View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_high_5 (Length: 332)

Name: NF1167_high_5
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_high_5
NF1167_high_5
[»] chr7 (7 HSPs)
chr7 (13-235)||(4542475-4542697)
chr7 (24-170)||(4546419-4546565)
chr7 (27-130)||(21835809-21835912)
chr7 (39-129)||(8276593-8276682)
chr7 (30-103)||(11825792-11825865)
chr7 (268-303)||(10431737-10431772)
chr7 (30-129)||(26557090-26557189)
[»] chr2 (7 HSPs)
chr2 (8-230)||(25873658-25873880)
chr2 (27-230)||(25870291-25870494)
chr2 (28-103)||(10600575-10600650)
chr2 (31-129)||(1507070-1507167)
chr2 (38-119)||(15704413-15704494)
chr2 (27-120)||(38005601-38005694)
chr2 (38-118)||(15719667-15719747)
[»] chr3 (7 HSPs)
chr3 (33-235)||(54460811-54461012)
chr3 (38-127)||(9392426-9392515)
chr3 (38-130)||(8461903-8461994)
chr3 (268-306)||(16185270-16185308)
chr3 (31-131)||(9154400-9154500)
chr3 (30-120)||(2280050-2280140)
chr3 (41-129)||(10884547-10884634)
[»] chr4 (3 HSPs)
chr4 (223-306)||(15431520-15431604)
chr4 (223-306)||(15438134-15438218)
chr4 (31-129)||(11703020-11703118)
[»] chr6 (1 HSPs)
chr6 (190-231)||(34501819-34501860)
[»] chr5 (3 HSPs)
chr5 (28-129)||(21333100-21333200)
chr5 (28-129)||(21336116-21336216)
chr5 (268-303)||(28441795-28441830)
[»] scaffold0360 (1 HSPs)
scaffold0360 (31-118)||(2077-2164)
[»] scaffold0962 (1 HSPs)
scaffold0962 (30-75)||(3702-3747)
[»] chr8 (2 HSPs)
chr8 (30-103)||(5963865-5963938)
chr8 (38-119)||(18696369-18696450)
[»] chr1 (2 HSPs)
chr1 (30-103)||(37641476-37641549)
chr1 (30-129)||(1950875-1950973)
[»] scaffold0062 (2 HSPs)
scaffold0062 (38-119)||(53325-53406)
scaffold0062 (38-118)||(68224-68304)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 4542697 - 4542475
Alignment:
Q  13 cagacctaacctctagaaaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctc 112  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4542697 cagacctaacctctagaaaattaactagacataatcaaataaaaaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacggtgctc 4542598  T
Q  113 ctcaattttctttcaattcccgttgttgcttcctgtagtgatatgcttgttcccgtttttcttctccaacaagtgacaaacgtgattcttgccgtaaccg 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4542597 ctcaattttctttcaattcccgttgttgcttcctgcagtgatatgcttgttcccgtttttcttctccaacaagtgccaaacgtgattcttgccgtaaccg 4542498  T
Q  213 tgatgtcaccagcgtgaataatt 235  Q
    |||||||||||||||||||||||    
T  4542497 tgatgtcaccagcgtgaataatt 4542475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 4546565 - 4546419
Alignment:
Q  24 tctagaaaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttct 123  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4546565 tctagaaaatttgctagacataatcaaataaaaaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacggtgctcctcaattttct 4546466  T
Q  124 ttcaattcccgttgttgcttcctgtagtgatatgcttgttcccgttt 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4546465 ttcaattcccgttgttgcttcctgtagtgatatgcttgttcccgttt 4546419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 21835809 - 21835912
Alignment:
Q  27 agaaaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttc 126  Q
    |||||| ||| ||||||| ||||||||| ||||||||||| |||||||| |||||||||||| |   | |||| ||| |  |||||||||||||||||||    
T  21835809 agaaaactagatagacatgatcaaataagcaaacaacatagagaagaaaataaaccgataaaatgtcgccgttaccggcagtgctcctcaattttctttc 21835908  T
Q  127 aatt 130  Q
    ||||    
T  21835909 aatt 21835912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 8276682 - 8276593
Alignment:
Q  39 agacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttcaat 129  Q
    |||||| || ||| ||| |||||||||||  |||||| ||||| |||| ||||| |||||||||| |  ||||||||||||||||||||||    
T  8276682 agacatgataaaagaaataaacaacataataaagaaaataaactgatagagttccgtcgttgccggc-ttgctcctcaattttctttcaat 8276593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 11825792 - 11825865
Alignment:
Q  30 aaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccg 103  Q
    ||||||| ||||||| ||||||  || |||||||||||  |||||| |||||||||| ||||| ||||||||||    
