View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1167_low_20 (Length: 254)
Name: NF1167_low_20
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1167_low_20 |
 | |
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| [»] chr3 (26 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 26)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 35 - 254
Target Start/End: Complemental strand, 11160519 - 11160300
Alignment:
| Q |
35 |
tgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggag |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11160519 |
tgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggag |
11160420 |
T |
|
| Q |
135 |
aatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11160419 |
aatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctatagagagatcaattcccaaatgaagatcatgt |
11160320 |
T |
|
| Q |
235 |
gtgatagcttgcaacttttc |
254 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11160319 |
gtgatagcttgcaacttttc |
11160300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 35 - 253
Target Start/End: Original strand, 10888873 - 10889091
Alignment:
| Q |
35 |
tgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggag |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10888873 |
tgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggag |
10888972 |
T |
|
| Q |
135 |
aatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10888973 |
aatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgt |
10889072 |
T |
|
| Q |
235 |
gtgatagcttgcaactttt |
253 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
10889073 |
gtaatagcttgcaactttt |
10889091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 11149361 - 11149153
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11149361 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
11149262 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11149261 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccatctacagagagatcaattcccaaatgaagac |
11149162 |
T |
|
| Q |
230 |
catgtgtga |
238 |
Q |
| |
|
||||||||| |
|
|
| T |
11149161 |
catgtgtga |
11149153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 30 - 254
Target Start/End: Original strand, 8860848 - 8861072
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || ||||| |||||||| ||| | |||||||||| |
|
|
| T |
8860848 |
aatcgtgctgtcaaacaatggcttgatgacttgaaagatgctctctttgatgctgaggatttgctcaaccaaatcagttatgattcattacgatgcaagg |
8860947 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
||||| |||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8860948 |
tggaggatacacaagctgcaaacaaaactaatcaggtgtggaacttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
8861047 |
T |
|
| Q |
230 |
catgtgtgatagcttgcaacttttc |
254 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
8861048 |
catgtgtgatagcttgcaaattttc |
8861072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 11131528 - 11131325
Alignment:
| Q |
35 |
tgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggag |
134 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11131528 |
tgctgtcaaaaaatgggttgatgacttgaaagatgctatctttgatgcggaggatttgctgaatcaaattagttatgagtcactgcgatgcaaggtggag |
11131429 |
T |
|
| Q |
135 |
aatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgt |
234 |
Q |
| |
|
||||||||| | |||||||||||| |||||| |||| ||||||||||||||||||||| | | |||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
11131428 |
aatacacaagctgcaaacaaaactaatcaggtctggaacttcctttcttctccttttaaaaacatctatggagagatcaattcccaaattaagaccatgt |
11131329 |
T |
|
| Q |
235 |
gtga |
238 |
Q |
| |
|
|||| |
|
|
| T |
11131328 |
gtga |
11131325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 10376352 - 10376134
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||| |||| |||||||| || ||||||||||||| |
|
|
| T |
10376352 |
aatccttctgtcaagcaatggcttgatgacttgaaagatgctatctttgatgctgaggacttgctcaatgaaatcagttatgattccctgcgatgcaagg |
10376253 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
|||||||| || || | ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
10376252 |
tggagaatgcaaaagctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggt |
10376153 |
T |
|
| Q |
230 |
catgtgtgatagcttgcaa |
248 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
10376152 |
catgtgtgatagcctgcaa |
10376134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 10434548 - 10434328
Alignment:
| Q |
33 |
cctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtgg |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||| || || |||| |||||||| |
|
|
