View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11680_low_1 (Length: 1030)

Name: NF11680_low_1
Description: NF11680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11680_low_1
NF11680_low_1
[»] chr3 (27 HSPs)
chr3 (812-1000)||(5366110-5366299)
chr3 (808-997)||(29100268-29100459)
chr3 (817-946)||(3328198-3328326)
chr3 (812-892)||(21353674-21353753)
chr3 (905-1004)||(33386461-33386557)
chr3 (817-1000)||(1417281-1417460)
chr3 (804-863)||(4386851-4386911)
chr3 (817-946)||(8126748-8126875)
chr3 (818-946)||(18552726-18552851)
chr3 (818-1000)||(40592572-40592750)
chr3 (804-864)||(25517085-25517146)
chr3 (968-1001)||(25517446-25517479)
chr3 (905-1001)||(27986245-27986338)
chr3 (813-892)||(21156542-21156620)
chr3 (812-846)||(29196507-29196541)
chr3 (819-946)||(35925599-35925723)
chr3 (818-946)||(36029212-36029338)
chr3 (817-859)||(37466408-37466450)
chr3 (905-946)||(1306154-1306195)
chr3 (905-946)||(1736145-1736186)
chr3 (905-946)||(3715843-3715884)
chr3 (905-946)||(16264553-16264594)
chr3 (905-946)||(27453164-27453205)
chr3 (905-946)||(27974793-27974834)
chr3 (905-946)||(32143527-32143568)
chr3 (905-946)||(39032395-39032436)
chr3 (905-946)||(47923745-47923786)
[»] chr4 (12 HSPs)
chr4 (812-1001)||(34670463-34670650)
chr4 (808-952)||(37781970-37782114)
chr4 (915-1001)||(873316-873401)
chr4 (828-946)||(5112365-5112482)
chr4 (583-658)||(873731-873807)
chr4 (905-1000)||(16623094-16623186)
chr4 (905-1000)||(16628673-16628765)
chr4 (809-885)||(18912276-18912351)
chr4 (905-946)||(10047585-10047626)
chr4 (905-946)||(24334015-24334056)
chr4 (905-946)||(28468388-28468429)
chr4 (905-946)||(31985485-31985526)
[»] chr2 (17 HSPs)
chr2 (812-986)||(18674213-18674386)
chr2 (804-1001)||(28770572-28770768)
chr2 (910-1000)||(12632890-12632980)
chr2 (583-666)||(16388261-16388344)
chr2 (583-666)||(16388674-16388757)
chr2 (804-891)||(2869599-2869687)
chr2 (818-1000)||(3278118-3278297)
chr2 (812-888)||(15903800-15903875)
chr2 (818-946)||(14698861-14698986)
chr2 (920-1000)||(41586351-41586429)
chr2 (812-946)||(2837881-2838015)
chr2 (905-946)||(23078323-23078364)
chr2 (905-1000)||(36757563-36757655)
chr2 (818-946)||(34388969-34389096)
chr2 (905-946)||(8040268-8040309)
chr2 (905-946)||(10445319-10445360)
chr2 (905-946)||(21630149-21630190)
[»] scaffold0002 (1 HSPs)
scaffold0002 (804-998)||(14785-14979)
[»] chr1 (30 HSPs)
chr1 (808-1001)||(25116498-25116690)
chr1 (812-1004)||(8281430-8281620)
chr1 (817-1000)||(47098626-47098804)
chr1 (583-666)||(8281135-8281219)
chr1 (817-1000)||(47102640-47102821)
chr1 (817-946)||(19073046-19073173)
chr1 (817-946)||(19120936-19121063)
chr1 (583-666)||(10996772-10996856)
chr1 (818-1000)||(32889558-32889734)
chr1 (814-888)||(17345429-17345502)
chr1 (804-892)||(35109443-35109531)
chr1 (817-892)||(32736902-32736976)
chr1 (585-649)||(35109745-35109811)
chr1 (808-849)||(11032268-11032309)
chr1 (809-849)||(918428-918468)
chr1 (817-946)||(40816668-40816793)
chr1 (809-892)||(3019839-3019921)
chr1 (838-953)||(11031320-11031433)
chr1 (812-946)||(22819541-22819676)
chr1 (905-946)||(3281911-3281952)
chr1 (815-864)||(10997071-10997120)
chr1 (915-1001)||(10997173-10997263)
chr1 (905-946)||(13598604-13598645)
chr1 (905-946)||(13604474-13604515)
chr1 (905-946)||(16124366-16124407)
chr1 (905-946)||(19358693-19358734)
chr1 (905-946)||(19361282-19361323)
chr1 (905-946)||(19366158-19366199)
chr1 (905-946)||(19379922-19379963)
chr1 (905-946)||(29652017-29652058)
[»] chr7 (20 HSPs)
chr7 (817-1000)||(23402814-23402993)
chr7 (817-1000)||(20284206-20284385)
chr7 (812-946)||(5817122-5817255)
chr7 (818-946)||(9185026-9185153)
chr7 (818-946)||(9189859-9189986)
chr7 (818-946)||(2580508-2580635)
chr7 (934-1004)||(27984678-27984747)
chr7 (905-1000)||(46516106-46516198)
chr7 (817-946)||(9235434-9235562)
chr7 (818-946)||(29159922-29160050)
