View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_low_19 (Length: 258)

Name: NF1167_low_19
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_low_19
NF1167_low_19
[»] chr5 (11 HSPs)
chr5 (45-229)||(39168575-39168759)
chr5 (45-226)||(39399576-39399760)
chr5 (45-205)||(39726111-39726271)
chr5 (45-205)||(39879513-39879673)
chr5 (45-201)||(38987402-38987558)
chr5 (45-201)||(40417992-40418148)
chr5 (55-201)||(1849671-1849817)
chr5 (55-169)||(3299232-3299346)
chr5 (55-169)||(3392125-3392239)
chr5 (55-201)||(1163949-1164095)
chr5 (70-132)||(40596400-40596462)
[»] chr4 (1 HSPs)
chr4 (49-201)||(25912524-25912676)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 39168759 - 39168575
Alignment:
Q  45 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39168759 gacaatatcaagaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtc 39168660  T
Q  145 aaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaatatttgcaccgagagtagcagcaacattag 229  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39168659 aaggtaaatggatcaagtaaagtaatttttttggcaaccctagtgcatataacaatatttgcaccgagagtagcagcaatattag 39168575  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 39399760 - 39399576
Alignment:
Q  45 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 144  Q
    ||||||||  ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||    
T  39399760 gacaatattgagaacaaaatatttgactaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtc 39399661  T
Q  145 aaggtaaatggatcaagtaa---agtaannnnnnnggcaaccctagtgcatataacaatatttgcaccgagagtagcagcaacat 226  Q
    ||||||||||||||||| ||   |||||       |||||||||||||||||| ||||||||||||||||  | |||||||||||    
T  39399660 aaggtaaatggatcaagcaaagtagtaatttttttggcaaccctagtgcatatgacaatatttgcaccgaacgaagcagcaacat 39399576  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 45 - 205
Target Start/End: Complemental strand, 39726271 - 39726111
Alignment:
Q  45 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 144  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| | |||| || |    |||    
T  39726271 gacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtc 39726172  T
Q  145 aaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaatatttg 205  Q
    ||||||||||||||||| |||||||       |||||||||||||||||| ||||||||||    
T  39726171 aaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaatatttg 39726111  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 45 - 205
Target Start/End: Complemental strand, 39879673 - 39879513
Alignment:
Q  45 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 144  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| | |||| || |    |||    
T  39879673 gacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtc 39879574  T
Q  145 aaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaatatttg 205  Q
    ||||||||||||||||| |||||||       |||||||||||||||||| ||||||||||    
T  39879573 aaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaatatttg 39879513  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 38987558 - 38987402
Alignment:
Q  45 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 144  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| | |||| || |    |||    
T  38987558 gacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtc 38987459  T
Q  145 aaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 201  Q
    ||||||||||||||||| |||||||       |||||||||||||||||| ||||||    
T  38987458 aaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 38987402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 40418148 - 40417992
Alignment:
Q  45 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 144  Q
    |||| |||| ||||||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| | |||| || |    |||    
T  40418148 gacagtatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtc 40418049  T
Q  145 aaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 201  Q
    ||||||||||||||||| |||||||       ||||||||||||||| || ||||||    
T  40418048 aaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaata 40417992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 1849817 - 1849671
Alignment:
Q  55 agaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagc-agtcaaggtaaat 153  Q
    |||||||||||||  |||||||||  ||||| ||||||| ||||||||||||||| ||||||  ||||||||||||| |||| |||  ||||||||||||    
T  1849817 agaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaa-gaaacagcgggtcaaggtaaat 1849719  T
Q  154 ggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 201  Q
    |||||||| |||||||       |||||||||||| || |||||||||    
T  1849718 ggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaata 1849671  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 3299346 - 3299232
Alignment:
Q  55 agaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtcaaggtaaatg 154  Q
    |||||||||||||  |||||||||| ||||| ||||||| ||||||||||||||| |||||| ||| ||||||||||| || |    |||||||||||||    
T  3299346 agaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 3299247  T
Q  155 gatcaagtaaagtaa 169  Q
    ||||||| |||||||    
T  3299246 gatcaagcaaagtaa 3299232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 3392239 - 3392125
Alignment:
Q  55 agaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtcaaggtaaatg 154  Q
    |||||||||||||  |||||||||| ||||| ||||||| ||||||||||||||| |||||| ||| ||||||||||| || |    |||||||||||||    
T  3392239 agaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 3392140  T
Q  155 gatcaagtaaagtaa 169  Q
    ||||||| |||||||    
T  3392139 gatcaagcaaagtaa 3392125  T

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Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 201
Target Start/End: Original strand, 1163949 - 1164095
Alignment:
Q  55 agaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtcaaggtaaatg 154  Q
    |||||| ||||||  |||||||||| ||||| ||||||| ||||||||||||||| |||||| ||| ||||||||||| || |    |||||||||||||    
T  1163949 agaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 1164048  T
Q  155 gatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 201  Q
    ||||||| |||||||       |||||||||||| || |||||||||    
T  1164049 gatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 1164095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 40596462 - 40596400
Alignment:
Q  70 actaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaag 132  Q
    ||||||||| ||||||||| |||| |||||||  |||||||||||||||||||| | ||||||    
T  40596462 actaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaag 40596400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 201
Target Start/End: Original strand, 25912524 - 25912676
Alignment:
Q  49 atatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtcaagg 148  Q
    ||||||||||||| |||||  |||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| ||| || ||  ||||||||    
T  25912524 atatcaagaacaatatattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaagg 25912623  T
Q  149 taaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 201  Q
    |||||||||||||||||||||       ||||||||||||||| || ||||||    
T  25912624 taaatggatcaagtaaagtaaatgttttggcaaccctagtgcaaatgacaata 25912676  T

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