View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_high_2 (Length: 454)

Name: NF1167_high_2
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_high_2
NF1167_high_2
[»] chr7 (3 HSPs)
chr7 (216-311)||(31112617-31112712)
chr7 (16-113)||(31112418-31112515)
chr7 (378-425)||(31112778-31112825)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 31112617 - 31112712
Alignment:
Q  216 tttgagatgctcaaatataagagttgttattgaaaacttaaaaaacaccgtaagatttctcaatagatttttggcagtgatatcatgtatatttaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31112617 tttgagatgctcaaatataagagttgttattgaaaacttaaaaaacaccgtaagatttctcaatagatttttggcagtgatatcatgtatatttaa 31112712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 31112418 - 31112515
Alignment:
Q  16 atagcaatcatgtagacaaagctatgcgattattcgattgagtacgaacgatccagagttcaaagtcaataattctaagttacgaaaatacctccttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31112418 atagcaatcatgtagacaaagctatgcgattattcgattgagtacgaacgatccagagttcaaagtcaataattctaagttacgaaaatacttccttc 31112515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 425
Target Start/End: Original strand, 31112778 - 31112825
Alignment:
Q  378 tagggaacctttagctcatttaatcatttcattctttaactacactac 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31112778 tagggaacctttagctcatttaatcatttcattctttaactacactac 31112825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University