View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_low_1 (Length: 701)

Name: NF1167_low_1
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_low_1
NF1167_low_1
[»] chr1 (15 HSPs)
chr1 (30-426)||(573972-574365)
chr1 (452-601)||(33659860-33660013)
chr1 (450-601)||(28283758-28283913)
chr1 (452-541)||(26244444-26244533)
chr1 (456-574)||(37335008-37335126)
chr1 (452-550)||(50616003-50616102)
chr1 (452-550)||(50623831-50623930)
chr1 (453-513)||(4426247-4426307)
chr1 (452-528)||(10891688-10891764)
chr1 (489-584)||(50615097-50615190)
chr1 (489-584)||(50622925-50623018)
chr1 (480-554)||(28284552-28284627)
chr1 (452-510)||(47213884-47213942)
chr1 (313-351)||(47683501-47683539)
chr1 (454-510)||(45813229-45813284)
[»] chr6 (5 HSPs)
chr6 (171-451)||(2471646-2471925)
chr6 (452-572)||(6608385-6608505)
chr6 (455-513)||(6606653-6606711)
chr6 (452-513)||(6607605-6607666)
chr6 (452-510)||(29429500-29429558)
[»] chr5 (10 HSPs)
chr5 (171-451)||(8980981-8981260)
chr5 (455-601)||(38943090-38943240)
chr5 (452-584)||(19033580-19033712)
chr5 (489-584)||(37922737-37922832)
chr5 (451-572)||(19033103-19033225)
chr5 (452-572)||(37923425-37923546)
chr5 (457-572)||(2332263-2332379)
chr5 (452-572)||(38943594-38943719)
chr5 (452-513)||(2331443-2331504)
chr5 (452-510)||(10361047-10361105)
[»] chr4 (14 HSPs)
chr4 (171-451)||(27134844-27135124)
chr4 (452-584)||(29893837-29893969)
chr4 (452-601)||(33394914-33395067)
chr4 (452-601)||(50646530-50646683)
chr4 (452-584)||(48542310-48542442)
chr4 (452-572)||(33394459-33394580)
chr4 (454-584)||(44087987-44088117)
chr4 (457-572)||(40260572-40260688)
chr4 (452-572)||(29893343-29893464)
chr4 (452-572)||(50646058-50646177)
chr4 (452-554)||(48541396-48541499)
chr4 (278-368)||(11322347-11322437)
chr4 (501-555)||(43323536-43323590)
chr4 (454-513)||(43326037-43326096)
[»] chr3 (19 HSPs)
chr3 (467-601)||(13648427-13648561)
chr3 (452-584)||(10030479-10030611)
chr3 (452-601)||(51800951-51801105)
chr3 (452-601)||(27042985-27043137)
chr3 (452-601)||(46416033-46416186)
chr3 (30-140)||(49245176-49245285)
chr3 (452-572)||(10029994-10030115)
chr3 (452-572)||(10257717-10257838)
chr3 (477-601)||(38507781-38507909)
chr3 (452-572)||(10181347-10181468)
chr3 (452-572)||(10124915-10125036)
chr3 (452-572)||(51801429-51801550)
chr3 (451-512)||(13647689-13647750)
chr3 (459-572)||(33464155-33464269)
chr3 (451-553)||(38506981-38507084)
chr3 (454-513)||(27043912-27043971)
chr3 (455-513)||(33464956-33465014)
chr3 (456-510)||(34266839-34266893)
chr3 (454-510)||(46961671-46961727)
[»] chr8 (6 HSPs)
chr8 (452-584)||(43139149-43139281)
chr8 (452-584)||(21570910-21571042)
chr8 (452-572)||(21570416-21570537)
chr8 (452-510)||(42840446-42840504)
chr8 (450-510)||(45376207-45376267)
chr8 (231-278)||(23268249-23268296)
[»] chr7 (6 HSPs)
chr7 (452-584)||(7475025-7475157)
chr7 (455-601)||(28870317-28870467)
chr7 (451-601)||(47514338-47514484)
chr7 (452-572)||(28869836-28869961)
chr7 (452-572)||(47513543-47513664)
chr7 (452-513)||(44185801-44185862)
[»] chr2 (7 HSPs)
chr2 (451-601)||(38825873-38826027)
chr2 (458-584)||(40133670-40133796)
chr2 (451-572)||(1156131-1156253)
chr2 (452-526)||(1156930-1157004)
chr2 (452-526)||(2283628-2283702)
chr2 (489-572)||(2285557-2285641)
chr2 (452-513)||(40129171-40129232)
[»] scaffold0022 (1 HSPs)
scaffold0022 (452-584)||(60341-60473)
[»] scaffold0072 (2 HSPs)
scaffold0072 (452-572)||(16237-16357)
scaffold0072 (450-513)||(17041-17104)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 30 - 426
Target Start/End: Complemental strand, 574365 - 573972
Alignment:
Q  30 tttataacttgtcttcaacctacctagtccctaccatcttcctctttttcagatcctgaatttttgttcagctaccttggtttcttagtgtttttcccaa 129  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  574365 tttataacttgtcttcaacctacctagtccctaccatctccctctttttcagatcctgaatttttgtttagctaccttggtttcttagtgtttttcccat 574266  T
Q  130 tcattgctcatnnnnnnnnnnnnnttgtattatatttataccaaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaact 229  Q
     ||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  574265 ccattgctcataaaaaaaaa----ttgtattatatttataccaaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaact 574170  T
Q  230 catctttcatgacagcagaattgtaacaatttcatttatgctttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaatat 329  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  574169 catctttcatgacagcagaattgtaacaatttcatttatgcttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaatat 574070  T
Q  330 agtgagctaatgatggtggtttat-aagatgcctagtaacaccagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctc 426  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  574069 agtgagctaatgatggtggtttataaagatgcctagtaacagtagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctc 573972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 452 - 601
Target Start/End: Complemental strand, 33660013 - 33659860
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||    
T  33660013 ggcgagttttagcatggggcaattgtgaaattgcccaatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaattt 33659914  T
Q  552 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 601  Q
    ||||||||| ||||||||||||||| |||    |||||||||||||||||||||    
T  33659913 ataaccctactcaattataatttgattcaaattaatttacttgtaaatacatta 33659860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 450 - 601
Target Start/End: Original strand, 28283758 - 28283913