| T |
10434548 |
cctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatccaaggtgg |
10434449 |
T |
|
| Q |
133 |
agaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcat |
232 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||| || ||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||| |
|
|
| T |
10434448 |
agaatacacatgctcaaaacaaaactaatcaggtgttgaacttcctttcatctccttttaatagtttctacagagagatcaattctcaaatgaagatcat |
10434349 |
T |
|
| Q |
233 |
gtgtgatagcttgcaactttt |
253 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
10434348 |
gtgtgaaagcttgcaactttt |
10434328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 10580163 - 10580371
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||| ||| |||| ||||| || || ||||||||||||| |
|
|
| T |
10580163 |
aatcctgctgtcaaactatggcttgatgacttgaaagatgctatcattgatgctgaggacttgctcaatgaaatcagttacgattccctgcgatgcaagg |
10580262 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||| |||||||| |
|
|
| T |
10580263 |
tggagaatacacaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctccttttaatagcttctatagagagatcaattcccagatgaagat |
10580362 |
T |
|
| Q |
230 |
catgtgtga |
238 |
Q |
| |
|
||||||||| |
|
|
| T |
10580363 |
catgtgtga |
10580371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 252
Target Start/End: Original strand, 9838431 - 9838645
Alignment:
| Q |
38 |
tgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaat |
137 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||| || |||| ||||| || || ||||||||||||||||||||| |
|
|
| T |
9838431 |
tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaat |
9838530 |
T |
|
| Q |
138 |
acacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtg |
237 |
Q |
| |
|
|| || | ||||||||||| ||||||||||| ||||||||||||||||||||| | || |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
9838531 |
gcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtg |
9838630 |
T |
|
| Q |
238 |
atagcttgcaacttt |
252 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9838631 |
atagcttgcaacttt |
9838645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 252
Target Start/End: Original strand, 9849309 - 9849523
Alignment:
| Q |
38 |
tgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaat |
137 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||| || |||| ||||| || || ||||||||||||||||||||| |
|
|
| T |
9849309 |
tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaat |
9849408 |
T |
|
| Q |
138 |
acacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtg |
237 |
Q |
| |
|
|| || | ||||||||||| ||||||||||| ||||||||||||||||||||| | || |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
9849409 |
gcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtg |
9849508 |
T |
|
| Q |
238 |
atagcttgcaacttt |
252 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9849509 |
atagcttgcaacttt |
9849523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 10088352 - 10088570
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| | |||| |||||||| || || |||||||||| |
|
|
| T |
10088352 |
aatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgctcagcgaaatcagttatgattcccttcgatgcaagg |
10088451 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
|||||||| ||||| | |||||||| | ||||||| || ||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10088452 |
tggagaatgcacaagctcaaaacaaaagttatcaggtgatgaacttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagat |
10088551 |
T |
|
| Q |
230 |
catgtgtgatagcttgcaa |
248 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
10088552 |
catgtgtgaaagcttgcaa |
10088570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 248
Target Start/End: Original strand, 10076836 - 10077046
Alignment:
| Q |
38 |
tgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaat |
137 |
Q |
| |
|
||||| ||| ||||||||| ||||||||||||||||||||||||||||||| ||||| || |||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
10076836 |
tgtcagacagtggcttgataacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttacgattcactgcgatgcaaggtggagaat |
10076935 |
T |
|
| Q |
138 |
acacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtg |
237 |
Q |
| |
|
||||| | ||||||||||| |||||||| || ||||||||| ||||||||||| | |||||||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
10076936 |
gcacaagctcaaaacaaaactaatcaggtgttgaacttcctttcatctccttttaatagcttctacaaagagatcaattctcaaacgaagatcatgtgtg |
10077035 |
T |
|
| Q |
238 |
atagcttgcaa |
248 |
Q |
| |
|
| || |||||| |
|
|
| T |
10077036 |
aaaggttgcaa |
10077046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 10195235 - 10195453
