View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_low_2 (Length: 512)

Name: NF1167_low_2
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_low_2
NF1167_low_2
[»] scaffold0413 (1 HSPs)
scaffold0413 (180-512)||(8838-9171)
[»] chr7 (12 HSPs)
chr7 (183-512)||(15873865-15874186)
chr7 (99-411)||(22077550-22077860)
chr7 (191-466)||(21491459-21491739)
chr7 (181-466)||(18367293-18367577)
chr7 (182-392)||(48576332-48576540)
chr7 (172-323)||(48654339-48654488)
chr7 (182-318)||(9993291-9993427)
chr7 (169-224)||(10289388-10289443)
chr7 (176-269)||(12196729-12196822)
chr7 (457-505)||(21491395-21491443)
chr7 (185-223)||(11036685-11036723)
chr7 (182-219)||(7503909-7503946)
[»] chr3 (14 HSPs)
chr3 (181-512)||(46404491-46404814)
chr3 (182-465)||(5004687-5004970)
chr3 (172-378)||(16975243-16975450)
chr3 (180-460)||(11967862-11968131)
chr3 (182-285)||(16475278-16475381)
chr3 (405-466)||(16975453-16975515)
chr3 (459-512)||(5004623-5004676)
chr3 (169-258)||(7337257-7337346)
chr3 (457-503)||(16975531-16975577)
chr3 (182-269)||(9104174-9104261)
chr3 (193-286)||(17542813-17542904)
chr3 (297-349)||(8730913-8730966)
chr3 (297-349)||(9082800-9082853)
chr3 (457-502)||(11937780-11937825)
[»] chr6 (14 HSPs)
chr6 (183-512)||(34636188-34636503)
chr6 (182-466)||(25005144-25005429)
chr6 (181-466)||(23260544-23260829)
chr6 (182-466)||(32450228-32450512)
chr6 (356-465)||(10751527-10751636)
chr6 (99-198)||(194608-194707)
chr6 (183-282)||(26182602-26182700)
chr6 (171-234)||(10751623-10751686)
chr6 (169-286)||(13777247-13777362)
chr6 (459-512)||(10751463-10751516)
chr6 (182-257)||(11166587-11166662)
chr6 (457-502)||(23260483-23260528)
chr6 (183-347)||(24992418-24992578)
chr6 (457-512)||(32450157-32450212)
[»] chr1 (13 HSPs)
chr1 (181-466)||(35762015-35762303)
chr1 (102-317)||(37667265-37667479)
chr1 (184-411)||(9537377-9537602)
chr1 (339-466)||(37667144-37667271)
chr1 (99-258)||(337977-338135)
chr1 (182-349)||(16074710-16074879)
chr1 (99-258)||(43407930-43408090)
chr1 (38-102)||(5178272-5178336)
chr1 (169-304)||(21264718-21264853)
chr1 (183-286)||(6835953-6836056)
chr1 (457-512)||(37667081-37667136)
chr1 (457-512)||(35761944-35761999)
chr1 (182-223)||(8421574-8421615)
[»] chr5 (5 HSPs)
chr5 (263-512)||(536895-537136)
chr5 (183-343)||(536731-536891)
chr5 (178-466)||(4557935-4558226)
chr5 (182-269)||(27026621-27026708)
chr5 (457-502)||(4557874-4557919)
[»] chr4 (5 HSPs)
chr4 (182-411)||(28969204-28969431)
chr4 (215-466)||(49499045-49499297)
chr4 (99-269)||(40458822-40458992)
chr4 (149-286)||(69218-69352)
chr4 (457-507)||(49499313-49499363)
[»] chr2 (6 HSPs)
chr2 (180-333)||(32735391-32735544)
chr2 (99-258)||(40447350-40447508)
chr2 (180-349)||(1193597-1193765)
chr2 (182-286)||(12774954-12775056)
chr2 (182-286)||(28267692-28267793)
chr2 (249-341)||(29270702-29270792)
[»] scaffold1838 (1 HSPs)
scaffold1838 (227-405)||(221-397)
[»] scaffold0120 (1 HSPs)
scaffold0120 (182-257)||(2645-2720)
[»] chr8 (5 HSPs)
chr8 (169-286)||(22816487-22816602)
chr8 (249-349)||(35839168-35839268)
chr8 (184-269)||(40841568-40841652)
chr8 (181-257)||(20264999-20265075)
chr8 (181-257)||(21051628-21051704)
[»] scaffold0013 (1 HSPs)
scaffold0013 (169-286)||(243170-243287)
[»] scaffold0002 (1 HSPs)
scaffold0002 (182-257)||(356884-356959)


Alignment Details
Target: scaffold0413 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 180 - 512
Target Start/End: Original strand, 8838 - 9171
Alignment:
Q  180 cgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  8838 cgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaact 8937  T
Q  280 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 379  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8938 aaaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgaca 9037  T
Q  380 tttatttta-tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtc 478  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9038 tttattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagattggtc 9137  T
Q  479 catgtggatgatgatatgttaatatctaactgta 512  Q
    ||||||||||||||| ||||||||||| ||||||    
T  9138 catgtggatgatgatgtgttaatatctgactgta 9171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 183 - 512
Target Start/End: Complemental strand, 15874186 - 15873865
Alignment:
Q  183 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaa 15874087  T
Q  283 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||      
T  15874086 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatggcat-- 15873989  T
Q  383 attttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatg 482  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873988 ------tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatg 15873895  T
Q  483 tggatgatgatatgttaatatctaactgta 512  Q
    ||||||||||| ||||||||||| ||||||    
T  15873894 tggatgatgatgtgttaatatctgactgta 15873865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 99 - 411
Target Start/End: Original strand, 22077550 - 22077860
Alignment:
Q  99 tctagagcgagagaaattgtgcatgctttgaacctgctaatttagagaaccttgtagtcgtttgattgggaggaaagcttacgaggtaagggctttttcc 198  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  22077550 tctagagcgagagaaatcgtgcatgctttgaacctgcaaatttagaggaccttgtagtcgtttgattgggaggaaagcttatgaggtaagggcttttttc 22077649  T
Q  199 ccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatgg 298  Q
    ||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||||  |||||||||||||||| |||| ||||||    