T  11825792 aaattagctagacatgatcaaacgaataaacaacataataaagaaaataaaccgatagagttccgtcgttgccg 11825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Complemental strand, 10431772 - 10431737
Alignment:
Q  268 ttgtaacctagtttcttcctttctccccaagcatgt 303  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10431772 ttgtaacctagtttctttctttctccccaagcatgt 10431737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 26557189 - 26557090
Alignment:
Q  30 aaattagttagacataatcaaataaacaaacaacataa-agaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttcaa 128  Q
    ||||||| ||||||| || ||| ||| ||||||||||| | || ||| ||||| |||| ||||| |||||||||| |  ||||||| |||||||||||||    
T  26557189 aaattagctagacatgataaaagaaataaacaacataataaaaaaaaataaactgatagagttccgtcgttgccggct-tgctcctgaattttctttcaa 26557091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 25873880 - 25873658
Alignment:
Q  8 caccacagacctaacctctagaaaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacga 107  Q
    |||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25873880 cacctcagacctaacatctaggaaattagctagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgg 25873781  T
Q  108 tgctcctcaattttctttcaattcccgttgttgcttcctgtagtgatatgcttgttcccgtttttcttctccaacaagtgacaaacgtgattcttgccgt 207  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||    
T  25873780 tgctcctcaattttctttcaattcccgttgttgcttcctgcagtgatatgcttgttccggtttttcttctccaacaagtgccaaaggtgattcttgtcgt 25873681  T
Q  208 aaccgtgatgtcaccagcgtgaa 230  Q
    ||||||||||||||| |||||||    
T  25873680 aaccgtgatgtcaccggcgtgaa 25873658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 25870494 - 25870291
Alignment:
Q  27 agaaaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttc 126  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  25870494 agaaaattagctagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcggtcgttgccgacggtgctcctcaattttctttc 25870395  T
Q  127 aattcccgttgttgcttcctgtagtgatatgcttgttcccgtttttcttctccaacaagtgacaaacgtgattcttgccgtaaccgtgatgtcaccagcg 226  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  25870394 aattcccgttgttgcttcctgtagtgatatgcttgttccggtttttcttctccaacaagtgccaaaggtgattcttgtcgtaaccgtgatgtcaccagcg 25870295  T
Q  227 tgaa 230  Q
    ||||    
T  25870294 tgaa 25870291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 10600650 - 10600575
Alignment:
Q  28 gaaaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccg 103  Q
    ||||||||| ||||||| || |||  ||||||||| |||   |||||| |||||||||||||||| ||||||||||    
T  10600650 gaaaattagctagacatgattaaaataacaaacaatatagtaaagaaaataaaccgataaagttccgtcgttgccg 10600575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 1507070 - 1507167
Alignment:
Q  31 aattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttcaat 129  Q
    |||||| ||||||| || ||||||| ||||||||||   |||||| |||||||||| ||||  |||| || || || ||||||||||| ||||||||||    
T  1507070 aattagctagacatgattaaataaataaacaacatagt-aagaaaataaaccgatagagtttcgtcgatgtcggcgttgctcctcaatcttctttcaat 1507167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 15704413 - 15704494
Alignment:
Q  38 tagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaatt 119  Q
    ||||||| |||||||||| ||||||||||   |||||| |||||||||| ||||  |||||||  |||  ||||||||||||    
T  15704413 tagacatgatcaaataaataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaatt 15704494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 38005601 - 38005694
Alignment:
Q  27 agaaaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattt 120  Q
    |||||||||| |||||||| | |||  || ||||||||||   |||||| |||||||||| ||||| |||||||||| |  | |||||||||||    
T  38005601 agaaaattagctagacatagttaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaattt 38005694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 15719667 - 15719747
Alignment:
Q  38 tagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaat 118  Q
    ||||||| |||||||||| ||||||||||   |||||| |||||||||| ||||  |||||||  |||  |||||||||||    
T  15719667 tagacatgatcaaataaataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaat 15719747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 54461012 - 54460811
Alignment:
Q  33 ttagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttcaattcc 132  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| ||||  ||||||||||||||||||||||| |    
T  54461012 ttagctagacataatcaaataagcaaacaacataaagaagaaattaaaccaataaagtttagtcgttgtcgacagtgctcctcaattttctttcaattgc 54460913  T
Q  133 cgttgttgcttcctgtagtgatatgcttgttcccgtttttcttctccaacaagtgacaaacgtgattcttgccgtaaccgtgatgtcaccagcgtgaata 232  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  54460912 cgttgttgcttcct-tagtgatatgcttgttcccgtttttcttctccaacaagtgccaaacgtgattcttgccgtaaccgtgatgtcaccatcttgaata 54460814  T
Q  233 att 235  Q
    |||    
T  54460813 att 54460811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 9392515 - 9392426
Alignment:
Q  38 tagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttca 127  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||| | ||| ||||||||||||| ||||||||||||||||||||    
T  9392515 tagacatgatcaaataagcaaacaacataaagaagaaaataaaccgatagaattccgtcgttgccgacggtgctcctcaattttctttca 9392426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 8461903 - 8461994
Alignment:
Q  38 tagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttcaatt 130  Q
    ||||||| ||||||||| |||| |||||||| |||||| |||| ||||| | |||||| ||||| |||| ||| |||||||||||||||||||    
T  8461903 tagacatgatcaaataagcaaataacataaa-aagaaaataaatcgatagaattcagtagttgctgacggtgcacctcaattttctttcaatt 8461994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 16185270 - 16185308
Alignment:
Q  268 ttgtaacctagtttcttcctttctccccaagcatgtcac 306  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  16185270 ttgtaacctagtttctttctttctccccaagcatgtcac 16185308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 9154500 - 9154400
Alignment:
Q  31 aattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttcaatt 130  Q
    |||||| ||||||| || ||||| | ||||||||||   || ||| ||||| |||||||||| |||| || ||||| ||||||||||| ||||| |||||    
T  9154500 aattagctagacatgattaaatacataaacaacatagtaaaaaaaataaacagataaagttccgtcgatgtcgacgttgctcctcaatcttcttccaatt 9154401  T
Q  131 c 131  Q
    |    
T  9154400 c 9154400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 2280050 - 2280140
Alignment:
Q  30 aaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattt 120  Q
    ||||||| ||||||| |  ||| |||||||||||||    |||||| |||||||||| | ||| |||||||||| || |||||||||||||    
T  2280050 aaattagctagacatgaataaagaaacaaacaacattgtaaagaaaataaaccgatagaattccgtcgttgccggcgttgctcctcaattt 2280140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 10884634 - 10884547
Alignment:
Q  41 acataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttcaat 129  Q
    ||||||||||| ||  ||||||||||   |||||| |||||| ||||||||| |||||||||| |   |||||| ||||||||||||||    
T  10884634 acataatcaaagaattaaacaacatagtaaagaaaataaaccaataaagttccgtcgttgccggcttagctcct-aattttctttcaat 10884547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 15431604 - 15431520
Alignment:
Q  223 agcgtgaataattcttgtgctgtaacatcaatgtc-ttttatagccttgtaacctagtttcttcctttctccccaagcatgtcac 306  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15431604 agcgtgaataaatcttgtgctgtaacatcaatgtccttttatagccttgtaacctagtttcttcctttctccccaagcatgtcac 15431520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 15438218 - 15438134
Alignment:
Q  223 agcgtgaataattcttgtgctgtaacatcaatgtc-ttttatagccttgtaacctagtttcttcctttctccccaagcatgtcac 306  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15438218 agcgtgaataaatcttgtgctgtaacatcaatgtccttttatagccttgtaacctagtttcttcctttctccccaagcatgtcac 15438134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 11703020 - 11703118
Alignment:
Q  31 aattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttcaat 129  Q
    |||||| ||||||| || ||||||| ||||||||||   |||||| |||||||||| | ||  |||| || || || ||||||||||| ||||||||||    
T  11703020 aattagctagacatgattaaataaataaacaacatagtaaagaaaataaaccgatagaatttcgtcgatgtcggcgttgctcctcaatcttctttcaat 11703118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 34501860 - 34501819
Alignment:
Q  190 aaacgtgattcttgccgtaaccgtgatgtcaccagcgtgaat 231  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  34501860 aaacgtgatccttgccgtaaccgtgatgtcaccagcgtgaat 34501819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 21333100 - 21333200
Alignment:
Q  28 gaaaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttca 127  Q
    ||||||||| |||||||||| |||  || ||||||||||   |||||| |||||||||| ||||| |||| ||||| |  ||||||||||||||||||||    
T  21333100 gaaaattagctagacataataaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgctgccggct-tgctcctcaattttctttca 21333198  T
Q  128 at 129  Q
    ||    
T  21333199 at 21333200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 21336116 - 21336216
Alignment:
Q  28 gaaaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttca 127  Q
    ||||||||| |||||||||| |||  || ||||||||||   |||||| |||||||||| ||||| |||| ||||| |  ||||||||||||||||||||    
T  21336116 gaaaattagctagacataataaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgctgccggct-tgctcctcaattttctttca 21336214  T
Q  128 at 129  Q
    ||    
T  21336215 at 21336216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 28441795 - 28441830
Alignment:
Q  268 ttgtaacctagtttcttcctttctccccaagcatgt 303  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28441795 ttgtaacctagtttctttctttctccccaagcatgt 28441830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 2164 - 2077
Alignment:
Q  31 aattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaat 118  Q
    |||||| ||||||| |  ||| |||||||||||||||  |||||| |||||||||| ||||| ||||||||||| | ||||| |||||    
T  2164 aattagctagacatcaataaagaaacaaacaacataataaagaaaataaaccgatagagttccgtcgttgccgatgttgctcttcaat 2077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0962 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 3702 - 3747
Alignment:
Q  30 aaattagttagacataatcaaataaacaaacaacataaagaagaaa 75  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  3702 aaattagctagacatgatcaaataagcaaacaacataaagaagaaa 3747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 5963938 - 5963865
Alignment:
Q  30 aaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccg 103  Q
    ||||||| ||||||| ||||||  || |||||||||||  |||||| |||||||||| ||||| ||||||||||    
T  5963938 aaattagctagacatgatcaaacgaataaacaacataataaagaaaataaaccgatagagttccgtcgttgccg 5963865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 18696369 - 18696450
Alignment:
Q  38 tagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaatt 119  Q
    ||||||| |||||||||| ||||||||||   |||||| |||||||||| ||||  |||||||  |||  ||||||||||||    
T  18696369 tagacatgatcaaataaataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaatt 18696450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 37641549 - 37641476
Alignment:
Q  30 aaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccg 103  Q
    ||||||| ||||||| ||||||  || |||||||||||  |||||| |||||||||| ||||| ||||||||||    
T  37641549 aaattagctagacatgatcaaacgaataaacaacataataaagaaaataaaccgatagagttctgtcgttgccg 37641476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 1950875 - 1950973
Alignment:
Q  30 aaattagttagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaattttctttcaat 129  Q
    ||||||| |||||||||||||| ||  ||||||||||   |||||| |||||| ||| ||||| |||||||||| |   |||||| ||||||||||||||    
T  1950875 aaattagctagacataatcaaagaattaaacaacatagtaaagaaaataaaccaatagagttccgtcgttgccggcttagctcct-aattttctttcaat 1950973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 53325 - 53406
Alignment:
Q  38 tagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaatt 119  Q
    ||||||| |||||||||| ||||||||||   |||||| |||||||||| ||||  |||||||  |||  ||||||||||||    
T  53325 tagacatgatcaaataaataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaatt 53406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 68224 - 68304
Alignment:
Q  38 tagacataatcaaataaacaaacaacataaagaagaaattaaaccgataaagttcagtcgttgccgacgatgctcctcaat 118  Q
    ||||||| |||||||||| ||||||||||   |||||| |||||||||| ||||  |||||||  |||  |||||||||||    
T  68224 tagacatgatcaaataaataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaat 68304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University