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| | | |||| |||||||| || || |||||||||| |
|
|
| T |
10195235 |
aatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgttcagcgaaatcagttatgattcccttcgatgcaagg |
10195334 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
|||||||| ||||| | |||||||| | ||||||| || ||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10195335 |
tggagaatgcacaagctcaaaacaaaagttatcaggtgatgaacttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagat |
10195434 |
T |
|
| Q |
230 |
catgtgtgatagcttgcaa |
248 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
10195435 |
catgtgtgaaagcttgcaa |
10195453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 11768796 - 11769019
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| || ||||||| |||||||| || || ||||||||| |
|
|
| T |
11768796 |
aatcttgctgtcaaacaatggcttgatgacttgaaagacgctatctttgatgctgaggatttactcgatcaaataagttatgactccctccgatgcaaga |
11768895 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
||||||| | |||| | | ||||||||||| ||||||||||| ||| ||||| || |||||||| | | |||| |||||||||||||||| |||||||| |
|
|
| T |
11768896 |
tggagaagaaacaagctagaaacaaaactaatcaggtgtggaacttactttcatccccttttaaaaacatctatggagagatcaattcccatatgaagat |
11768995 |
T |
|
| Q |
230 |
catgtgtgatagcttgcaactttt |
253 |
Q |
| |
|
||||||||| ||| |||||||||| |
|
|
| T |
11768996 |
catgtgtgaaagcctgcaactttt |
11769019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 10364305 - 10364086
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||| || |||||||||| |
|
|
| T |
10364305 |
aatcctgctgtcaaacaatggcttgatggcttgaaagatgctgtctttgatgccgaggatttgcttcacgaaatcagttatgattccctgcgatgcacaa |
10364206 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
|||||| || |||| | ||||| || || ||||||||||| |||||||| |||||||| || | |||||| ||||||||||||||||| |||||||| |
|
|
| T |
10364205 |
tggagagtaaacaagctggaaacagaagtaatcaggtgtggaacttccttttatctcctttcaatagcttctatagagagatcaattcccagatgaagat |
10364106 |
T |
|
| Q |
230 |
catgtgtgatagcttgcaac |
249 |
Q |
| |
|
||||||||| ||| |||||| |
|
|
| T |
10364105 |
catgtgtgaaagcctgcaac |
10364086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 13289231 - 13289433
Alignment:
| Q |
34 |
ctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtgga |
133 |
Q |
| |
|
||||||||||||||||| | ||| | |||||||||| ||| |||||| ||||||||||| || ||||| | ||| || || |||||||| |||||||| |
|
|
| T |
13289231 |
ctgctgtcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtgga |
13289330 |
T |
|
| Q |
134 |
gaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatg |
233 |
Q |
| |
|
||| | |||| | ||||| |||| |||||| |||| | || |||| ||||||||||| || |||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
13289331 |
gaagaaacaagctgaaaacatgactaatcaggtttggaacctcttttcatctccttttaaaactctctatggagagatcaattcacaaatgaagattatg |
13289430 |
T |
|
| Q |
234 |
tgt |
236 |
Q |
| |
|
||| |
|
|
| T |
13289431 |
tgt |
13289433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 253
Target Start/End: Original strand, 13332470 - 13332689
Alignment:
| Q |
34 |
ctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtgga |
133 |
Q |
| |
|
||||||||||||||||| | ||| | |||||||||| ||| |||||| ||||||||||| || ||||| | ||| || || |||||||| |||||||| |
|
|
| T |
13332470 |
ctgctgtcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtgga |
13332569 |
T |
|
| Q |
134 |
gaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatg |
233 |
Q |
| |
|
||| | |||| | ||||| |||| |||||| |||| | || |||| ||||||||||| | |||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
13332570 |
gaagaaacaagctgaaaacatgactaatcaggtttggaacctcttttcgtctccttttaaaaatctctatggagagatcaattcacaaatgaagattatg |
13332669 |
T |
|
| Q |
234 |
tgtgatagcttgcaactttt |
253 |
Q |
| |
|
||| | || |||||||||| |
|
|
| T |
13332670 |
tgtcaaaggctgcaactttt |
13332689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 253
Target Start/End: Original strand, 13160546 - 13160765
Alignment:
| Q |
34 |
ctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtgga |
133 |
Q |
| |
|
||||||||||||||||| | ||| | |||||||||| ||| |||||| ||||||||||| || ||||| | ||| || || |||||||| | |||||| |
|
|
| T |
13160546 |
ctgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtgga |
13160645 |
T |
|
| Q |
134 |
gaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatg |
233 |
Q |
| |
|
||| | |||| | ||||| |||| |||||| |||| | || |||| ||||||||||| | |||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
13160646 |