Alignment:
Q  450 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaat 549  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||    
T  28283758 agggcgagttttagcatggggcaattgtgaaattgtcccatcttagatcaattttattttatttgttgttacatgtacatcctgcattttatattccaat 28283857  T
Q  550 ttataaccctattcaattataatttgactca----aatttacttgtaaatacatta 601  Q
    ||||| | ||| ||||||||||||||| |||    |||||||||||||||||||||    
T  28283858 ttatagctctactcaattataatttgattcaaattaatttacttgtaaatacatta 28283913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 452 - 541
Target Start/End: Complemental strand, 26244533 - 26244444
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttat 541  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  26244533 ggcgagttttagcatggggtaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttat 26244444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 456 - 574
Target Start/End: Complemental strand, 37335126 - 37335008
Alignment:
Q  456 agttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataa 555  Q
    ||||| |||||||||||||| | ||||| | | ||||||||||||||||||||||||| ||  ||||| |||||| |||||||||||||  ||||||||     
T  37335126 agtttcagcatggggcaattctcaaattgctccatcttagatcaattttgttttatttgctactacatatacatcatgcattttatattctaatttatag 37335027  T
Q  556 ccctattcaattataattt 574  Q
    |||||||||||||||||||    
T  37335026 ccctattcaattataattt 37335008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 452 - 550
Target Start/End: Complemental strand, 50616102 - 50616003
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||  | |||  |||||| | |||| |||||||||||||||    
T  50616102 ggcgagttttagtatggggcaattgtcaaattgccccatcttagatcaattttgttttatttggtattagctgtacaccttgcatttttatatttcaatt 50616003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 452 - 550
Target Start/End: Complemental strand, 50623930 - 50623831
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||  | |||  |||||| | |||| |||||||||||||||    
T  50623930 ggcgagttttagtatggggcaattgtcaaattgccccatcttagatcaattttgttttatttggtattagctgtacaccttgcatttttatatttcaatt 50623831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 453 - 513
Target Start/End: Original strand, 4426247 - 4426307
Alignment:
Q  453 gcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    |||||||||||||| |||||||||  ||||||| | |||||||||||||||||||||||||    
T  4426247 gcgagttttagcatagggcaattgacaaattactccatcttagatcaattttgttttattt 4426307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 528
Target Start/End: Complemental strand, 10891764 - 10891688
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtaca 528  Q
    |||| |||||||||||||||||| |  ||||| ||| |||||||||||||||||| |||| || | |||| ||||||    
T  10891764 ggcgggttttagcatggggcaatggaaaaatttccccatcttagatcaattttgtcttatctattattacttgtaca 10891688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 584
Target Start/End: Original strand, 50615097 - 50615190
Alignment:
Q  489 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 584  Q
    |||||| ||||| |||||||||||| ||  |||||||||| | | |||||||||||  |||||| |   ||| |||||||||||||||||||||||    
T  50615097 atcttatatcaactttgttttatttgctactacatgtacaccttacattttatattctaatttaga--gctactcaattataatttgactcaaatt 50615190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 584
Target Start/End: Original strand, 50622925 - 50623018
Alignment:
Q  489 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 584  Q
    |||||| ||||| |||||||||||| ||  |||||||||| | | |||||||||||  |||||| |   ||| |||||||||||||||||||||||    
T  50622925 atcttatatcaactttgttttatttgctactacatgtacaccttacattttatattctaatttaga--gctactcaattataatttgactcaaatt 50623018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 554
Target Start/End: Complemental strand, 28284627 - 28284552
Alignment:
Q  480 aattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttata 554  Q
    |||| ||| ||||||||||||||||||||||||| || |||  ||| || | |||| |||||||||||||||||||    
T  28284627 aattgccccatcttagatcaattttgttttatttgctattagctgtccaccttgcatttttatatttcaatttata 28284552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 510
Target Start/End: Original strand, 47213884 - 47213942
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 510  Q
    ||||||||||||||||||  |||||| ||||| | | |||||| |||||||||||||||    
T  47213884 ggcgagttttagcatgggtaaattgtcaaatttctccatcttatatcaattttgtttta 47213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 47683501 - 47683539
Alignment:
Q  313 tcacatgcttgcaatatagtgagctaatgatggtggttt 351  Q
    |||||||||||| || |||||||||||||||||||||||    
T  47683501 tcacatgcttgcgatgtagtgagctaatgatggtggttt 47683539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 510
Target Start/End: Complemental strand, 45813284 - 45813229
Alignment:
Q  454 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 510  Q
    ||||||||||||||||  |||||| |||||  || ||||||||||||||||||||||    
T  45813284 cgagttttagcatgggtaaattgtcaaattttcc-atcttagatcaattttgtttta 45813229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 220; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 171 - 451
Target Start/End: Complemental strand, 2471925 - 2471646
Alignment:
Q  171 caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatgc 270  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  2471925 caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgc 2471827  T
