View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1167_low_7 (Length: 421)
Name: NF1167_low_7
Description: NF1167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1167_low_7 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 94 - 407
Target Start/End: Complemental strand, 24495415 - 24495102
Alignment:
| Q |
94 |
gaataatgatgtgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttc |
193 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24495415 |
gaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataattgcttc |
24495316 |
T |
|
| Q |
194 |
ctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatactagtatct |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495315 |
ctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatactagtatct |
24495216 |
T |
|
| Q |
294 |
cttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttg |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495215 |
cttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttg |
24495116 |
T |
|
| Q |
394 |
cctagacacaggtt |
407 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
24495115 |
cctagacagaggtt |
24495102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 94 - 328
Target Start/End: Complemental strand, 24491857 - 24491623
Alignment:
| Q |
94 |
gaataatgatgtgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttc |
193 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24491857 |
gaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataattgcttc |
24491758 |
T |
|
| Q |
194 |
ctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatactagtatct |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24491757 |
ctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatactagtatct |
24491658 |
T |
|
| Q |
294 |
cttaatttaaaagccttggtcctgtaaccttaaca |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24491657 |
cttaatttaaaagccttggtcctgtaaccttaaca |
24491623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 136 - 281
Target Start/End: Complemental strand, 2810371 - 2810226
Alignment:
| Q |
136 |
tcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtga |
235 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2810371 |
tcacaaggtatattggtacaatatatagaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtga |
2810272 |
T |
|
| Q |
236 |
tattatttcttgatcacagaataactctcatcttaaatgcttaata |
281 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
2810271 |
tattatttcttaatcacagaataactctcgtctaaaatgcttaata |
2810226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 2810071 - 2810031
Alignment:
| Q |
289 |
tatctcttaatttaaaagccttggtcctgtaaccttaacac |
329 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2810071 |
tatctcttaatttaaaagccttggtcttgtaaccttaacac |
2810031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 94 - 407
Target Start/End: Original strand, 18556579 - 18556890
Alignment:
| Q |
94 |
gaataatgatgtgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttc |
193 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18556579 |
gaataatgatatgtatggaataatgatttt-tgctatatcattcacaaggtatattggtacaatatatagaaacatatttgctgtcctaataattgcttc |
18556677 |
T |
|
| Q |
194 |
ctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatactagtatct |
293 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
18556678 |
ctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatacta-gaatatct |
18556776 |
T |
|
| Q |
294 |
cttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttg |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18556777 |
cttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcatatacgcctatcttgaaacgaagatcttgatgacgttg |
18556876 |
T |
|
| Q |
394 |
cctagacacaggtt |
407 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
18556877 |
cctagacagaggtt |
18556890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 94 - 328
Target Start/End: Complemental strand, 24359170 - 24358936
Alignment:
| Q |
94 |
gaataatgatgtgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttc |
193 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24359170 |
gaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataattgcttc |
24359071 |
T |
|
| Q |
194 |
ctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatactagtatct |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24359070 |
ctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatactagtatct |
24358971 |
T |
|
| Q |
294 |
cttaatttaaaagccttggtcctgtaaccttaaca |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24358970 |
cttaatttaaaagccttggtcctgtaaccttaaca |
24358936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 94 - 313
Target Start/End: Complemental strand, 86915 - 86693
Alignment:
| Q |
94 |
gaataatgatgtgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttc |
193 |
Q |
| |
|
|||||||||| | |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86915 |
gaataatgatatataaggaataatgattttt-gctatatcattcacaaggtattttggcacaatatatagaaacatatttgctgtcctaataattgcttc |
86817 |
T |
|
| Q |
194 |
ctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataata----ctagt |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | |
|
|
| T |
86816 |
ctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatactagaatataat |
86717 |
T |
|
| Q |
290 |
atctcttaatttaaaagccttggt |
313 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
86716 |
atcacttaatttaaaagccttggt |
86693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 297 - 407
Target Start/End: Complemental strand, 86677 - 86567
Alignment:
| Q |
297 |
aatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcct |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86677 |
aatttaaaagccttggtcctgtaaccttaacacgcccctgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcct |
86578 |
T |
|
| Q |
397 |
agacacaggtt |
407 |
Q |
| |
|
||||| ||||| |
|
|
| T |
86577 |
agacagaggtt |
86567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University