View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_high_15 (Length: 251)

Name: NF1167_high_15
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_high_15
NF1167_high_15
[»] chr2 (3 HSPs)
chr2 (178-241)||(690187-690250)
chr2 (48-122)||(690309-690382)
chr2 (1-49)||(690422-690470)
[»] chr3 (1 HSPs)
chr3 (183-240)||(37620038-37620095)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 690250 - 690187
Alignment:
Q  178 atgtcttatttgggagtccaaactcctttctaaaatgggtcaagtggtctattaatgttctctg 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  690250 atgtcttatttgggagtccaaactcctttctaaaatgggtcaagtggtctattaatgtcctctg 690187  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 690382 - 690309
Alignment:
Q  48 ctcttctcacaacaaaaaacacgctcactcccaactgaactgctaaaatacccttgtgtgagttaagttacgcta 122  Q
    |||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  690382 ctcttctcccaacaaaaaa-acgctcactcccaacagaactgccaaaatacccttgtgtgagttaagttatgcta 690309  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 690470 - 690422
Alignment:
Q  1 ttttgtagattggggtaaaatatttttagaagatattaaaaatgcgcct 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  690470 ttttgtagattggggtaaaatatttttagaagatattaaaaatgcgcct 690422  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 37620095 - 37620038
Alignment:
Q  183 ttatttgggagtccaaactcctttctaaaatgggtcaagtggtctattaatgttctct 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  37620095 ttatttgggagtccaaactcctttctgaaatgggtcaagtggtctattaatgtcctct 37620038  T

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