View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1167_low_6 (Length: 454)

Name: NF1167_low_6
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1167_low_6
NF1167_low_6
[»] chr7 (3 HSPs)
chr7 (216-311)||(31112617-31112712)
chr7 (16-113)||(31112418-31112515)
chr7 (378-425)||(31112778-31112825)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 31112617 - 31112712
Alignment:
Q  216 tttgagatgctcaaatataagagttgttattgaaaacttaaaaaacaccgtaagatttctcaatagatttttggcagtgatatcatgtatatttaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31112617 tttgagatgctcaaatataagagttgttattgaaaacttaaaaaacaccgtaagatttctcaatagatttttggcagtgatatcatgtatatttaa 31112712  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 31112418 - 31112515
Alignment:
Q  16 atagcaatcatgtagacaaagctatgcgattattcgattgagtacgaacgatccagagttcaaagtcaataattctaagttacgaaaatacctccttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31112418 atagcaatcatgtagacaaagctatgcgattattcgattgagtacgaacgatccagagttcaaagtcaataattctaagttacgaaaatacttccttc 31112515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 425
Target Start/End: Original strand, 31112778 - 31112825
Alignment:
Q  378 tagggaacctttagctcatttaatcatttcattctttaactacactac 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31112778 tagggaacctttagctcatttaatcatttcattctttaactacactac 31112825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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