View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11680_high_1 (Length: 423)
Name: NF11680_high_1
Description: NF11680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11680_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 30257589 - 30258001
Alignment:
| Q |
1 |
tcaaatggtggatgtggaatttgagaaggacattattttacatgaagagcttgaatcagataaaaatcaaaaacggagacgttctaagtccataatttgg |
100 |
Q |
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| T |
30257589 |
tcaaatggtggatgtggaatttgagaaggacattcttttacatgaagagcttgaatcagataaaaatcgaaaacggagacgttctaagtccataatttgg |
30257688 |
T |
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| Q |
101 |
aagccattggaactgtctgaagttggattctgtcctgaagttattgatgagtatgcacttggatgtaggagcaagacggttcgggagcttttgaagacga |
200 |
Q |
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| T |
30257689 |
aagccattggaactgtctgaagttgaattctgtcctgaagttattgatgagtatgcacttggatgtaggagcaagacggttcgggagcttttgaagacga |
30257788 |
T |
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| Q |
201 |
aagtaagaaaacatcttgtttatcttggatggacaattgaatggaccgaaaacaatactcctccacatagacgataccggtacaagtctccggataaact |
300 |
Q |
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| T |
30257789 |
aagtaagaaaacatcttgtttatcttggatggacaattgaatggaccgaaaacaatactcctccacatagacgataccggtacaagtctccggataaact |
30257888 |
T |
|
| Q |
301 |
taatccaaagttttacacttccatttttcaagttactaaaattttgcaagaggatcctaacatgaactctgggccacctcaaattgacagcaatctttca |
400 |
Q |
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| T |
30257889 |
taatccaaagttttacacttccatttttcaagttactaaaattttgcaagaggatcctaacatgaactctgggccacctcaaattgacagcaatctttca |
30257988 |
T |
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| Q |
401 |
catctgctctctg |
413 |
Q |
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| T |
30257989 |
catctgctctctg |
30258001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30257523 - 30257593
Alignment:
| Q |
1 |
tcaaatggtggatgtggaatttgagaaggacattattttacatgaagagcttgaatcagataaaaatcaaa |
71 |
Q |
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|||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
30257523 |
tcaaatggtggatgtggagtttgagaaggaaattcttttacatgaagagcttgaatcagataaaaatcaaa |
30257593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 30257462 - 30257527
Alignment:
| Q |
6 |
tggtggatgtggaatttgagaaggacattattttacatgaagagcttgaatcagataaaaatcaaa |
71 |
Q |
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| T |
30257462 |
tggtggatgaggaatttgagaaggaaaatcttttacatgaagagcttgaatcagataaaagtcaaa |
30257527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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