View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1167_high_4 (Length: 369)
Name: NF1167_high_4
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1167_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 29 - 294
Target Start/End: Complemental strand, 44001916 - 44001651
Alignment:
| Q |
29 |
aattctggctgttccaagttacgactccaccaatcaccattagttagattcacatctttttacatgagtatttggttactcaccattagttagtttctac |
128 |
Q |
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| T |
44001916 |
aattctggctgttccaagttacgactccaccaatcaccattagttagattcacatctttttacatgagtatttggttactcaccattagttagtttctac |
44001817 |
T |
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| Q |
129 |
atgaaaataatcactatatttttatattcaatcaattgctcatttgatttttcttcttttgcatttaaaaattcaactttgcgttggtcctaaaatgaac |
228 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44001816 |
atgaaaataatcactatatttttatattcaattaattgctcatttgatttttcttcttttgcatttaaaaattcaactttgcgttggtcctaaaatgaac |
44001717 |
T |
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| Q |
229 |
aatcgattgaagaataaatttagagannnnnnnncttattgtaaggaccatttatatccctttgct |
294 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44001716 |
aatcgattgaagaataaatttagagatttattttcttattgtaaggaccatttatatccctttgct |
44001651 |
T |
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