chr7 (714-758)||(28617334-28617378)
chr7 (812-846)||(24526017-24526051)
chr7 (804-849)||(28617173-28617219)
chr7 (905-946)||(56153-56194)
chr7 (905-946)||(2479540-2479581)
chr7 (810-867)||(4162699-4162756)
chr7 (905-946)||(4796520-4796561)
chr7 (905-946)||(21640014-21640055)
chr7 (905-946)||(21646212-21646253)
chr7 (905-946)||(21983490-21983531)
[»] chr8 (17 HSPs)
chr8 (813-996)||(31513135-31513314)
chr8 (812-1004)||(3051232-3051420)
chr8 (818-946)||(19752246-19752372)
chr8 (819-1002)||(8863425-8863604)
chr8 (814-887)||(9054748-9054820)
chr8 (812-946)||(7493025-7493158)
chr8 (812-861)||(6813795-6813845)
chr8 (905-946)||(19175606-19175647)
chr8 (905-1000)||(7412544-7412636)
chr8 (818-946)||(26403081-26403208)
chr8 (812-846)||(30291620-30291654)
chr8 (804-892)||(5990467-5990555)
chr8 (971-1000)||(11712237-11712266)
chr8 (905-946)||(26288096-26288137)
chr8 (905-946)||(26301353-26301394)
chr8 (905-946)||(26313347-26313388)
chr8 (905-946)||(31071079-31071120)
[»] chr6 (15 HSPs)
chr6 (813-1001)||(30517922-30518112)
chr6 (808-953)||(33721404-33721548)
chr6 (818-946)||(31936695-31936820)
chr6 (812-946)||(14521785-14521919)
chr6 (828-1000)||(24435773-24435939)
chr6 (817-1000)||(31979631-31979808)
chr6 (817-946)||(21801196-21801323)
chr6 (578-664)||(98967-99055)
chr6 (812-846)||(16569047-16569081)
chr6 (908-946)||(21356244-21356282)
chr6 (909-946)||(5572095-5572132)
chr6 (905-946)||(5757330-5757371)
chr6 (905-946)||(18233050-18233091)
chr6 (905-946)||(22963903-22963944)
chr6 (905-946)||(23824449-23824490)
[»] scaffold0016 (1 HSPs)
scaffold0016 (812-1001)||(102292-102479)
[»] chr5 (19 HSPs)
chr5 (808-1001)||(2630339-2630530)
chr5 (818-1000)||(31300396-31300574)
chr5 (817-946)||(28832374-28832502)
chr5 (804-884)||(33030854-33030934)
chr5 (809-888)||(6741961-6742039)
chr5 (828-946)||(11181684-11181800)
chr5 (601-666)||(34842436-34842500)
chr5 (813-887)||(3651613-3651686)
chr5 (817-942)||(42127266-42127390)
chr5 (930-997)||(3325821-3325885)
chr5 (905-1000)||(30900070-30900161)
chr5 (813-892)||(5611255-5611333)
chr5 (818-946)||(10281870-10281997)
chr5 (818-946)||(17003811-17003938)
chr5 (905-946)||(9353184-9353225)
chr5 (905-946)||(11916824-11916865)
chr5 (809-846)||(31182986-31183022)
chr5 (905-946)||(36932200-36932241)
chr5 (905-946)||(38219604-38219645)
[»] scaffold0140 (1 HSPs)
scaffold0140 (905-1001)||(8217-8310)
[»] scaffold0148 (1 HSPs)
scaffold0148 (905-946)||(10935-10976)
[»] scaffold0098 (1 HSPs)
scaffold0098 (905-946)||(45402-45443)
[»] scaffold0087 (2 HSPs)
scaffold0087 (905-946)||(36684-36725)
scaffold0087 (905-946)||(43813-43854)
[»] scaffold0076 (2 HSPs)
scaffold0076 (808-892)||(15895-15977)
scaffold0076 (583-655)||(16190-16263)
[»] scaffold0006 (2 HSPs)
scaffold0006 (905-946)||(5889-5930)
scaffold0006 (905-946)||(133131-133172)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 9e-39; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 812 - 1000
Target Start/End: Complemental strand, 5366299 - 5366110
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    ||||||| ||| ||||| |||||||||||| ||||||  ||||| |||||| ||||||||| |||||| |||||||||||| ||         |||||||    
T  5366299 ctcacaatgaaaaaatcttaatttctacccttttttctagtcacccacactaataaatgaatcctaagcgaaaacactaaaggaaacttttcgatccttc 5366200  T
Q  912 caataat-gaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||| || ||||| | ||||||||||||||||||||||||||  || ||||||||||||||||||||||||||| |||||||||||||||    
T  5366199 caattattgaaatcttactacccaaggtgtttacaaatgttttccaactcaagaaataaactctcaccaaagactctcaaccctaaagtt 5366110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 808 - 997
Target Start/End: Original strand, 29100268 - 29100459
Alignment:
Q  808 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 907  Q
    ||||||||||||||||||| |||||||||||| | ||||||| |||||  ||||||||||||||| | ||||||| || |||||| ||         |||    
