View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_low_3 (Length: 511)

Name: NF1167_low_3
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_low_3
NF1167_low_3
[»] chr4 (5 HSPs)
chr4 (28-214)||(5663565-5663751)
chr4 (303-419)||(16927148-16927264)
chr4 (445-494)||(26063354-26063403)
chr4 (319-384)||(36312202-36312267)
chr4 (319-384)||(36326411-36326476)
[»] chr3 (3 HSPs)
chr3 (285-494)||(18552512-18552718)
chr3 (306-419)||(35365985-35366097)
chr3 (323-415)||(47411802-47411894)
[»] chr5 (3 HSPs)
chr5 (282-492)||(13371596-13371803)
chr5 (324-391)||(31216376-31216443)
chr5 (304-419)||(23993555-23993673)
[»] chr7 (2 HSPs)
chr7 (274-419)||(2719152-2719296)
chr7 (280-454)||(32972808-32972986)
[»] chr1 (2 HSPs)
chr1 (297-418)||(21152864-21152985)
chr1 (274-341)||(14546877-14546944)
[»] chr6 (1 HSPs)
chr6 (306-419)||(7769926-7770039)
[»] chr2 (1 HSPs)
chr2 (113-160)||(31974466-31974513)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 5663751 - 5663565
Alignment:
Q  28 caatttttggccacacaaagaccactccttgcactatgcttgcatgtaccattaatctgcaatcaaccaacaatgcatatggagttatccaatgttgaag 127  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||||    
T  5663751 caatttttggccacacaaggaccactccttgcactatgcttgcatgtaccatttttcttcaatcaaccaacaatgcacatggagttatccaatgttgaag 5663652  T
Q  128 gagtagtagaattgttggcaataaaaggaggtttgaatatcattttctatccatttaacgtaagtataaaaacatccatcattctat 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  5663651 gagtagtagaattgttggcaataaaaggaggttcgaatatcattttctctccatttaacaaaagtataaaaacatccatcattctat 5663565  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 16927148 - 16927264
Alignment:
Q  303 catacattcaatatgctagggctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactagatcttcattgatattcaa 402  Q
    ||||||||||| ||||||| ||||||||||||||||||||| | |||   ||||||||  ||| |||  ||||||| ||||||| ||||||||||||| |    
T  16927148 catacattcaagatgctagtgctagtagtcaatcataaacaaacaaacatcattaaacataagtaaacatgaataaaactagattttcattgatattcta 16927247  T
Q  403 gagagttcatacaaatt 419  Q
    | |||||||||||||||    
T  16927248 gggagttcatacaaatt 16927264  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Original strand, 26063354 - 26063403
Alignment:
Q  445 agattcatctcaggcttaactacaatgaaattaattactcatatctaaag 494  Q
    ||||||||||||| || ||| |||| ||||||| ||||||||||||||||    
T  26063354 agattcatctcagtctcaaccacaaagaaattagttactcatatctaaag 26063403  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 36312202 - 36312267
Alignment:
Q  319 tagggctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactag 384  Q
    ||||| || |||||| ||||||||||||||||| ||||| ||||||| |||| | ||||| |||||    
T  36312202 tagggttaatagtcattcataaacatataaaaggcattacactcaagcaaatataaataaaactag 36312267  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 36326411 - 36326476
Alignment:
Q  319 tagggctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactag 384  Q
    ||||| || |||||| ||||||||||||||||| ||||| ||||||| |||| | ||||| |||||    
T  36326411 tagggttaatagtcattcataaacatataaaaggcattacactcaagcaaatataaataaaactag 36326476  T

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Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 285 - 494
Target Start/End: Complemental strand, 18552718 - 18552512
Alignment:
Q  285 caaagtctatagtcaattcatacattcaatatgctagggctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactag 384  Q
