View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_low_12 (Length: 297)

Name: NF1167_low_12
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_low_12
NF1167_low_12
[»] chr7 (3 HSPs)
chr7 (57-156)||(4542475-4542574)
chr7 (57-91)||(4546419-4546453)
chr7 (189-224)||(10431737-10431772)
[»] chr3 (2 HSPs)
chr3 (57-156)||(54460811-54460909)
chr3 (189-227)||(16185270-16185308)
[»] chr2 (2 HSPs)
chr2 (57-151)||(25870291-25870385)
chr2 (57-151)||(25873658-25873752)
[»] chr4 (2 HSPs)
chr4 (144-227)||(15431520-15431604)
chr4 (144-227)||(15438134-15438218)
[»] chr6 (1 HSPs)
chr6 (111-152)||(34501819-34501860)
[»] chr5 (1 HSPs)
chr5 (189-224)||(28441795-28441830)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 4542574 - 4542475
Alignment:
Q  57 tgttgcttcctgtagtgatatgcttgttcccgtttttcttctccaacaagtgacaaacgtgattcttgccgtaaccgtgatgtcaccagcgtgaataatt 156  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4542574 tgttgcttcctgcagtgatatgcttgttcccgtttttcttctccaacaagtgccaaacgtgattcttgccgtaaccgtgatgtcaccagcgtgaataatt 4542475  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 4546453 - 4546419
Alignment:
Q  57 tgttgcttcctgtagtgatatgcttgttcccgttt 91  Q
    |||||||||||||||||||||||||||||||||||    
T  4546453 tgttgcttcctgtagtgatatgcttgttcccgttt 4546419  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 10431772 - 10431737
Alignment:
Q  189 ttgtaacctagtttcttcctttctccccaagcatgt 224  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10431772 ttgtaacctagtttctttctttctccccaagcatgt 10431737  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 54460909 - 54460811
Alignment:
Q  57 tgttgcttcctgtagtgatatgcttgttcccgtttttcttctccaacaagtgacaaacgtgattcttgccgtaaccgtgatgtcaccagcgtgaataatt 156  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||    
T  54460909 tgttgcttcct-tagtgatatgcttgttcccgtttttcttctccaacaagtgccaaacgtgattcttgccgtaaccgtgatgtcaccatcttgaataatt 54460811  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 16185270 - 16185308
Alignment:
Q  189 ttgtaacctagtttcttcctttctccccaagcatgtcac 227  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  16185270 ttgtaacctagtttctttctttctccccaagcatgtcac 16185308  T

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Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 25870385 - 25870291
Alignment:
Q  57 tgttgcttcctgtagtgatatgcttgttcccgtttttcttctccaacaagtgacaaacgtgattcttgccgtaaccgtgatgtcaccagcgtgaa 151  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  25870385 tgttgcttcctgtagtgatatgcttgttccggtttttcttctccaacaagtgccaaaggtgattcttgtcgtaaccgtgatgtcaccagcgtgaa 25870291  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 25873752 - 25873658
Alignment:
Q  57 tgttgcttcctgtagtgatatgcttgttcccgtttttcttctccaacaagtgacaaacgtgattcttgccgtaaccgtgatgtcaccagcgtgaa 151  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |||||||    
T  25873752 tgttgcttcctgcagtgatatgcttgttccggtttttcttctccaacaagtgccaaaggtgattcttgtcgtaaccgtgatgtcaccggcgtgaa 25873658  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 15431604 - 15431520
Alignment:
Q  144 agcgtgaataattcttgtgctgtaacatcaatgtc-ttttatagccttgtaacctagtttcttcctttctccccaagcatgtcac 227  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15431604 agcgtgaataaatcttgtgctgtaacatcaatgtccttttatagccttgtaacctagtttcttcctttctccccaagcatgtcac 15431520  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 15438218 - 15438134
Alignment:
Q  144 agcgtgaataattcttgtgctgtaacatcaatgtc-ttttatagccttgtaacctagtttcttcctttctccccaagcatgtcac 227  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15438218 agcgtgaataaatcttgtgctgtaacatcaatgtccttttatagccttgtaacctagtttcttcctttctccccaagcatgtcac 15438134  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 34501860 - 34501819
Alignment:
Q  111 aaacgtgattcttgccgtaaccgtgatgtcaccagcgtgaat 152  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  34501860 aaacgtgatccttgccgtaaccgtgatgtcaccagcgtgaat 34501819  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 28441795 - 28441830
Alignment:
Q  189 ttgtaacctagtttcttcctttctccccaagcatgt 224  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28441795 ttgtaacctagtttctttctttctccccaagcatgt 28441830  T

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