Q  271 tttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacac 370  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2471826 ttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacag 2471727  T
Q  371 cagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctcnnnnnnngcctgttctgtttatgag 451  Q
     ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||       ||||||||||||||||||    
T  2471726 tagtagcaaagagacagaagcggtggccttgtcttttttgaggcataggtggtctctttttttgcctgttctgtttatgag 2471646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 452 - 572
Target Start/End: Complemental strand, 6608505 - 6608385
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||| ||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| || |||  |||||||||| ||||||||||| ||||||    
T  6608505 ggcgggttttagcatgggacaattgttaaattgccccatcttagatcaattttgttttatttgctattagttgtacatcctacattttatattccaattt 6608406  T
Q  552 ataaccctattcaattataat 572  Q
    ||| | ||||| |||||||||    
T  6608405 atagctctatttaattataat 6608385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 6606653 - 6606711
Alignment:
Q  455 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  6606653 gagttttagcatggggcaattgtgaaattgccccaacttagatcaattttgttttattt 6606711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 452 - 513
Target Start/End: Original strand, 6607605 - 6607666
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  6607605 ggcgagttttagcatggggcaattgtgaaattgccccaacttagatcaattttattttattt 6607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 510
Target Start/End: Complemental strand, 29429558 - 29429500
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 510  Q
    |||||||||||||||| |  |||||| ||||| ||| ||||||||||||||||||||||    
T  29429558 ggcgagttttagcatgagcaaattgtcaaatttccccatcttagatcaattttgtttta 29429500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 220; Significance: 1e-120; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 171 - 451
Target Start/End: Original strand, 8980981 - 8981260
Alignment:
Q  171 caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatgc 270  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  8980981 caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgc 8981079  T
Q  271 tttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacac 370  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8981080 ttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacag 8981179  T
Q  371 cagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctcnnnnnnngcctgttctgtttatgag 451  Q
     ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||       ||||||||||||||||||    
T  8981180 tagtagcaaagagacagaagcggtggccttgtcttttttgaggcataggtggtctctttttttgcctgttctgtttatgag 8981260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 455 - 601
Target Start/End: Original strand, 38943090 - 38943240
Alignment:
Q  455 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttata 554  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  38943090 gagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaatttata 38943189  T
Q  555 accctattcaattataatttgactca----aatttacttgtaaatacatta 601  Q
       ||| |||||||||||||||||||    |||||||||||||||||||||    
T  38943190 gttctactcaattataatttgactcaaattaatttacttgtaaatacatta 38943240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 452 - 584
Target Start/End: Complemental strand, 19033712 - 19033580
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||    
T  19033712 ggcgagttttagcatggagcaattgtgaaattgtcccatcttagatcaattttattttatttgctgttacatgtacaccctacattttatatttcaattt 19033613  T
Q  552 ataaccctattcaattataatttgactcaaatt 584  Q
    |||| |||| |||||||||||||||||||||||    
T  19033612 ataatcctactcaattataatttgactcaaatt 19033580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 489 - 584
Target Start/End: Original strand, 37922737 - 37922832
Alignment:
Q  489 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 584  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||||    
T  37922737 atcttagatcaattttgttttatttgctgttatatgtacaccctgcattttatatttcaatttatagtcctactcaattataatttgactcaaatt 37922832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 451 - 572
Target Start/End: Original strand, 19033103 - 19033225
Alignment:
Q  451 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaat 549  Q
    ||||||||||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||| || |||  ||||||||||| | |||||||||| |||    
T  19033103 gggcgagttttagcaaggggcaattgtcaaactgccccatcttagatcaattttgttttatttgctattagttgtacatcctgtatttttatattttaat 19033202  T
Q  550 ttataaccctattcaattataat 572  Q
    |||||  | |||||| |||||||    
T  19033203 ttatagtcatattcatttataat 19033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 572
Target Start/End: Complemental strand, 37923546 - 37923425
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||| || ||| || ||||||||| |||||    
T  37923546 ggcgagttttagcatggggcaattgtcaaatttccccatcttagatcaattttgttttatttgctattagttgtccaccctacatttttatattccaatt 37923447  T
Q  551 tataaccctattcaattataat 572  Q
    |||| || |||| | |||||||    
T  37923446 tatagccatatttacttataat 37923425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 457 - 572
Target Start/End: Complemental strand, 2332379 - 2332263
Alignment:
Q  457 gttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgc-attttatatttcaatttataa 555  Q