T  29100268 aaaactcacaaagaacaaaccctaatttctactcgtttttcaagtcacctacactcataaatgaatcataagagataatactaaaggaaacttttttatc 29100367  T
Q  908 cttccaataatgaaatttcactacccaaggtgtttac--aaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaa 997  Q
    |||| | ||||  ||| |||| |||| | ||||| ||  ||||||||| || |  |||||||||||||||||||||||||||||||||||||    
T  29100368 cttcaattaatataatctcaccacccgatgtgttcacaaaaatgtttcccaacctaagaaataaactctcaccaaagacactcaaccctaaa 29100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 817 - 946
Target Start/End: Complemental strand, 3328326 - 3328198
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||| |||||||||||||||||||||||  |||| ||||||| | |||| | ||||||||||||||| ||| ||         |||||||||||     
T  3328326 aaagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgtatcctaagagaaaacacaaaaggaagttttttgatccttccaatg 3328228  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  3328227 ctgaaatctcactacccaaggtgtttacaa 3328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 812 - 892
Target Start/End: Original strand, 21353674 - 21353753
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 892  Q
    ||||||||||||| | |||||||||||||||||||||| | |||||||||| |  |||||| | |||||||||||||||||    
T  21353674 ctcacaaagaacacaacctaatttctacccatttttcatgccactcacactta-caatgaatcttaagagaaaacactaaa 21353753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 905 - 1004
Target Start/End: Complemental strand, 33386557 - 33386461
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 1004  Q
    |||||||||||  |||||| |||||||||||||||||||| ||||||||||| | ||||| ||   ||| |  |||||||||||||||||||||||||||    
T  33386557 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttctcaacccaagagat--cctcactacaaagacactcaaccctaaagttctct 33386461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 817 - 1000
Target Start/End: Complemental strand, 1417460 - 1417281
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||| |||||||||||||||||||||||  |||| |||||||   |||||| ||||||||||||||| |||  |         |||||| ||||     
T  1417460 aaagaacaagtcctaatttctacccatttttcatatcacccacactc-ccaatgaatcctaagagaaaacacaaaagaaaactttttgatcctttcaatg 1417362  T
Q  917 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
     |||||| |||||||| || |||||||| |||||||| || | ||||  |||| ||| |  |||||||||||||||||||||||    
T  1417361 gtgaaatctcactacctaaagtgtttac-aatgtttcccaacccaag--ataacctcactacaaagacactcaaccctaaagtt 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 804 - 863
Target Start/End: Complemental strand, 4386911 - 4386851
Alignment:
Q  804 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactc 863  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||| ||||| |||||||    
T  4386911 gcttaaaagctcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactc 4386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 817 - 946
Target Start/End: Original strand, 8126748 - 8126875
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    |||||||||  | ||||||||||||||||||   ||||| ||||||| | |||||| | ||||||||||||| ||| ||         |||||||||||     
T  8126748 aaagaacaatacttaatttctacccatttttgt-gtcacccacactc-tcaatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatg 8126845  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
    ||||||| ||||||||||||||||||||||    
T  8126846 atgaaatctcactacccaaggtgtttacaa 8126875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 818 - 946
Target Start/End: Complemental strand, 18552851 - 18552726
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    ||||||||  |||||||||||||||||||    ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||      
T  18552851 aagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagttttttgatccttccaatgg 18552755  T
Q  918 tgaaatttcactacccaaggtgtttacaa 946  Q
    |||||| ||||||||||||||||||||||    