T  22077650 ccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaaga--aaaacaactaaaatataaatttatatgg 22077747  T
Q  299 taaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatttattttatttttctatt 398  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||  |||||||| ||||     
T  22077748 taaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgacatttgctttattttcctatg 22077847  T
Q  399 catatatgttttt 411  Q
    |||||||||||||    
T  22077848 catatatgttttt 22077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 191 - 466
Target Start/End: Complemental strand, 21491739 - 21491459
Alignment:
Q  191 ctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaactaaaatatga 288  Q
    |||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||  ||||| |||||||||||||    
T  21491739 cttttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaactaaaatatga 21491640  T
Q  289 attcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatttatttta 388  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||||||||||||    
T  21491639 atttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttatgtagaatgacatttatttta 21491541  T
Q  389 tttttctattcatatatg---tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 466  Q
    ||||  ||| ||||||||   ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  21491540 ttttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 21491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 181 - 466
Target Start/End: Complemental strand, 18367577 - 18367293
Alignment:
Q  181 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac-aaaac--aa 277  Q
    ||||||||||||||||||| |||||| | || |||| |||||||  |||||||||||||||||||||||||||||| ||||||||||||  |||||  ||    
T  18367577 gaggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgtttgttgaaaagaaagaaaaccaaa 18367478  T
Q  278 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 377  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||      || | ||||||| || ||||||    
T  18367477 ttaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta-attat------attaaaatgttacgtagaatga 18367385  T
Q  378 catttattttatttttctattcatatatg--tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 466  Q
    |||||||||||||||  ||| ||||||||  ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  18367384 catttattttattttgatatgcatatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 18367293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 182 - 392
Target Start/End: Original strand, 48576332 - 48576540
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 281  Q
    ||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||| |||||||||||||| || ||| |||||   |||| || |||    
T  48576332 aggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattcttatccgttaaaaag---aaaataattaa 48576428  T
Q  282 aatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat 380  Q
    |||||||||| ||||||||||||||||  | |||| ||||||||||| ||||||||||| ||||||||||| || |||||||||| |||  |||||||||    
T  48576429 aatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatgcagaatgacat 48576528  T
Q  381 ttattttatttt 392  Q
    ||||| ||||||    
T  48576529 ttattctatttt 48576540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 323
Target Start/End: Complemental strand, 48654488 - 48654339
Alignment:
Q  172 aaagcttacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaaca 271  Q
    ||||||| ||||||||||| ||||||||||||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||||||| ||| |||||  |    
T  48654488 aaagctttcgaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttgtcttttggaaaga--a 48654391  T
Q  272 aaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagtt 323  Q
    |||||||||||||||  ||| |  |||||| |||||||  |||| |||||||    
T  48654390 aaacaactaaaatatatatttaggtggtaatatttaacagtttacaaaagtt 48654339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 318
Target Start/End: Original strand, 9993291 - 9993427
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 281  Q
    |||||||||||||||||||| ||||||||||||||| |||||  | |||||| || ||  ||||   |||||||||| |||||||||| ||||||| |||    
T  9993291 aggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtcttttgaaaagaagaaaacaattaa 9993390  T
Q  282 aatatgaattcatatggtaaaatttaaccttttataa 318  Q
    |||||  ||| |||||||||||| |||  ||||||||    
T  9993391 aatatttatttatatggtaaaatctaatattttataa 9993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 10289443 - 10289388
Alignment:
Q  169 aggaaagcttacgaggtaagggctttttccccatacgttcttactaagtactagga 224  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  10289443 aggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctagga 10289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 12196822 - 12196729
Alignment:
Q  176 cttacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 269  Q
    ||||| ||||||||||||||||||||||| |||||||||||| | |||| |||||||| || ||  |||||  |||||||||| || |||||||    
T  12196822 cttacaaggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaa 12196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 21491443 - 21491395
Alignment:
Q  457 atgaaaatatttcagtttggtccatgtggatgatgatatgttaatatct 505  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  21491443 atgaaaatatttcattttggttcatgtggatgatgatgtgttaatatct 21491395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 11036723 - 11036685
Alignment:
Q  185 taagggctttttccccatacgttcttactaagtactagg 223  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  11036723 taagggctttttccccacacgttcttactaagtgctagg 11036685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 7503909 - 7503946
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtac 219  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  7503909 aggtaagggctttttccccatacgtccatactaagtac 7503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 181 - 512
Target Start/End: Complemental strand, 46404814 - 46404491
Alignment:
Q  181 gaggtaagggcttttt-ccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 279  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46404814 gaggtaagggcttttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 46404715  T
Q  280 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |     
T  46404714 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatggc- 46404616  T
Q  380 tttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtcc 479  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404615 --------atttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtcc 46404524  T
Q  480 atgtggatgatgatatgttaatatctaactgta 512  Q
    |||||||||||||| ||||||||||| ||||||    
T  46404523 atgtggatgatgatgtgttaatatctgactgta 46404491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 182 - 465
Target Start/End: Complemental strand, 5004970 - 5004687
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaactaa 5004871  T
Q  282 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatt 381  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5004870 aatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacatt 5004771  T
Q  382 tattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004770 tattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 5004687  T

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Target: chr3; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 172 - 378
Target Start/End: Original strand, 16975243 - 16975450
Alignment:
Q  172 aaagcttacgaggtaagggctttttcccc-atacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 270  Q
    |||||||||||||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  16975243 aaagcttacgaggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattcttgtttgttgaaaagaac 16975342  T
Q  271 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  16975343 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgt 16975442  T
Q  371 ggaatgac 378  Q
    ||||||||    
T  16975443 ggaatgac 16975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 180 - 460
Target Start/End: Complemental strand, 11968131 - 11967862
Alignment:
Q  180 cgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaa 277  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| |||||||||      |||||||||||||      |||||||||  ||||| |     
T  11968131 cgaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttatga------ggtagagattctt------tgaaaagaagacaaaaaat 11968045  T
Q  278 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 377  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || | ||||||  || ||||||    
T  11968044 ctaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgtgtgtat-aaaatgttccgtagaatga 11967946  T
Q  378 catttattttatttttctattcatatatg--tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatga 460  Q
    |||||||||||||||  ||| ||||||||  ||||||||||||| | |||||||||||  | |||| |||||||||||| ||||||    
T  11967945 catttattttattttgatatgcatatatgtttttttgtggtattgggaaagaagtgtt--attttgttgataaactaaagaaatga 11967862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 182 - 285
Target Start/End: Original strand, 16475278 - 16475381
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 281  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16475278 aggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 16475377  T
Q  282 aata 285  Q
    ||||    
T  16475378 aata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 405 - 466
Target Start/End: Original strand, 16975453 - 16975515
Alignment:
Q  405 tgtttttgtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaaaatat 466  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16975453 tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 16975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 459 - 512
Target Start/End: Complemental strand, 5004676 - 5004623
Alignment:
Q  459 gaaaatatttcagtttggtccatgtggatgatgatatgttaatatctaactgta 512  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  5004676 gaaaatatttcagtttggtccatgtggatgatgatgtgttaatatcttactgta 5004623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 7337346 - 7337257
Alignment:
Q  169 aggaaagcttacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 258  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  7337346 aggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 7337257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 457 - 503
Target Start/End: Original strand, 16975531 - 16975577
Alignment:
Q  457 atgaaaatatttcagtttggtccatgtggatgatgatatgttaatat 503  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  16975531 atgaaaatatttcagtttggttcatgtggatgatgatgtgttaatat 16975577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 9104174 - 9104261
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 269  Q
    ||||||||| |||||||||||||||| |||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  9104174 aggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 9104261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 17542904 - 17542813