    ||||||||||||||||||||| ||||| | | |||||| |||||||||||||||||| || |||  |||||||||| | |||||||||| |||||||||     
T  2332379 gttttagcatggggcaattgttaaattgctccatcttaaatcaattttgttttatttgctattagttgtacatcctacaattttatattccaatttatag 2332280  T
Q  556 ccctattcaattataat 572  Q
    | ||||| |||||||||    
T  2332279 ctctatttaattataat 2332263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 452 - 572
Target Start/End: Complemental strand, 38943719 - 38943594
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttact----gttacatgtacatcctgca-ttttatatttc 546  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||     |||  |||||||| |||| ||||||||| |    
T  38943719 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattaattaattgtacatcttgcatttttatattcc 38943620  T
Q  547 aatttataaccctattcaattataat 572  Q
    |||||||| || |||||| |||||||    
T  38943619 aatttatagccatattcatttataat 38943594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 452 - 513
Target Start/End: Original strand, 2331443 - 2331504
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  2331443 ggcgagttttagcatggggcaattgtgaaattgccccaacttagatcaattttattttattt 2331504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 510
Target Start/End: Complemental strand, 10361105 - 10361047
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 510  Q
    ||||||||||||||||||  |||||| |||||  || ||||||||||||||||||||||    
T  10361105 ggcgagttttagcatgggcaaattgtcaaattttcccatcttagatcaattttgtttta 10361047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 171 - 451
Target Start/End: Complemental strand, 27135124 - 27134844
Alignment:
Q  171 caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatgc 270  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  27135124 caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgc 27135026  T
Q  271 tttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacac 370  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27135025 ttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacag 27134926  T
Q  371 cagtagcaaagagacagaagcggtggccttatc-ttttttgaggcacaggtggtctcnnnnnnngcctgttctgtttatgag 451  Q
     ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||       ||||||||||||||||||    
T  27134925 tagtagcaaagagacagaagcggtggccttgtctttttttgaggcataggtggtctctttttttgcctgttctgtttatgag 27134844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 452 - 584
Target Start/End: Complemental strand, 29893969 - 29893837
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||    
T  29893969 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttattttatttgctgttacatttacatcctgcattttatatttcaattt 29893870  T
Q  552 ataaccctattcaattataatttgactcaaatt 584  Q
    ||| || ||||||||||||||||||||||||||    
T  29893869 atagccttattcaattataatttgactcaaatt 29893837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 452 - 601
Target Start/End: Complemental strand, 33395067 - 33394914
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||||    
T  33395067 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattctaattt 33394968  T
Q  552 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 601  Q
    ||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
T  33394967 atagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 33394914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 452 - 601
Target Start/End: Complemental strand, 50646683 - 50646530
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||||||| |||| ||||||||||  |||||    
T  50646683 ggcgagttttagcatggggcaattgtgaaattgctccatcttaaatcaattttgttttatttgctgttacatgtacaccctgtattttatattctaattt 50646584  T
Q  552 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 601  Q
    |||  |||| |||||||||||||||||||    |||||||||||||||||||||    
T  50646583 atagtcctactcaattataatttgactcaaattaatttacttgtaaatacatta 50646530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 452 - 584
Target Start/End: Complemental strand, 48542442 - 48542310
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||||||||||||||| | | | |||||||||||||||| |||||||| || ||| ||||||| ||||||||||||||| ||||||    
T  48542442 ggcgagttttagcatggggcaattgtgaaactgctccatcttagatcaattttattttatttgctattatatgtacaccctgcattttatattccaattt 48542343  T
Q  552 ataaccctattcaattataatttgactcaaatt 584  Q
    ||| ||||| ||||||||||||||| |||||||    
T  48542342 atagccctactcaattataatttgattcaaatt 48542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 33394459 - 33394580
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||||||||||||| ||||||||| |||||    
T  33394459 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttgtacatcctgcatttttatattccaatt 33394558  T
Q  551 tataaccctattcaattataat 572  Q
    |||| || |||||| |||||||    
T  33394559 tatagccatattcatttataat 33394580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 454 - 584
Target Start/End: Complemental strand, 44088117 - 44087987
Alignment:
Q  454 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttat 553  Q
    ||||||||| |||||||||||||| ||||| |   |||||||| ||||||||||||||||  |  |||||||||| |||||||||||||||  |||||||    
T  44088117 cgagttttaacatggggcaattgtcaaattgcttcatcttagaacaattttgttttatttgttactacatgtacaccctgcattttatattctaatttat 44088018  T
Q  554 aaccctattcaattataatttgactcaaatt 584  Q
    | ||||| |||||||||||||||||||||||    
T  44088017 agccctactcaattataatttgactcaaatt 44087987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 457 - 572