T  18552754 tgaaatctcactacccaaggtgtttacaa 18552726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 818 - 1000
Target Start/End: Complemental strand, 40592750 - 40592572
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    |||||||||  ||||||||||||||||||    ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  40592750 aagaacaaaatctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 40592653  T
Q  917 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  40592652 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 40592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 804 - 864
Target Start/End: Original strand, 25517085 - 25517146
Alignment:
Q  804 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactca 864  Q
    |||||||| ||||||||||||||| ||||||||||||  |||||||| ||||| ||||||||    
T  25517085 gcttaaaagctcacaaagaacaaaccctaatttctacttatttttcaagtcacccacactca 25517146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 968 - 1001
Target Start/End: Original strand, 25517446 - 25517479
Alignment:
Q  968 aaactctcaccaaagacactcaaccctaaagttc 1001  Q
    ||||||||||||||||||||||||||||||||||    
T  25517446 aaactctcaccaaagacactcaaccctaaagttc 25517479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 1001
Target Start/End: Complemental strand, 27986338 - 27986245
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 1001  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  ||||||||||||||||||||||||    
T  27986338 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagttc 27986245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 892
Target Start/End: Original strand, 21156542 - 21156620
Alignment:
Q  813 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 892  Q
    ||||||||||||||  || ||||||| |||||||| | ||||   ||||||||||||||  |||||||||||||||||||    
T  21156542 tcacaaagaacaaaatcttatttctatccatttttaa-gtcataaacactcataaatgattcctaagagaaaacactaaa 21156620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 812 - 846
Target Start/End: Original strand, 29196507 - 29196541
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttt 846  Q
    ||||||||||||||| |||||||||||||||||||    
T  29196507 ctcacaaagaacaaaccctaatttctacccatttt 29196541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 819 - 946
Target Start/End: Original strand, 35925599 - 35925723
Alignment:
Q  819 agaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    |||||||| |||||||||||||||||| |   ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||      
T  35925599 agaacaaaacctaatttctacccatttgt---gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatgg 35925694  T
Q  918 tgaaatttcactacccaaggtgtttacaa 946  Q
    |||||| ||||||||||||||||||||||    
T  35925695 tgaaatctcactacccaaggtgtttacaa 35925723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 818 - 946
Target Start/End: Original strand, 36029212 - 36029338
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||  |||||||||||||||||||    ||||||||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  36029212 aagaacaagacctaatttctacccattttgt--gtcactcactctcaaaatatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatg 36029308  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  36029309 gtgaaatctcactacccaaggtgtttacaa 36029338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 817 - 859
Target Start/End: Original strand, 37466408 - 37466450
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcac 859  Q
    ||||||||| |||||||||||||||||||||||  ||||||||    
T  37466408 aaagaacaagtcctaatttctacccatttttcatatcactcac 37466450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 1306154 - 1306195
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  1306154 atccttccaatggtgaaatctcactacccaaggtgtttacaa 1306195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 1736186 - 1736145