Alignment:
Q  193 ttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 286  Q
    |||||||||||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| |||||||||  ||||||| ||||||||    
T  17542904 ttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaaga--aaaacaattaaaatat 17542813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  297 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 349  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  297 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 349  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 11937825 - 11937780
Alignment:
Q  457 atgaaaatatttcagtttggtccatgtggatgatgatatgttaata 502  Q
    |||||||||||| | |||||| ||||||||||||||| ||||||||    
T  11937825 atgaaaatattttattttggttcatgtggatgatgatgtgttaata 11937780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 183 - 512
Target Start/End: Original strand, 34636188 - 34636503
Alignment:
Q  183 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 34636287  T
Q  283 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||      
T  34636288 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggcatgacat-- 34636385  T
Q  383 attttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatg 482  Q
          |||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636386 ------tttttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatg 34636473  T
Q  483 tggatgatgatatgttaatatctaactgta 512  Q
    ||||||||||| ||||||||||| ||||||    
T  34636474 tggatgatgatgtgttaatatctgactgta 34636503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 182 - 466
Target Start/End: Original strand, 25005144 - 25005429
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 281  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25005144 aggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 25005243  T
Q  282 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatt 381  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  25005244 aataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatgacatt 25005343  T
Q  382 tattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 466  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25005344 tattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 25005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 181 - 466
Target Start/End: Complemental strand, 23260829 - 23260544
Alignment:
Q  181 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 280  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23260829 gaggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaacta 23260730  T
Q  281 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat 380  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  23260729 aaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtggaatgacat 23260630  T
Q  381 ttattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 466  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  23260629 ttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaatat 23260544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 182 - 466
Target Start/End: Complemental strand, 32450512 - 32450228
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 281  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32450512 aggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 32450414  T
Q  282 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatt 381  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  32450413 aatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtggaatgacatt 32450314  T
Q  382 tattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 466  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  32450313 tattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaatat 32450228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 356 - 465
Target Start/End: Complemental strand, 10751636 - 10751527
Alignment:
Q  356 atgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751636 atgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 10751537  T
Q  456 aatgaaaata 465  Q
    ||||||||||    
T  10751536 aatgaaaata 10751527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 194608 - 194707
Alignment:
Q  99 tctagagcgagagaaattgtgcatgctttgaacctgctaatttagagaaccttgtagtcgtttgattgggaggaaagcttacgaggtaagggctttttcc 198  Q
    |||||||||||| ||||  ||||||| |||||||||| ||||||||||||||| ||||  |||||||||||||||||| ||| ||||||| |||||||||    
T  194608 tctagagcgagataaatcatgcatgcattgaacctgcgaatttagagaaccttatagttctttgattgggaggaaagcgtacaaggtaagagctttttcc 194707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 183 - 282
Target Start/End: Complemental strand, 26182700 - 26182602
Alignment:
Q  183 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 282  Q
    ||||||||||||||||||||| || | ||||||||| |||||| ||||||||||||| || ||||||||||||| |||||| ||||| ||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgtatgttgagaagaa-aaaacaactaaa 26182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 10751686 - 10751623
Alignment:
Q  171 gaaagcttacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatg 234  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  10751686 gaaagcttacgaggtaagggccttttccccatacattcttactaagtactatgataatgttatg 10751623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 13777362 - 13777247