Target Start/End: Original strand, 40260572 - 40260688
Alignment:
Q  457 gttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttataa 555  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||  ||| || ||| || ||||||||| |||||||||     
T  40260572 gttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttactattagttgtccaccctacatttttatattccaatttatag 40260671  T
Q  556 ccctattcaattataat 572  Q
    || |||| | |||||||    
T  40260672 ccatatttatttataat 40260688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 29893343 - 29893464
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||| ||||| ||||||| ||||| | | |||||||||||||||||||||||||  | |||  ||||||||||||| ||||||||| |||||    
T  29893343 ggcgagttttagtatgggacaattgtcaaattgctccatcttagatcaattttgttttatttgttattaattgtacatcctgcatttttatattccaatt 29893442  T
Q  551 tataaccctattcaattataat 572  Q
    |||| || |||||| |||||||    
T  29893443 tatagccatattcatttataat 29893464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 50646058 - 50646177
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||| |||||  |||||||||||||| |||  ||||||||||| | |||||||||||||||    
T  50646058 ggcgagttttagcatggagcaattgtcaaattgccccatcttaaatcaa--ttgttttatttactattaattgtacatcctgtatttttatatttcaatt 50646155  T
Q  551 tataaccctattcaattataat 572  Q
    ||||  | |||||| |||||||    
T  50646156 tatagtcatattcatttataat 50646177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 452 - 554
Target Start/End: Original strand, 48541396 - 48541499
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    ||||||||||||||||||  |||||| ||||| | | || ||||||||||||||||||||||| | |||  ||| || | |||| |||||||||| ||||    
T  48541396 ggcgagttttagcatgggttaattgtcaaattgctccatattagatcaattttgttttatttattattagttgtccaccttgcatttttatattttaatt 48541495  T
Q  551 tata 554  Q
    ||||    
T  48541496 tata 48541499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 11322437 - 11322347
Alignment:
Q  278 gctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaac 368  Q
    |||| ||| |||| ||||||||||| |||||||| | | ||||||||||| ||||  |||| ||| ||||||||||||| || ||||||||    
T  11322437 gctatatctaactagattaaactaataatatatgatgatatgcttgcaatgtagtatgctagtgacggtggtttataaggtgactagtaac 11322347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 501 - 555
Target Start/End: Original strand, 43323536 - 43323590
Alignment:
Q  501 ttttgttttatttactgttacatgtacatcctgcattttatatttcaatttataa 555  Q
    ||||||||||||| || |||||| |||| |||||||||||||||||||| |||||    
T  43323536 ttttgttttatttgctattacatttacaccctgcattttatatttcaatctataa 43323590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 43326096 - 43326037
Alignment:
Q  454 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    |||||||||||||||| ||||||| ||| |  || |||||| ||||||||||||||||||    
T  43326096 cgagttttagcatgggacaattgtcaaactgtcccatcttaaatcaattttgttttattt 43326037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 467 - 601
Target Start/End: Complemental strand, 13648561 - 13648427
Alignment:
Q  467 ggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaat 566  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || || | |||    
T  13648561 ggggcaattgtgaaattgccccatcttagatcaattttgttttatttcctgttacatgtacaccctgcattttatatttcaatttatagccgtacttaat 13648462  T
Q  567 tataatttgactcaaatttacttgtaaatacatta 601  Q
    |||||||||||||||||||||||||| ||||||||    
T  13648461 tataatttgactcaaatttacttgtatatacatta 13648427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 452 - 584
Target Start/End: Complemental strand, 10030611 - 10030479
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||||    
T  10030611 ggcgagttttagcatgggacaattgtgaaattgccccatcttagatcaattttgttttatttgatgttacatgtacaccctgcattttatattctaattt 10030512  T
Q  552 ataaccctattcaattataatttgactcaaatt 584  Q
    ||| ||||| |||||||||||||||||||||||    
T  10030511 atagccctactcaattataatttgactcaaatt 10030479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 452 - 601
Target Start/End: Original strand, 51800951 - 51801105
Alignment:
Q  452 ggcgagttttagcatggggcaa-ttgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 550  Q
    |||||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  51800951 ggcgagttttagcatgaggcaaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatatttcaatt 51801050  T
Q  551 tataaccctattcaattataatttgactcaaatt----tacttgtaaatacatta 601  Q
    |||| || |||| |||||||||||||||||||||    ||||||| |||||||||    
T  51801051 tatagccttatttaattataatttgactcaaattaatttacttgttaatacatta 51801105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 452 - 601
Target Start/End: Original strand, 27042985 - 27043137
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  27042985 ggcgagttttagcatggggcaattgtgaaattgctccatcttaaatcaattttgttttatttgctgttacatgtacatcctgcattttatactccaattt 27043084  T
Q  552 ataaccctattcaattataatttgactcaaatt----tacttgtaaatacatta 601  Q
    ||| ||||| |||||| ||||||||||||||||    ||||| |||||||||||    
T  27043085 atagccctactcaatt-taatttgactcaaattaatttacttataaatacatta 27043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 452 - 601
Target Start/End: Original strand, 46416033 - 46416186
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    ||||||||||||||||||||||||    |||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  46416033 ggcgagttttagcatggggcaatttcacaattgccccatcttaaatcaattttgttttatttgctgttacatgtacatcctgcattttatattccaattt 46416132  T
