View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_high_3 (Length: 396)

Name: NF1167_high_3
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_high_3
NF1167_high_3
[»] chr5 (15 HSPs)
chr5 (17-396)||(39168811-39169193)
chr5 (109-396)||(40418248-40418529)
chr5 (109-396)||(39879779-39880066)
chr5 (112-396)||(39726383-39726667)
chr5 (112-396)||(38987670-38987948)
chr5 (61-396)||(39399824-39400144)
chr5 (109-233)||(3299640-3299767)
chr5 (109-233)||(3392533-3392660)
chr5 (277-396)||(3299498-3299620)
chr5 (277-396)||(3392391-3392513)
chr5 (112-219)||(1163564-1163674)
chr5 (112-219)||(1850065-1850175)
chr5 (283-384)||(1163693-1163794)
chr5 (283-384)||(1849942-1850046)
chr5 (279-385)||(40102209-40102315)
[»] chr4 (2 HSPs)
chr4 (112-396)||(25912130-25912411)
chr4 (96-349)||(44444596-44444838)


Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 39169193 - 39168811
Alignment:
Q  17 gagggtcttgtaaagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169193 gagggtcttgtaaagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtctt 39169094  T
Q  117 gttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaa---ttctaccattttcttcatcataactactcttggtaat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  39169093 gttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcatcataactactcttggtaat 39168994  T
Q  214 caaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcatgaccaagagcatagtcaccggatttt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||    
T  39168993 caaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttctttacgtccagacaagtcataaccaagagcatagtcaccggatttt 39168894  T
Q  314 aaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagc 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168893 aaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagc 39168811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 109 - 396
Target Start/End: Complemental strand, 40418529 - 40418248
Alignment:
Q  109 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttg 208  Q
    |||||||||||||||||| || || ||||||||||||||||||||||||||||| | || | |||||| ||||||||| |||||  |||||||| |||||    
T  40418529 agtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaactctaccattctcttcggcataactaatcttg 40418430  T
Q  209 gtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcatgaccaagagcatagtcaccgg 308  Q
    || |||||||| ||||||||||||| |  |||||| ||||||| |||||||||| ||      |||||||||| ||||| ||||||||||| ||||||||    
T  40418429 gtgatcaaaatggcagcaggaaggttgatattgatgttggtgtcagctcctccttct------cctccagacaggtcataaccaagagcatggtcaccgg 40418336  T
Q  309 attttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagc 396  Q
     |||||||||| |||| ||||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  40418335 gttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacagcatcagc 40418248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 109 - 396
Target Start/End: Complemental strand, 39880066 - 39879779
Alignment:
Q  109 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttg 208  Q
    ||||| |||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| |||||    
T  39880066 agtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttg 39879967  T
Q  209 gtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcatgaccaagagcatagtcaccgg 308  Q
     | |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| || ||  ||||||||||| ||||| ||||||||||| ||||||||    
T  39879966 ctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgg 39879867  T
Q  309 attttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagc 396  Q
     |||||||||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  39879866 gttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagc 39879779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 112 - 396
Target Start/End: Complemental strand, 39726667 - 39726383
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 211  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| |     
T  39726667 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctg 39726568  T
Q  212 atcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcatgaccaagagcatagtcaccggatt 311  Q
    |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| || ||  ||||||||||| ||||| ||||||||||| |||||||| ||    
T  39726567 atcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggtt 39726468  T
Q  312 ttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagc 396  Q
    |||| ||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  39726467 ttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagc 39726383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 112 - 396
Target Start/End: Complemental strand, 38987948 - 38987670
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 211  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| |     
T  38987948 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctg 38987849  T
Q  212 atcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcatgaccaagagcatagtcaccggatt 311  Q
    |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| ||      |||||||||| ||||| ||||||||||| |||||||| ||    
T  38987848 atcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttct------cctccagacaggtcataaccaagagcatggtcaccgggtt 38987755  T
Q  312 ttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagc 396  Q
    |||| ||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  38987754 ttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagc 38987670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 61 - 396
Target Start/End: Complemental strand, 39400144 - 39399824
Alignment:
Q  61 gtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccactta 160  Q
    ||||| || |||||| ||||||||||||||| |  ||||||||||| ||| | |||||  |||||||| ||| ||||||||||||||||||| |||||||    
T  39400144 gtggttgggttgatttcggtacattgctgctgcgttgaaggtgagatgagggccttgtcttagatcttctaagaagagttgataatcagattgccactta 39400045  T
Q  161 tcctcaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggt---cgccattgata---ttggtgttag 254  Q
    |||  || ||||||   || |         |||||| || || |||||| |||||||||||||||||| | ||   ||||||||||    ||||||||||    
T  39400044 tccggaataacaactgatcca---------tcatcacaattagtcttggcaatcaaaattgcagcaggcaagtagccgccattgatgatgttggtgttag 39399954  T
Q  255 ctcctcctccttcttttcctccagacaagtcatgaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtc 354  Q