Alignment:
Q  169 aggaaagcttacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaaga 268  Q
    ||||||||||||||||||||| |||||||||| ||||| | || ||| ||||||||| ||||| ||||||| | ||| | |||||| ||| ||| |||||    
T  13777362 aggaaagcttacgaggtaaggactttttccccgtacgtccataataaatactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaaga 13777263  T
Q  269 acaaaacaactaaaatat 286  Q
      ||||||||||||||||    
T  13777262 --aaaacaactaaaatat 13777247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 459 - 512
Target Start/End: Complemental strand, 10751516 - 10751463
Alignment:
Q  459 gaaaatatttcagtttggtccatgtggatgatgatatgttaatatctaactgta 512  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  10751516 gaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgta 10751463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 11166662 - 11166587
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 257  Q
    ||||||||||||||||||||||||||||||||||||  ||||||  | ||||||| ||  |||||||||| |||||    
T  11166662 aggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatttttgtc 11166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 23260528 - 23260483
Alignment:
Q  457 atgaaaatatttcagtttggtccatgtggatgatgatatgttaata 502  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  23260528 atgaaaatatttcagtttggttcatgtggatgatgatgtgttaata 23260483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 347
Target Start/End: Original strand, 24992418 - 24992578
Alignment:
Q  183 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 282  Q
    ||||||||||||||||| ||| ||   || |||||||||||  |||||||||||||| | ||||| |||||||| | |||||||||  ||||||| ||||    
T  24992418 ggtaagggctttttccc-atatgtctatattaagtactagggatatgttatgaattataagtagaaattcttgt-ttttgaaaaga--aaaacaattaaa 24992513  T
Q  283 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 347  Q
    ||||   || |  ||||||||||||  ||||||||||| | |||| ||||||||  |||||||||    
T  24992514 atatttctttacgtggtaaaatttattcttttataaaactgattattttaattaagttttatatg 24992578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 32450212 - 32450157
Alignment:
Q  457 atgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctaactgta 512  Q
    |||||||||||||| |||||| |||||| |||||||| ||||||||||| ||||||    
T  32450212 atgaaaatatttcattttggttcatgtgcatgatgatgtgttaatatctgactgta 32450157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 181 - 466
Target Start/End: Complemental strand, 35762303 - 35762015
Alignment:
Q  181 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 280  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  35762303 gaggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaacta 35762204  T
Q  281 aaatatgaattcatatggtaaaatttaaccttttat--aaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac 378  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  35762203 aaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatgttatgtggaatgac 35762104  T
Q  379 atttattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 466  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||    
T  35762103 atttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaatat 35762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 102 - 317
Target Start/End: Complemental strand, 37667479 - 37667265
Alignment:
Q  102 agagcgagagaaattgtgcatgctttgaacctgctaatttagagaaccttgtagtcgtttgattgggaggaaagcttacgaggtaagggctttttcccca 201  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||||| |||||||||||    
T  37667479 agagcgagagaaatcgtgcatgctttgaacctgcaaatttagaggaccttgtagttgtttgattgggaggaaagcttatgaggtaagg-ctttttcccca 37667381  T
Q  202 tacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaa 301  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37667380 tacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatgataa 37667281  T
Q  302 aatttaaccttttata 317  Q
    ||||||||||||||||    
T  37667280 aatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 184 - 411
Target Start/End: Complemental strand, 9537602 - 9537377
Alignment:
Q  184 gtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaa 283  Q
    |||||||||||| || ||||||| | |||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||  |||||| |||||    
T  9537602 gtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgtctgttgagaagaa--aaacaagtaaaa 9537505  T
Q  284 tatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattta 383  Q
    ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||    
T  9537504 tataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtagaatgacattta 9537405  T
Q  384 ttttatttttctattcatatatgttttt 411  Q
    ||| || || |||| | |||||||||||    
T  9537404 tttcatgttgctatgcgtatatgttttt 9537377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 339 - 466
Target Start/End: Complemental strand, 37667271 - 37667144
Alignment:
Q  339 ttttatatgatgtctgcatgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 438  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 37667172  T
Q  439 tgctgataaactaaataaatgaaaatat 466  Q
    ||||||||||||||||||||||||||||    
T  37667171 tgctgataaactaaataaatgaaaatat 37667144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 337977 - 338135
Alignment:
Q  99 tctagagcgagagaaattgtgcatgctttgaacctgctaatttagagaaccttgtagtcgtttgattgggaggaaagcttacgaggtaagggctttttcc 198  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  337977 tctagagcgagataaattgtccatgctttgaacctgcaaatttagaggaccttgtagtcgtttgattgggaggaaagcttacgaggtaagggctttttcc 338076  T