Q  552 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 601  Q
    ||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
T  46416133 atagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 46416186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 49245285 - 49245176
Alignment:
Q  30 tttataacttgtcttcaacctacctagtccctaccatcttcctctttttcagatcctgaatttttgttcagctaccttggtttcttagtgtttttcccaa 129  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||     
T  49245285 tttataacttgtcttcaacgtacgtagtccctaccatctccctctttttcagat-ctgaatttttgtttaactaccttggtttcttagtgtttttcccat 49245187  T
Q  130 tcattgctcat 140  Q
     ||||||||||    
T  49245186 ccattgctcat 49245176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 10029994 - 10030115
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || |||  ||||||||||| | ||||||||| |||||    
T  10029994 ggcgagttttagcatggggcaattgtcaaattgctctatcttagatcaattttgttttatttgctattagttgtacatcctgaatttttatattccaatt 10030093  T
Q  551 tataaccctattcaattataat 572  Q
    || |||| ||||||||||||||    
T  10030094 tacaaccatattcaattataat 10030115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 10257717 - 10257838
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||  ||||||||||| | ||||||||| |||||    
T  10257717 ggcgagttttagcatgaggcaattgtcaaattgctctatcttagatcaattttgttttatttgctattagttgtacatcctgaatttttatattccaatt 10257816  T
Q  551 tataaccctattcaattataat 572  Q
    ||||||| ||||||||||||||    
T  10257817 tataaccatattcaattataat 10257838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 477 - 601
Target Start/End: Complemental strand, 38507909 - 38507781
Alignment:
Q  477 tgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttga 576  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||| |||| | | ||||||||||| |||||||||  |||| |||||||||||||||    
T  38507909 tgaaattgccccatcttagatcaattttgttttatttgctgttacatttacaccttacattttatattccaatttatagtcctactcaattataatttga 38507810  T
Q  577 ctca----aatttacttgtaaatacatta 601  Q
    ||||    |||||||||||||||||||||    
T  38507809 ctcaaattaatttacttgtaaatacatta 38507781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 10181347 - 10181468
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    ||||||||||||||||||||| |||| ||||| | | |||||||||||||||||||||||||||| |||  ||||||||||| | ||||||||| |||||    
T  10181347 ggcgagttttagcatggggcagttgtcaaattgctccatcttagatcaattttgttttatttactattagttgtacatcctgaatttttatattccaatt 10181446  T
Q  551 tataaccctattcaattataat 572  Q
    ||||||  |||||| |||||||    
T  10181447 tataacaatattcatttataat 10181468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 10124915 - 10125036
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||| |||| |||||||||| |||||  ||||| ||||||||||||| |||||||| || |||  ||||||||||| | ||||||||| |||||    
T  10124915 ggcgagttttggcattgggcaattgtcaaattgtcctattttagatcaattttattttatttgctattagttgtacatcctgaatttttatattccaatt 10125014  T
Q  551 tataaccctattcaattataat 572  Q
    ||||||| ||||||||||||||    
T  10125015 tataaccatattcaattataat 10125036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 572
Target Start/End: Complemental strand, 51801550 - 51801429
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||  | |||  ||||||| ||||| ||||| ||| |||||    
T  51801550 ggcgagttttagcatgggacaattgtcaaattactcaatcttagatcaattttgttttatttgttattaattgtacattctgcatttttacattccaatt 51801451  T
Q  551 tataaccctattcaattataat 572  Q
    |||| || |||||| |||||||    
T  51801450 tatagccatattcatttataat 51801429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 451 - 512
Target Start/End: Original strand, 13647689 - 13647750
Alignment:
Q  451 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatt 512  Q
    |||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  13647689 gggcgagttttaacatggggcaattgtcaaattgccccatcttagatcaattttgttttatt 13647750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 459 - 572
Target Start/End: Original strand, 33464155 - 33464269
Alignment:
Q  459 tttagcatgggg-caattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataacc 557  Q
    |||||||||||| |||| || ||||| ||| |||||| |||||||||||||||||| || |||  |||||||||| |||||||||||  |||||||| |     
T  33464155 tttagcatgggggcaatcgttaaattgccccatcttaaatcaattttgttttatttgctattagttgtacatcctacattttatattctaatttatacct 33464254  T
Q  558 ctattcaattataat 572  Q
     |||| |||||||||    
T  33464255 ttatttaattataat 33464269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 451 - 553
Target Start/End: Original strand, 38506981 - 38507084
Alignment:
Q  451 gggcgagttttagcatggggcaattgtga-aattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaa 548  Q
    ||||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||||||||||| || |||  ||| || |||||| ||||||||| |||    
T  38506981 gggcgagttttagcatggggcaatt-tgacaattgccccatctaagatcaattttgttttatttgctattagttgtccaccctgcatttttatattccaa 38507079  T
Q  549 tttat 553  Q
    |||||    
T  38507080 tttat 38507084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 27043971 - 27043912
Alignment:
Q  454 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    |||| ||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  27043971 cgagatttagtatggggtaattgtcaaattgccctatcttagatcaattttgttttattt 27043912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 33465014 - 33464956
Alignment:
Q  455 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||||||    