gaagaaacaagctgaaaacatgactaatcaggtttggaacctcttttcatctccttttaaaaatctctatggagagatcaattcacaaatgaagattatg |
13160745 |
T |
|
| Q |
234 |
tgtgatagcttgcaactttt |
253 |
Q |
| |
|
||| | || |||||||||| |
|
|
| T |
13160746 |
tgtcaaaggctgcaactttt |
13160765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 253
Target Start/End: Original strand, 13170597 - 13170816
Alignment:
| Q |
34 |
ctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtgga |
133 |
Q |
| |
|
||||||||||||||||| | ||| | |||||||||| ||| |||||| ||||||||||| || ||||| | ||| || || || ||||| |||||||| |
|
|
| T |
13170597 |
ctgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtgga |
13170696 |
T |
|
| Q |
134 |
gaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatg |
233 |
Q |
| |
|
||| | |||||| ||||| |||| |||||| |||| | || |||| | ||||||||| | |||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
13170697 |
gaagatacaatctgaaaacatgactaatcaggtttggaacctcttttcatgtccttttaaaaatctctatggagagatcaattcacaaatgaagattatg |
13170796 |
T |
|
| Q |
234 |
tgtgatagcttgcaactttt |
253 |
Q |
| |
|
||| | || |||||||||| |
|
|
| T |
13170797 |
tgtcaaaggctgcaactttt |
13170816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 10517057 - 10517114
Alignment:
| Q |
37 |
ctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgct |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| | || |||||||| |
|
|
| T |
10517057 |
ctgtcaaacaatggcttgatgacttgaaagatgcaatctttgattctgaagatttgct |
10517114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 10541543 - 10541600
Alignment:
| Q |
37 |
ctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgct |
94 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
10541543 |
ctgtcaagcaatggcttgatgacttgaaagatgcaatctttgatgctgaagatttgct |
10541600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 11782479 - 11782422
Alignment:
| Q |
37 |
ctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgct |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| || |||||||| |
|
|
| T |
11782479 |
ctgtcaaacaatggcttgatgacttgaaagatgcaatatttgatgctgaagatttgct |
11782422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 10500146 - 10500203
Alignment:
| Q |
37 |
ctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgct |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||| || |||||||| |
|
|
| T |
10500146 |
ctgtcaaacaatggcttgatgacttgaaagacacaatctttgatgctgaagatttgct |
10500203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 10526928 - 10526985
Alignment:
| Q |
37 |
ctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgct |
94 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | |||||||| || |||||||| |
|
|
| T |
10526928 |
ctgtcaaacaatggcttcatgacttgaaagatgcaatatttgatgctgaagatttgct |
10526985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 10085678 - 10085734
Alignment:
| Q |
38 |
tgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgct |
94 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| | |||||||||| || |||||||| |
|
|
| T |
10085678 |
tgtcaaacagtggcttgataacttgaaagatgttttctttgatgctgaagatttgct |
10085734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 10192598 - 10192654
Alignment:
| Q |
38 |
tgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgct |
94 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| | |||||||||| || |||||||| |
|
|
| T |
10192598 |
tgtcaaacagtggcttgataacttgaaagatgttttctttgatgctgaagatttgct |
10192654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 26906459 - 26906677
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| || ||||||||||||| || ||||||||||| | |
|
|
| T |
26906459 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttgatgttgaggacttgctcaacgaaattagttatgattccctgcgatgcaaag |
26906558 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
| |||||||||||| | ||||||||||| |||||||| || ||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
26906559 |
tcgagaatacacaagctcaaaacaaaactaatcaggtgttgaacttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagat |
26906658 |
T |
|
| Q |
230 |
catgtgtgatagcttgcaa |
248 |
Q |
| |
|
|||||||| ||| ||||| |
|
|
| T |
26906659 |
aatgtgtgaaagcctgcaa |
26906677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 44958209 - 44958008
Alignment:
| Q |
37 |
ctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaa |
136 |
Q |
| |
|
||||||||||||||||||||||||||||| || | | |||||||||||||||||||| || |||||||| ||||| || ||||| ||||| |||||||| |
|
|
| T |
44958209 |
ctgtcaaacaatggcttgatgacttgaaaaatacaatatttgatgccgaggatttgctcaaccaaattagctatgattccctgcgttgcaaagtggagaa |
44958110 |
T |
|
| Q |