Q  199 ccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 258  Q
    |||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  338077 ccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 182 - 349
Target Start/End: Original strand, 16074710 - 16074879
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatg---ttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaac 278  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||| |||   |||||||||| || |||||||| ||||| ||| |||||||  ||||||     
T  16074710 aggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatttttgtccgttaaaaagaa--aaacaat 16074807  T
Q  279 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 349  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074808 taaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 43408090 - 43407930
Alignment:
Q  99 tctagagcgagagaaattgtgcatgctttgaacctgctaatttagagaaccttgtagtcgtttga-ttgggaggaaagcttacgaggtaagggctttttc 197  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||| | || || ||||||  ||||||||||||||||||    
T  43408090 tctagagcgagagaaatcgtgcatgctttgaacctgcaaaattagaggaccttgtagtcgtttgactaggaagaaaagctctcgaggtaagggctttttc 43407991  T
Q  198 cccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 258  Q
    ||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  43407990 cccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 43407930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 5178336 - 5178272
Alignment:
Q  38 aaattgtacaagctctttacttagaagggcatgcttacttgcttctagaacttcaattggttcta 102  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178336 aaattgtacaaggtctttacttagaagggcatgcttacttgcttctagaacttcaattggttcta 5178272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 304
Target Start/End: Complemental strand, 21264853 - 21264718
Alignment:
Q  169 aggaaagcttacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaaga 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | ||| || ||  |  |||||  |||||||||| |||||||||    
T  21264853 aggaaagcttacgaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtcttttgaaaaga 21264754  T
Q  269 acaaaacaactaaaatatgaattcatatggtaaaat 304  Q
    | ||||||| ||||||||  ||| | ||||||||||    
T  21264753 agaaaacaattaaaatatttatttacatggtaaaat 21264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 6835953 - 6836056
Alignment:
Q  183 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 282  Q
    ||||||||||||||||||||||||||||||||||| |||||  | | | || || ||  |||||  |||||||||| |||||||||| ||||||| ||||    
T  6835953 ggtaagggctttttccccatacgttcttactaagtgctagggctttatgattaaataggggtagcaattcttgtcttttgaaaagaagaaaacaattaaa 6836052  T
Q  283 atat 286  Q
    ||||    
T  6836053 atat 6836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 37667136 - 37667081
Alignment:
Q  457 atgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctaactgta 512  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  37667136 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaaaatctgactgta 37667081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 35761999 - 35761944
Alignment:
Q  457 atgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctaactgta 512  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||| | ||||||    
T  35761999 atgaaaatatttcattttggttcatgtggatgatgatgtgttaatatttgactgta 35761944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 8421574 - 8421615
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactagg 223  Q
    ||||||||||||||||||||||||| | |||||||| |||||    
T  8421574 aggtaagggctttttccccatacgtacatactaagtgctagg 8421615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 263 - 512
Target Start/End: Original strand, 536895 - 537136
Alignment:
Q  263 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataa 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  536895 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataa 536994  T
Q  363 tgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaa 462  Q
    |||||||||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536995 tgttatgtggaatggcattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaa 537086  T
Q  463 atatttcagtttggtccatgtggatgatgatatgttaatatctaactgta 512  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  537087 atatttcagtttggtccatgtggatgatgatgtgttaatatctgactgta 537136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 183 - 343
Target Start/End: Original strand, 536731 - 536891
Alignment:
Q  183 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 536830  T
Q  283 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536831 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 178 - 466
Target Start/End: Complemental strand, 4558226 - 4557935
Alignment:
Q  178 tacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaaga-acaaaaca 276  Q
    |||||||||||||||||||||| ||||||   ||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||| |||| | |||| |    
T  4558226 tacgaggtaagggctttttccc-atacgtctatactaagtattaggatgatgttatgatttagaggtagagattcttgtctgttgagaagagagaaaaaa 4558128  T
Q  277 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatg 376  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || || ||||||||| || |||||    
T  4558127 actaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataataatgttacgtagaatg 4558028  T
Q  377 acatttattttatttttctattcatatatgt--ttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 466  Q