T  33465014 gagttttagcatggggcaattgtcaaattgccccaacttagatcaattttattttattt 33464956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 456 - 510
Target Start/End: Original strand, 34266839 - 34266893
Alignment:
Q  456 agttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 510  Q
    ||||||||||||||  |||||| ||||| ||| ||||||||||||||||||||||    
T  34266839 agttttagcatgggcaaattgtcaaatttccccatcttagatcaattttgtttta 34266893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 510
Target Start/End: Complemental strand, 46961727 - 46961671
Alignment:
Q  454 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 510  Q
    ||||||||||||||||  |||||| |||||  || |||||||||||||||| |||||    
T  46961727 cgagttttagcatgggtgaattgtcaaattttcccatcttagatcaattttatttta 46961671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 452 - 584
Target Start/End: Original strand, 43139149 - 43139281
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||    
T  43139149 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgctgttagatgtacaccctgcattttatattccaattt 43139248  T
Q  552 ataaccctattcaattataatttgactcaaatt 584  Q
    ||| || || ||||||||||||||| |||||||    
T  43139249 atagccatactcaattataatttgattcaaatt 43139281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 452 - 584
Target Start/End: Complemental strand, 21571042 - 21570910
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||  ||||| ||||||| |||| ||||||||||| |||||    
T  21571042 ggcgagttttagcatggggcatttgtgaaattgccctattttagatcaattttgttttatttgttgttatatgtacaccctgtattttatattttaattt 21570943  T
Q  552 ataaccctattcaattataatttgactcaaatt 584  Q
    |||  |||| |||||||||||||||||||||||    
T  21570942 atagtcctactcaattataatttgactcaaatt 21570910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 21570416 - 21570537
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||||||||||||| ||||||||| |||||    
T  21570416 ggcgagttttagtatggggcaattgtcaaattgcccaatcttagatcaattttgttttatttgctattagttgtacatcctgcatttttatattccaatt 21570515  T
Q  551 tataaccctattcaattataat 572  Q
    ||||||| |||| | |||||||    
T  21570516 tataaccatatttatttataat 21570537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 510
Target Start/End: Original strand, 42840446 - 42840504
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 510  Q
    ||||||||||||||||||  |||||| ||||| | | ||||||||||||||||||||||    
T  42840446 ggcgagttttagcatgggcaaattgtcaaatttctccatcttagatcaattttgtttta 42840504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 510
Target Start/End: Complemental strand, 45376267 - 45376207
Alignment:
Q  450 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 510  Q
    |||||||||||||| |||||  |||| | ||||| ||| ||||||||||||||||||||||    
T  45376267 agggcgagttttagtatgggcaaattatcaaatttccccatcttagatcaattttgtttta 45376207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 23268249 - 23268296
Alignment:
Q  231 atctttcatgacagcagaattgtaacaatttcatttatgctttagaag 278  Q
    ||||||||||||| || |||||||||||||||||| ||||||| ||||    
T  23268249 atctttcatgacaacataattgtaacaatttcattcatgcttttgaag 23268296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 452 - 584
Target Start/End: Original strand, 7475025 - 7475157
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||| |||| | || ||||||||||  |||||    
T  7475025 ggcgagttttagcatggggcaattatgaaattaccccatcttagattaattttgttttatttgctgttacatatacaccatgtattttatattctaattt 7475124  T
Q  552 ataaccctattcaattataatttgactcaaatt 584  Q
    ||||||||||| |||||||||||||||||||||    
T  7475125 ataaccctatttaattataatttgactcaaatt 7475157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 455 - 601
Target Start/End: Complemental strand, 28870467 - 28870317
Alignment:
Q  455 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttata 554  Q
    |||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  28870467 gagttttagcatggggtaattgtgaaattgctccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaatttata 28870368  T
Q  555 accctattcaattataatttgactca----aatttacttgtaaatacatta 601  Q
       ||| |||||||||||||||||||    |||||||||||||||||||||    
T  28870367 gttctactcaattataatttgactcaaattaatttacttgtaaatacatta 28870317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 451 - 601
Target Start/End: Complemental strand, 47514484 - 47514338
Alignment:
Q  451 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 550  Q
    ||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||    
T  47514484 gggcgagttttagcatggggcaattg--------ccccatcttagatcaattttgttttatttgctgttacatgtacaccctgcattttatattctaatt 47514393  T
Q  551 tataaccctattcaattataatttgactca----aatttacttgtaaatacatta 601  Q
    ||||  | || |||||| ||||||||||||    |||||||||||||||||||||    
T  47514392 tatagtcatactcaattgtaatttgactcaaattaatttacttgtaaatacatta 47514338  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 28869836 - 28869961
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttact----gttacatgtacatcctgca-ttttatatttc 546  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||    ||||  |||||||| |||| ||||||||| |    
T  28869836 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttaattgtacatcttgcatttttatattcc 28869935  T
Q  547 aatttataaccctattcaattataat 572  Q
    |||||||| || |||||| |||||||    
T  28869936 aatttatagccatattcatttataat 28869961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 47513543 - 47513664