    ||||||||||            ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  39399953 ctcctcctcc------------agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtgtc 39399866  T
Q  355 attatttccaaaatcttccacacgagcaaccacggcatcagc 396  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  39399865 attatttccaaaattttccacacgagcaaccacggcatcagc 39399824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 3299767 - 3299640
Alignment:
Q  109 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactc 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| |     
T  3299767 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatt 3299668  T
Q  206 ttggtaatcaaaattgcagcaggaaggt 233  Q
    ||||| |||||||| |||||||||||||    
T  3299667 ttggtgatcaaaatggcagcaggaaggt 3299640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 3392660 - 3392533
Alignment:
Q  109 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactc 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| |     
T  3392660 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatt 3392561  T
Q  206 ttggtaatcaaaattgcagcaggaaggt 233  Q
    ||||| |||||||| |||||||||||||    
T  3392560 ttggtgatcaaaatggcagcaggaaggt 3392533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 396
Target Start/End: Complemental strand, 3299620 - 3299498
Alignment:
Q  277 agacaagtcatgaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 373  Q
    ||||| ||||| ||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  3299620 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3299521  T
Q  374 acacgagcaaccacggcatcagc 396  Q
    ||||||||||||| |||||||||    
T  3299520 acacgagcaaccatggcatcagc 3299498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 396
Target Start/End: Complemental strand, 3392513 - 3392391
Alignment:
Q  277 agacaagtcatgaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 373  Q
    ||||| ||||| ||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  3392513 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3392414  T
Q  374 acacgagcaaccacggcatcagc 396  Q
    ||||||||||||| |||||||||    
T  3392413 acacgagcaaccatggcatcagc 3392391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 1163564 - 1163674
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttg 208  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||| |||||||||    |||| | || ||||| |||||    
T  1163564 gtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaatcttg 1163663  T
Q  209 gtaatcaaaat 219  Q
    |||||||||||    
T  1163664 gtaatcaaaat 1163674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 1850175 - 1850065
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttg 208  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||  || || |||||||||    |||| | || ||||| |||||    
T  1850175 gtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataactctaccattctcctctttagcaaaactaatcttg 1850076  T
Q  209 gtaatcaaaat 219  Q
    |||||||||||    
T  1850075 gtaatcaaaat 1850065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 384
Target Start/End: Original strand, 1163693 - 1163794
Alignment:
Q  283 gtcatgaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagc 381  Q
    ||||| ||||||||||| |||||||| |||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  ||||||||    
T  1163693 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 1163791  T
Q  382 aac 384  Q
    |||    
T  1163792 aac 1163794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 1850046 - 1849942
Alignment:
Q  283 gtcatgaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttccacacga 379  Q
    ||||| ||||||||||| |||||| | |||||||||| |||  ||||||||  |||||||||||||||||   | ||||||||||| ||||| |||||||    
T  1850046 gtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacga 1849947  T
Q  380 gcaac 384  Q
    |||||    
T  1849946 gcaac 1849942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 385
Target Start/End: Original strand, 40102209 - 40102315
Alignment:
Q  279 acaagtcatgaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacg 378  Q
    ||||||||| ||||| ||||| ||||||  |||| |||| || ||| |||||||| ||||| | |||  | |||||||| ||||||||||||| ||||||    
T  40102209 acaagtcataaccaaaagcatggtcaccaaatttcaaaagataacccagatgagtcttgatattaaatctcgtgtcattctttccaaaatctttcacacg 40102308  T
Q  379 agcaacc 385  Q
    |||||||    
T  40102309 agcaacc 40102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 112 - 396
Target Start/End: Original strand, 25912130 - 25912411
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 211  Q
    |||||| |||||||  ||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||  |||||||| |||||||     
T  25912130 gtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcttcggcataactaatcttggtg 25912229  T
Q  212 atcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcatgaccaagagcatagtcaccggatt 311  Q
    |||||||| |||||| |||||| |  |||| | ||||||||||   |||||||||||  ||||| ||||| ||||| ||||||||||| |||| ||| ||    
T  25912230 atcaaaatggcagcatgaaggttgttattggtgttggtgttag---ctcctccttctcctcctctagacaggtcataaccaagagcatggtcatcgggtt 25912326  T
Q  312 ttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagc 396  Q
    ||| |||| |||| ||||||||  |||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||    
T  25912327 ttagaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacatcatcagc 25912411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 349
Target Start/End: Original strand, 44444596 - 44444838
Alignment:
Q  96 tgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatc 195  Q
    ||||||||||| ||| | |||||| ||||| |||||| || |||| ||||||||||||| | ||||||| ||||||||| ||     |||| ||||||||    
T  44444596 tgaaggtgagatgagcggcttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaactatgt---cattctcttcatc 44444692  T
Q  196 ataactactcttggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttcttttcctccagacaagtcatgaccaaga 295  Q
     |||||| | ||||||||||||||||||||| ||||||||||| || | ||| ||||||||| ||||| | ||   |||  ||     |||| |||||||    
T  44444693 gtaactagtattggtaatcaaaattgcagcacgaaggtcgccaatggtgttgatgttagctcttcctcttact---cctatag-----tcataaccaaga 44444784  T
Q  296 gcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagtt 349  Q
    ||||||||||| | |||||||||| |||| |||||||| |||||||||||||||    
T  44444785 gcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University