    || |||||||||||||  ||| |||||||||  |||||||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||    
T  4558027 acttttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 4557935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 27026621 - 27026708
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 269  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||| || ||  ||||   |||||||||| ||||||||||    
T  27026621 aggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaa 27026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 4557919 - 4557874
Alignment:
Q  457 atgaaaatatttcagtttggtccatgtggatgatgatatgttaata 502  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  4557919 atgaaaatatttcattttggttcatgtggatgatgatatgttaata 4557874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 182 - 411
Target Start/End: Complemental strand, 28969431 - 28969204
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 281  Q
    ||||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||  ||||||||||    
T  28969431 aggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgtctgttgagaagaa--aaacaactaa 28969334  T
Q  282 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatt 381  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||| ||||||||||    
T  28969333 aatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgtagaatgacatt 28969234  T
Q  382 tattttatttttctattcatatatgttttt 411  Q
    ||||||||||| |||| |||||||||||||    
T  28969233 tattttattttgctatgcatatatgttttt 28969204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 215 - 466
Target Start/End: Original strand, 49499045 - 49499297
Alignment:
Q  215 agtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaacctttt 314  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  49499045 agtactaggatcatgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaacctttt 49499144  T
Q  315 ataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatttattttatttttctattcatatatg-tttttgt 413  Q
    |||||| ||||||||||||||||||||||||| |||| || || |  |||||| || |||||||||||||||||||||  ||| |||||||| |||||||    
T  49499145 ataaaaattattagtttaattatattttatataatgtgtgtat-aagatgttacgtagaatgacatttattttattttgatatgcatatatgttttttgt 49499243  T
Q  414 ggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 466  Q
    |||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  49499244 ggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 49499297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 99 - 269
Target Start/End: Original strand, 40458822 - 40458992
Alignment:
Q  99 tctagagcgagagaaattgtgcatgctttgaacctgctaatttagagaaccttgtagtcgtttga-ttgggaggaaagcttacgaggtaagggctttttc 197  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||| | || || ||||||  ||||||||||||||||||    
T  40458822 tctagagcgagagaaatcgtgcatgctttgaacctgcaaaattagaggaccttgtagtcgtttgactaggaagaaaagctctcgaggtaagggctttttc 40458921  T
Q  198 cccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 269  Q
    ||||||||| | |||||||| ||| || | |||||| || || ||||||  |||||||||| || |||||||    
T  40458922 cccatacgtccatactaagtgcta-gactgtgttattaagtagaggtagcaattcttgtcttttaaaaagaa 40458992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 286
Target Start/End: Original strand, 69218 - 69352
Alignment:
Q  149 cttgtagtcgtttgattgggaggaaagcttacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagag 248  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| | ||||||||  ||||| | |||||| || ||  |||||      
T  69218 cttgtagtcgtttgattggaaggaaagcttacgaggtaaggg-ttttttcccatacgtccatactaagtgttaggactgtgttattaaatagtggtagca 69316  T
Q  249 attcttgtctgttgaaaagaacaaaacaactaaaatat 286  Q
    |||||||||| |||||||||  ||||||| ||||||||    
T  69317 attcttgtctcttgaaaaga--aaaacaattaaaatat 69352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 507
Target Start/End: Original strand, 49499313 - 49499363
Alignment:
Q  457 atgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctaa 507  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||| ||||    
T  49499313 atgaaaatatttcattttggttcatgtggatgatgatgtgttaatacctaa 49499363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 180 - 333
Target Start/End: Complemental strand, 32735544 - 32735391
Alignment:
Q  180 cgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 279  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32735544 cgaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 32735445  T
Q  280 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 333  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735444 aaaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 40447350 - 40447508
Alignment:
Q  99 tctagagcgagagaaattgtgcatgctttgaacctgctaatttagagaaccttgtagtcgtttgattgggaggaaagcttacgaggtaagggctttttcc 198  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40447350 tctagagcgagataaattgtccatgctttgaacctgcaaatttagaggaccttgtagtcgtttgattgggaggaaagcttacgaggtaagggctttttcc 40447449  T
Q  199 ccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 258  Q
    |||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  40447450 ccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 40447508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 180 - 349
Target Start/End: Original strand, 1193597 - 1193765
Alignment:
Q  180 cgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 279  Q