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 550  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||| || ||| || ||||| |||||||||    
T  47513543 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttgtccaccctacatttttacatttcaatt 47513642  T
Q  551 tataaccctattcaattataat 572  Q
    |||| || |||| | |||||||    
T  47513643 tatagccatatttatttataat 47513664  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 513
Target Start/End: Complemental strand, 44185862 - 44185801
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    |||||||||||||||||||||||||| |||||  || |||||||||||||||| ||||||||    
T  44185862 ggcgagttttagcatggggcaattgtcaaattgtcccatcttagatcaattttattttattt 44185801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 451 - 601
Target Start/End: Complemental strand, 38826027 - 38825873
Alignment:
Q  451 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 550  Q
    ||||||||||| ||||||||| ||||||||||| |   ||||||||| |||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  38826027 gggcgagtttttgcatggggcgattgtgaaattgcttcatcttagataaattttgttttatttgatgttacatgtacaccctgcattttatatttcaatt 38825928  T
Q  551 tataaccctattcaattataatttgactca----aatttacttgtaaatacatta 601  Q
    |||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
T  38825927 tatagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 38825873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 458 - 584
Target Start/End: Complemental strand, 40133796 - 40133670
Alignment:
Q  458 ttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataacc 557  Q
    |||||||| |||||| |||||||||| ||| |||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||| ||    
T  40133796 ttttagcacggggcagttgtgaaattgccccatcttaaatcaattttgttttatttgctgttagatgtacaccctgcattttatattccaatttatagcc 40133697  T
Q  558 ctattcaattataatttgactcaaatt 584  Q
    ||| ||||||||||||||| |||||||    
T  40133696 ctactcaattataatttgattcaaatt 40133670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 451 - 572
Target Start/End: Original strand, 1156131 - 1156253
Alignment:
Q  451 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcct-gcattttatatttcaat 549  Q
    ||||| ||||||||||||||||||||| |||||   | |||||| |||||||||||||||||| || |||  ||||||| ||   |||||||||||||||    
T  1156131 gggcgggttttagcatggggcaattgttaaattgttccatcttaaatcaattttgttttatttgctattaattgtacattctataattttatatttcaat 1156230  T
Q  550 ttataaccctattcaattataat 572  Q
    ||||| | ||||| |||||||||    
T  1156231 ttatagctctatttaattataat 1156253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 526
Target Start/End: Complemental strand, 1157004 - 1156930
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgta 526  Q
    |||||||||||||||||| |||||||||||||| || | ||||||||||||||||||||||| || |||| ||||    
T  1157004 ggcgagttttagcatgggacaattgtgaaattatcccaacttagatcaattttgttttatttgctattacttgta 1156930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 526
Target Start/End: Original strand, 2283628 - 2283702
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgta 526  Q
    ||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||| || |||| ||||    
T  2283628 ggcgagttttagcatggagcaattgtgaaattgccccaacttagatcaattttgttttatttgctattacttgta 2283702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 572
Target Start/End: Complemental strand, 2285641 - 2285557
Alignment:
Q  489 atcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttataaccctattcaattataat 572  Q
    |||||| |||||||||||||||||| || |||  |||||||||| || ||||||||||||||||||| | ||||| |||||||||    
T  2285641 atcttaaatcaattttgttttatttgctattagttgtacatcctacaattttatatttcaatttatagctctatttaattataat 2285557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 513
Target Start/End: Original strand, 40129171 - 40129232
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    |||| |||||||||||||| |||||| ||||| | | |||||||||||||||| ||||||||    
T  40129171 ggcgtgttttagcatggggtaattgtcaaattgctccatcttagatcaattttcttttattt 40129232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 452 - 584
Target Start/End: Complemental strand, 60473 - 60341
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||| || ||||||||||| | || ||||||||||  |||||    
T  60473 ggcgagttttagcatggggcaattgtcaaattgctccatcttagatcaattttgttttatttgctattacatgtacaccttgtattttatattctaattt 60374  T
Q  552 ataaccctattcaattataatttgactcaaatt 584  Q
    |||  |||| |||||||||||||||||||||||    
T  60373 atagtcctactcaattataatttgactcaaatt 60341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 16237 - 16357
Alignment:
Q  452 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 551  Q
    |||| |||||||||| || ||||||| |||||   | ||||||||||||||||||||||||| ||  ||  |||||||||| ||||||||||||||||||    
T  16237 ggcgggttttagcataggacaattgttaaattggtccatcttagatcaattttgttttatttgctactagctgtacatcctacattttatatttcaattt 16336  T
Q  552 ataaccctattcaattataat 572  Q
    ||| | ||||| |||||||||    
T  16337 atagctctatttaattataat 16357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 450 - 513
Target Start/End: Complemental strand, 17104 - 17041
Alignment:
Q  450 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 513  Q
    |||| ||||||||||||||| ||||||||||||| ||  | |||||||||||||||||||||||    
T  17104 agggtgagttttagcatgggacaattgtgaaattgcctcaacttagatcaattttgttttattt 17041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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