    ||||||||||| |||||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||     
T  18552718 caaagtctataatcaattcatatattcaaaatactagggctagtactcaatcataaacatataaaagacattaaagtcaaggaaatctaaataagactat 18552619  T
Q  385 atcttcattgatattcaagagagttcatacaaatttacatggtcatatatagcttacaaaagattcatctcaggcttaactacaatgaaattaattactc 484  Q
    ||||||||||||||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18552618 atcttcattgatattcaagagagttcatacaaa-ttacatggcc--atatagcttacaaaagattcatctcaggcttaactacaatgaaattagttactc 18552522  T
Q  485 atatctaaag 494  Q
    ||| ||||||    
T  18552521 atagctaaag 18552512  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 419
Target Start/End: Complemental strand, 35366097 - 35365985
Alignment:
Q  306 acattcaatatgctagggctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactagatcttcattgatattcaagag 405  Q
    |||||||  ||||||| ||||||||||||| ||||||||| || | ||||||||| ||||| ||| ||||| | |||||   |||||| |||||||||||    
T  35366097 acattcacgatgctagtgctagtagtcaataataaacataaaaca-acattaaacacaaggtaatatgaattaaactagtctttcattaatattcaagag 35365999  T
Q  406 agttcatacaaatt 419  Q
    ||||||||||||||    
T  35365998 agttcatacaaatt 35365985  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 47411894 - 47411802
Alignment:
Q  323 gctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactagatcttcattgatattcaagagagttcataca 415  Q
    ||||||||||||| ||||||||| |||  ||||||||| ||||| ||| ||||| | ||||||  |||||||||||||||| |||||||||||    
T  47411894 gctagtagtcaataataaacatacaaacaacattaaacacaaggtaatatgaattaaactagactttcattgatattcaagggagttcataca 47411802  T

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Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 282 - 492
Target Start/End: Complemental strand, 13371803 - 13371596
Alignment:
Q  282 attcaaagtctatagtcaattcatacattcaatatgctagggctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagac 381  Q
    |||||| ||||||  |||||||||||| | || | ||||||||||||||| ||||||||||||||| ||| ||||| | ||||||||||||||| |||||    
T  13371803 attcaatgtctatgatcaattcatacagttaagaagctagggctagtagttaatcataaacatatataaggcattacattcaaggaaatctgaacaagac 13371704  T
Q  382 tagatcttcattgatattcaagagagttcatacaaatttacatggtcatatatagcttacaaaagattcatctcaggcttaactacaatgaaattaatta 481  Q
    |||||||||| ||||||||||||  || |||||||| ||||||||||  ||||||||||||||||||||||| |||||||||| |||| ||||||| |||    
T  13371703 tagatcttcaatgatattcaagaatgtccatacaaa-ttacatggtc--atatagcttacaaaagattcatcgcaggcttaaccacaaggaaattagtta 13371607  T
Q  482 ctcatatctaa 492  Q
    |||||| ||||    
T  13371606 ctcataactaa 13371596  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 31216376 - 31216443
Alignment:
Q  324 ctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactagatcttca 391  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  31216376 ctagtattcaatcataaacatataaaagacattaaaatcaaggaaatatgaataaaactagatcttca 31216443  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 304 - 419
Target Start/End: Original strand, 23993555 - 23993673
Alignment:
Q  304 atacattcaatatgctagggctagt---agtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactagatcttcattgatattc 400  Q
    |||||||||| ||||||| ||||||   ||||||||||||||||| |||  |||||||||  |||||||| ||||||| |||| || || ||||| ||||    
T  23993555 atacattcaagatgctagtgctagtagtagtcaatcataaacatacaaacaacattaaacataaggaaatatgaataaaactatatttttattgagattc 23993654  T
