
    |||||||||| ||||||||||||||||||||||    
T  1833822 ttactccacagatcatagtttgtattggtgtga 1833854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 19754772 - 19754824
Alignment:
Q  89 ggttgccattgatagttactccacaaatcatagtttgtattggtgtgagattt 141  Q
    ||||| |||||||| || ||||||| |||||||||| ||||||||||| ||||    
T  19754772 ggttgtcattgatacttgctccacacatcatagtttctattggtgtgaaattt 19754824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 28242596 - 28242640
Alignment:
Q  73 tttacatttggttattggttgccattgatagttactccacaaatc 117  Q
    ||||||||||||||||||||| |||||||| || |||||| ||||    
T  28242596 tttacatttggttattggttgtcattgatacttgctccacgaatc 28242640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 28265413 - 28265381
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtga 136  Q
    |||||||||| ||||||||||||||||||||||    
T  28265413 ttactccacacatcatagtttgtattggtgtga 28265381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 34603854 - 34603898
Alignment:
Q  73 tttacatttggttattggttgccattgatagttactccacaaatc 117  Q
    |||||||||| |||||||||| |||||||| || |||||||||||    
T  34603854 tttacatttgattattggttgtcattgatacttgctccacaaatc 34603898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 37503416 - 37503384
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtga 136  Q
    |||||||||| ||||||||||||||||||||||    
T  37503416 ttactccacacatcatagtttgtattggtgtga 37503384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 45727178 - 45727305
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggttta----catttggttattggttgccattgatagttactccacaaatc--atagtttgtattg 130  Q
    |||||| |||||||||||| ||| | ||||||||||||||    |||||||||||| ||||||||||||| || ||||||| |||  |||||||||||||    
T  45727178 tatagactaggtctatattattgttgttgcttgtggtttatttacatttggttattagttgccattgatacttgctccacacatcatatagtttgtattg 45727277  T
Q  131 gtgtgagatttaagtccggaattcacaac 159  Q
    |||||| |||| ||| | |||||||||||    
T  45727278 gtgtgaaatttgagt-ctgaattcacaac 45727305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 1631637 - 1631521
Alignment:
Q  50 tatattgttgctattgcttgtggtttac----atttggttattggttgccattgatagttactccacaaatcata--gtttgtattggtgtgagatttaa 143  Q
    |||||||||| ||||||||||||||||     |||||||| ||||||| |||||||| |||||||||| ||||||  |||||||||| ||||| |||| |    
T  1631637 tatattgttgttattgcttgtggtttatttatatttggttgttggttgtcattgatacttactccacacatcatatagtttgtattgatgtgaaatttga 1631538  T
Q  144 gtccggaattcacaaca 160  Q
     ||| | ||||||||||    
T  1631537 atcccggattcacaaca 1631521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 42288025 - 42287959
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgata 102  Q
    |||||||| |||| ||||||| ||||||||||||||   ||||||||||||||||||||||||||||    
T  42288025 tagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgccattgata 42287959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 17450830 - 17450893
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtttacatttggttattggttgccattgata 102  Q
    |||||||||| || ||||||| | ||||||||| ||||||||||||||| ||||| ||||||||    
T  17450830 tagattaggtttagattgttgttgttgcttgtgatttacatttggttatcggttgtcattgata 17450893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 11690804 - 11690856
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  11690804 ctccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaaca 11690856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 4502987 - 4502932
Alignment:
Q  104 ttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaacat 161  Q
    |||||||||| || |||||||||||||||||  ||||| || ||||||||||||||||    
T  4502987 ttactccacacattatagtttgtattggtgt--gatttgagaccggaattcacaacat 4502932  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 29868185 - 29868237
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| |||||||||||||||| ||||| |||| ||||| ||||||||||||    
T  29868185 ctccacacatcatagtttgtattgctgtgaaatttgagtcc-gaattcacaaca 29868237  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 11384238 - 11384366
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatc--atagtttg--tattgg 131  Q
    |||||||| |||| ||||||| ||||||||||||||   ||||||||||||||| ||| || ||||| |||||||||| |||  ||| ||||  ||||||    
T  11384238 tagattagatctagattgttgttattgcttgtggttatttacatttggttattgcttgtcaatgatacttactccacacatcatataatttgtatattgg 11384337  T
Q  132 tgtgagatttaagtccggaattcacaaca 160  Q
    ||||| |||| ||||| || |||||||||    
T  11384338 tgtgaaatttgagtccagagttcacaaca 11384366  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 42434908 - 42434779
Alignment:
Q  37 tatagattaggtctat--attgttgctattgcttgtggtttacattt--ggttattggttgccattgatagttactccacaaatcata--gtttgtattg 130  Q
    |||||| |||||||||  ||||||| | |||||||||||| ||||||  |||| |||||||||||||||| || |||| || ||||||  ||||||||||    
T  42434908 tatagactaggtctatctattgttgttgttgcttgtggttaacatttttggttgttggttgccattgatacttgctcctcacatcatatagtttgtattg 42434809  T
Q  131 gtgtgagatttaagtccggaattcacaaca 160  Q
    |||||| |||| ||| |  |||||||||||    
T  42434808 gtgtgaaatttgagttccaaattcacaaca 42434779  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 18655654 - 18655738
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgatagttactccacaaatca 118  Q
    |||||| ||| |||||||||||| ||||||||||| ||   ||||||||||||||||||| |||||||| || ||||||| ||||    
T  18655654 tatagactagatctatattgttgttattgcttgtgtttatttacatttggttattggttgtcattgatatttgctccacacatca 18655738  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 15213103 - 15213156
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaacat 161  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  15213103 ctccacacatcatagtttgtattggtgtgagttttgagtcc-gaattcacaacat 15213156  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 3303522 - 3303481
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccg 148  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  3303522 ctccacacatcatagtttgtattggtgtgagatttgagtccg 3303481  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 4743079 - 4743027
Alignment:
Q  107 ctccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 160  Q
    ||||||| || |||||||||||||||||||||||| ||||| ||||||||||||    
T  4743079 ctccacacattatagtttgtattggtgtgagatttgagtcc-gaattcacaaca 4743027  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 4283775 - 4283813
Alignment:
Q  37 tatagattaggtctatattgttgctattgcttgtggttt 75  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  4283775 tatagactaggtctatattgttgttattgcttgtggttt 4283813  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 40329029 - 40329095
Alignment:
Q  39 tagattaggtctatattgttgctattgcttgtggtt---tacatttggttattggttgccattgata 102  Q
    |||||||| |||| | ||||| ||||||||||||||   ||||||||||| ||||||| ||||||||    
T  40329029 tagattagatctagactgttgttattgcttgtggttatttacatttggttgttggttgtcattgata 40329095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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