    |||||||||||||||||||| ||| ||||||||||||| |||| | | |||||| ||  |  |||||  |||||||||| |||||||||| ||||||| |    
T  1193597 cgaggtaagggctttttccc-ataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtcttttgaaaagaagaaaacaatt 1193695  T
Q  280 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 349  Q
    |||||||  ||| | |||||||| | |||  |||||||| ||| |||| |||||||   |||||||||||    
T  1193696 aaaatatttatttacatggtaaagtctaatattttataagagtgattattttaattgagttttatatgat 1193765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 12775056 - 12774954
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 281  Q
    ||||||||||||||||||||||||| | ||| |||||||||||| ||||| ||||||| | ||| | |||||| ||| ||| |||||  |||||||||||    
T  12775056 aggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaaga--aaaacaactaa 12774959  T
Q  282 aatat 286  Q
    |||||    
T  12774958 aatat 12774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 28267793 - 28267692
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 281  Q
    ||||||||| |||||||| |||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||| ||| |||||||||  |||||||||||    
T  28267793 aggtaagggttttttccc-atacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaaga--aaaacaactaa 28267697  T
Q  282 aatat 286  Q
    |||||    
T  28267696 aatat 28267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 29270702 - 29270792
Alignment:
Q  249 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattt 341  Q
    |||||||||| ||||||||||  |||||| ||||||||| | | | || |||||||||||  |||||||||| |||||| |||||||||||||    
T  29270702 attcttgtcttttgaaaagaa--aaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattatattt 29270792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 227 - 405
Target Start/End: Original strand, 221 - 397
Alignment:
Q  227 atgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttatt 326  Q
    ||||||||||||| || ||||||||||||| |||| |||||||  ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||    
T  221 atgttatgaattagagatagagattcttgtttgttaaaaagaa--aaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttatt 318  T
Q  327 agtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatttattttatttttctattcatatat 405  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||||||| | || |||||||    
T  319 agtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgccatttattttattttgccatgcatatat 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 2720 - 2645
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 257  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||| || ||  |||||| |||||||||    
T  2720 aggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattcttgtc 2645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 22816602 - 22816487
Alignment:
Q  169 aggaaagcttacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaaga 268  Q
    |||||||||  ||||||||||||||||||||||||||||||| ||||||  ||||| | |||||| || ||  ||| |  |||||||||| |||||||||    
T  22816602 aggaaagctctcgaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttgaaaaga 22816503  T
Q  269 acaaaacaactaaaatat 286  Q
      ||||||| ||||||||    
T  22816502 --aaaacaattaaaatat 22816487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 349
Target Start/End: Original strand, 35839168 - 35839268
Alignment:
Q  249 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatga 348  Q
    |||||||||| |||||||||| ||||||| ||||||||  ||| | |||||||||| |||  |||||||| ||| |||| |||||||   ||||||||||    
T  35839168 attcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatga 35839267  T
Q  349 t 349  Q
    |    
T  35839268 t 35839268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 40841652 - 40841568
Alignment:
Q  184 gtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 269  Q
    |||||||||||||||| |||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  40841652 gtaagggctttttccc-atacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 40841568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 20265075 - 20264999
Alignment:
Q  181 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 257  Q
    |||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  20265075 gaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 20264999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 21051704 - 21051628
Alignment:
Q  181 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 257  Q
    |||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  21051704 gaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 21051628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 243287 - 243170
Alignment:
Q  169 aggaaagcttacgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaaga 268  Q
    |||||||||| |||||||| ||| |||||||||||| ||||||||||||  ||||  | |||||| || ||  ||||   |||||||||| |||||||||    
T  243287 aggaaagctttcgaggtaatggcgttttccccatacattcttactaagtgttagggctttgttattaaataggggtatcaattcttgtcttttgaaaaga 243188  T
Q  269 acaaaacaactaaaatat 286  Q
    | ||||||| ||||||||    
T  243187 agaaaacaattaaaatat 243170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 356959 - 356884
Alignment:
Q  182 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 257  Q
    ||||||||  |||||||||||||||||||||||||| ||||||   |||| |||| ||  |||||| |||||||||    
T  356959 aggtaaggattttttccccatacgttcttactaagtgctaggaccgtgttttgaagtagtggtagaaattcttgtc 356884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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