Q  401 aagagagttcatacaaatt 419  Q
    ||| |||||||||||||||    
T  23993655 aagggagttcatacaaatt 23993673  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 419
Target Start/End: Complemental strand, 2719296 - 2719152
Alignment:
Q  274 tagtagtcattcaaagtctatagtcaattcatacattcaatatgctagggctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctg 373  Q
    ||||||||||||||| |||||  ||||||||||||||||| |||  ||||||| |||||||||| ||||||||||||   ||||||||||||  || |||    
T  2719296 tagtagtcattcaaattctatgatcaattcatacattcaagatgtcagggctaatagtcaatcagaaacatataaaaagtattaaactcaagataaactg 2719197  T
Q  374 aataagactagatcttcattgatattcaagagagttcatacaaatt 419  Q
    |||||||||| ||||||||||||| || ||| ||||||||||||||    
T  2719196 aataagacta-atcttcattgataatctagacagttcatacaaatt 2719152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 32972808 - 32972986
Alignment:
Q  280 tcattcaaagtctatagtcaattcatacattcaatatgctagggctagtagtcaat-------cataaacatataaaagacattaaactcaaggaaatct 372  Q
    ||||||||| |||||  |||||||||| |||||| ||||||||| ||||||||| |       |||||||||||||||  |||||||||||||  || |     
T  32972808 tcattcaaattctatgatcaattcataaattcaagatgctagggttagtagtcactagtcagtcataaacatataaaaagcattaaactcaagataaaca 32972907  T
Q  373 gaataagactagatcttcattgatattcaagagagttcatacaaatttacatggtcatatatagcttacaaaagattcatct 454  Q
     |||||||||||||||||| ||||| |||||||||||||| ||||  |||| || |  ||||||||| ||||||||||||||    
T  32972908 aaataagactagatcttcaatgataatcaagagagttcatgcaaa-gtacaaggcc--atatagctttcaaaagattcatct 32972986  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 297 - 418
Target Start/End: Complemental strand, 21152985 - 21152864
Alignment:
Q  297 tcaattcatacattcaatatgctagggctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactagatcttcattgat 396  Q
    |||||| | |||||||| ||||||| |||||||||||||||||||||||||||  |||||||||  |||||||| ||||| | ||||||  |||||||||    
T  21152985 tcaatttacacattcaagatgctagtgctagtagtcaatcataaacatataaacaacattaaacagaaggaaatatgaattaaactagactttcattgat 21152886  T
Q  397 attcaagagagttcatacaaat 418  Q
    ||||||| ||||||||||||||    
T  21152885 attcaagggagttcatacaaat 21152864  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 14546877 - 14546944
Alignment:
Q  274 tagtagtcattcaaagtctatagtcaattcatacattcaatatgctagggctagtagtcaatcataaa 341  Q
    ||||| |||||||||||||||| || ||||||| |||||||| | |||||||||||||||||| ||||    
T  14546877 tagtaatcattcaaagtctataatcgattcatatattcaataagttagggctagtagtcaatcgtaaa 14546944  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 306 - 419
Target Start/End: Original strand, 7769926 - 7770039
Alignment:
Q  306 acattcaatatgctagggctagtagtcaatcataaacatataaaagacattaaactcaaggaaatctgaataagactagatcttcattgatattcaagag 405  Q
    |||||||| ||||||| ||||||||| ||||||||||||| | | | |||||||| ||||||||| ||||| | ||||||  |||||||||||||||| |    
T  7769926 acattcaagatgctagtgctagtagttaatcataaacatacatatgtcattaaacacaaggaaatatgaattaaactagactttcattgatattcaaggg 7770025  T
Q  406 agttcatacaaatt 419  Q
    ||||||||||||||    
T  7770026 agttcatacaaatt 7770039  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 31974513 - 31974466
Alignment:
Q  113 tatccaatgttgaaggagtagtagaattgttggcaataaaaggaggtt 160  Q
    ||||||||||||||||| |||| ||||| || ||||||||||||||||    
T  31974513 tatccaatgttgaaggaatagttgaattatttgcaataaaaggaggtt 31974466  T

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