137 |
tacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgt |
236 |
Q |
| |
|
||||||| | |||||||||| |||||| |||| ||||||||| ||||||||||| | |||||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
44958109 |
tacacaagttgccaacaaaactaatcaggtctggaacttcctttcatctccttttaaaaacttctatggagagatcaattctcaaatgaagattatgtgt |
44958010 |
T |
|
| Q |
237 |
ga |
238 |
Q |
| |
|
|| |
|
|
| T |
44958009 |
ga |
44958008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 11484589 - 11484685
Alignment:
| Q |
40 |
tcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaa |
136 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||| |||| || ||||| | ||||||||||||| ||||| |
|
|
| T |
11484589 |
tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgcttaatgaaatcagctatgatgccttgcgatgcaaggtagagaa |
11484685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 50312 - 50092
Alignment:
| Q |
30 |
aatcctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaagg |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| | |||| |||||||| || ||||||||||||| |
|
|
| T |
50312 |
aatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgctcagcgaaatcagttatgattccctgcgatgcaagg |
50213 |
T |
|
| Q |
130 |
tggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagat |
229 |
Q |
| |
|
|||||||| || || | || ||||| | ||||||| || |||| |||| ||| ||||||| | ||| |||||||||||||||| |||||||| |
|
|
| T |
50212 |
tggagaatgcaaaagctcaaagcaaaatttatcaggtgatgaacttcttttcatcttcttttaaaa---actatggagagatcaattcccagatgaagat |
50116 |
T |
|
| Q |
230 |
catgtgtgatagcttgcaactttt |
253 |
Q |
| |
|
||||||||| ||| |||||||||| |
|
|
| T |
50115 |
catgtgtgaaagcctgcaactttt |
50092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 253
Target Start/End: Complemental strand, 136391 - 136172
Alignment:
| Q |
34 |
ctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtgga |
133 |
Q |
| |
|
||||||||||||||||| | ||| | |||||||||| ||| |||||| ||||||||||| || ||||| | ||| || || || ||||| |||||||| |
|
|
| T |
136391 |
ctgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtgga |
136292 |
T |
|
| Q |
134 |
gaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatg |
233 |
Q |
| |
|
||| | |||||| ||||| |||| |||||| |||| | || |||| | ||||||||| | |||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
136291 |
gaagatacaatctgaaaacatgactaatcaggtttggaacctcttttcatgtccttttaaaaatctctatggagagatcaattcacaaatgaagattatg |
136192 |
T |
|
| Q |
234 |
tgtgatagcttgcaactttt |
253 |
Q |
| |
|
||| | || |||||||||| |
|
|
| T |
136191 |
tgtcaaaggctgcaactttt |
136172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 253
Target Start/End: Complemental strand, 146442 - 146223
Alignment:
| Q |
34 |
ctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtgga |
133 |
Q |
| |
|
||||||||||||||||| | ||| | |||||||||| ||| |||||| ||||||||||| || ||||| | ||| || || |||||||| | |||||| |
|
|
| T |
146442 |
ctgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtgga |
146343 |
T |
|
| Q |
134 |
gaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatg |
233 |
Q |
| |
|
||| | |||| | ||||| |||| |||||| |||| | || |||| ||||||||||| | |||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
146342 |
gaagaaacaagctgaaaacatgactaatcaggtttggaacctcttttcatctccttttaaaaatctctatggagagatcaattcacaaatgaagattatg |
146243 |
T |
|
| Q |
234 |
tgtgatagcttgcaactttt |
253 |
Q |
| |
|
||| | || |||||||||| |
|
|
| T |
146242 |
tgtcaaaggctgcaactttt |
146223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 31680239 - 31680042
Alignment:
| Q |
37 |
ctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggag-- |
134 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | | |||||| ||||||||||| || || || |||||||| | || || ||||||||||| |
|
|
| T |
31680239 |
ctgtcaaacaatggcttgatgagttgaaagatgcaatatatgatgctgaggatttgctcaaccagatcagttatgattgccttagaagcaaggtggagaa |
31680140 |
T |
|
| Q |
135 |
----aatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaaga |
228 |
Q |
| |
|
||||||||| | ||||| ||| ||||||| |||| |||||||| ||||||||| | | ||| || |||||||||||||||||||||||| |
|
|
| T |
31680139 |
tagtaatacacaagctgaaaacatcactggtcaggtttggaatttcctttcatctccttttcaaaacttgtatggagagatcaattcccaaatgaaga |
31680042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 17853420 - 17853378
Alignment:
| Q |
37 |
ctgtcaaacaatggcttgatgacttgaaagatgctgtctttga |
79 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
17853420 |
ctgtcaaacaatggcttgatgatttgaaagacgctatctttga |
17853378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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