View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_low_4 (Length: 498)

Name: NF1167_low_4
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_low_4
NF1167_low_4
[»] chr4 (4 HSPs)
chr4 (129-276)||(3427481-3427628)
chr4 (23-117)||(3427402-3427491)
chr4 (123-183)||(8340296-8340356)
chr4 (361-404)||(3427713-3427756)
[»] chr1 (3 HSPs)
chr1 (98-247)||(47509200-47509348)
chr1 (107-172)||(42884732-42884797)
chr1 (60-108)||(23884745-23884792)
[»] chr5 (1 HSPs)
chr5 (126-179)||(34404259-34404312)
[»] chr7 (2 HSPs)
chr7 (129-163)||(7871188-7871222)
chr7 (137-186)||(42372783-42372832)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 3427481 - 3427628
Alignment:
Q  129 ccaaaacttaaaagctaaaatcaatttcaatttcaatatagtaatcaaaattgagccaagattgggagtttatagaaaagaaggnnnnnnngagatgacc 228  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||    
T  3427481 ccaaaacctaaaagctaaaatcaatttcaatttcaatatagtaatcaaaattgagccaaaattgggagtttatagaaaagaaggaaaaaaagagatgacc 3427580  T
Q  229 taaaatagagatgttggtgttgtggtgatgtgctggttctgttctgca 276  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  3427581 taacatagagatgttggtgttgtggtgatgtgctggttctgttatgca 3427628  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 3427402 - 3427491
Alignment:
Q  23 cacagagctataataacatattttggagtacatacatgaaaatagtggttacactcataaaattagttgtaataaaacaaaattccaaaacctaa 117  Q
    |||||||||||||||||||||||||||||| |||  ||    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3427402 cacagagctataataacatattttggagta-atag-tgt---tagtggttacacttataaaattagttgtaataaaacaaaattccaaaacctaa 3427491  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 8340356 - 8340296
Alignment:
Q  123 ttttagccaaaacttaaaagctaaaatcaatttcaatttcaatatagtaatcaaaattgag 183  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  8340356 ttttagccaaaacctaaaagctaaagtcaatttcaattttaatatagtaaccaaaattgag 8340296  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 404
Target Start/End: Original strand, 3427713 - 3427756
Alignment:
Q  361 tcagtttgtgttgtgcgtgtgtgtagtgagatagaagagggaag 404  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  3427713 tcagtttgtgttgtgcgtgtgtgtagtgagatagaagatggaag 3427756  T

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Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 47509200 - 47509348
Alignment:
Q  98 aacaaaattccaaaacctaatgatattttagccaaaacttaaaagctaaaatcaatttcaatttcaatatagtaatcaaaattgagccaagattgggagt 197  Q
    |||||||||||||| |||||||||||| |||| ||||| ||||| ||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  47509200 aacaaaattccaaaccctaatgatattatagcgaaaacctaaaatctaaaat-aatttcaattttaatatagtaatcaaaatagagccaaaattgggagt 47509298  T
Q  198 ttatagaaaagaaggnnnnnnngagatgacctaaaatagagatgttggtg 247  Q
    ||||| |||||||||       ||||||||||||||||||||||||||||    
T  47509299 ttataaaaaagaaggaaaaagtgagatgacctaaaatagagatgttggtg 47509348  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 42884797 - 42884732
Alignment:
Q  107 ccaaaacctaatgatattttagccaaaacttaaaagctaaaatcaatttcaatttcaatatagtaa 172  Q
    ||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||| | ||||||    
T  42884797 ccaaaacctaatgatgttgtagcaaaaacctaaaagctaaaatcaatttcaatttcagtgtagtaa 42884732  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 23884792 - 23884745
Alignment:
Q  60 gaaaatagtggttacactcataaaattagttgtaataaaacaaaattcc 108  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  23884792 gaaaatagtggttacactcat-aaattagttgtgataaaacaaaattcc 23884745  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 34404312 - 34404259
Alignment:
Q  126 tagccaaaacttaaaagctaaaatcaatttcaatttcaatatagtaatcaaaat 179  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||| ||||||    
T  34404312 tagccaaaatctaaaagctaaaatcaatttcaatttaaatatagtaaccaaaat 34404259  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 7871188 - 7871222
Alignment:
Q  129 ccaaaacttaaaagctaaaatcaatttcaatttca 163  Q
    ||||||| |||||||||||||||||||||||||||    
T  7871188 ccaaaacctaaaagctaaaatcaatttcaatttca 7871222  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 42372783 - 42372832
Alignment:
Q  137 taaaagctaaaatcaatttcaatttcaatatagtaatcaaaattgagcca 186  Q
    ||||||||||||||| ||||||||||| ||| || | |||||||||||||    
T  42372783 taaaagctaaaatcagtttcaatttcagtattgtgaccaaaattgagcca 42372832  T

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