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  1736186 atccttccaatggtgaaatctcactacccaaggtgtttacaa 1736145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 3715884 - 3715843
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  3715884 atccttccaatggtgaaatctcactacccaaggtgtttacaa 3715843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 16264553 - 16264594
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  16264553 atccttccaatggtgaaatctcactacccaaggtgtttacaa 16264594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 27453164 - 27453205
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  27453164 atccttccaatggtgaaatctcactacccaaggtgtttacaa 27453205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 27974834 - 27974793
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  27974834 atccttccaatggtgaaatctcactacccaaggtgtttacaa 27974793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 32143527 - 32143568
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  32143527 atccttccaatggtgaaatctcactacccaaggtgtttacaa 32143568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 39032436 - 39032395
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  39032436 atccttccaatggtgaaatctcactacccaaggtgtttacaa 39032395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 47923786 - 47923745
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  47923786 atccttccaatggtgaaatctcactacccaaggtgtttacaa 47923745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 812 - 1001
Target Start/End: Complemental strand, 34670650 - 34670463
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||  |||||| |||||||||||||||||||  |         |||||||    
T  34670650 ctcacaaagaacaaatcataatttctatccatttttcaagtcactcacactca-caatgaatcctaagagaaaacactaaagaaaacttttagatccttc 34670552  T
Q  912 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 1001  Q
    |  |||||| || |||||||||||| || |||||||||||||||| ||||||||| |||||||||| ||| |||||| ||||||||||||    
T  34670551 ctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaaa-aaactctcactaaatacactctaccctaaagttc 34670463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 808 - 952
Target Start/End: Original strand, 37781970 - 37782114
Alignment:
Q  808 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 907  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||  |||||| |||||||| | ||||||||||||||||| ||         ||     
T  37781970 aaaactcacaaagaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaaaagagactttttgatt 37782069  T
Q  908 cttccaataatgaaatttcactacccaaggtgtttacaaatgttt 952  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  37782070 cttccaataatgaaatctcactacccaaggtgtttacaaatgttt 37782114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 915 - 1001
Target Start/End: Complemental strand, 873401 - 873316
Alignment:
Q  915 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 1001  Q
    |||||| || ||||||| ||||||||||||||||||| | || | ||||||| ||| | ||||||||||||||||||||||||||||    
T  873401 taatgagatctcactactcaaggtgtttacaaatgttccccaacccaagaaa-aaattatcaccaaagacactcaaccctaaagttc 873316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 828 - 946
Target Start/End: Original strand, 5112365 - 5112482
Alignment:
Q  828 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 927  Q
    |||||||| |||| |||||| | |||||||||||||| || |||| ||||||||||||||  ||| ||         |||||||||||  |||||| |||    
T  5112365 cctaatttgtacctattttttaagtcactcacactcacaa-tgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctca 5112463  T
Q  928 ctacccaaggtgtttacaa 946  Q
    |||||||||||||||||||    
T  5112464 ctacccaaggtgtttacaa 5112482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 873807 - 873731
Alignment:
Q  583 ttgtgaattcaaacaaataatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagtaaag 658  Q
    ||||||||| ||||||||||| | ||||||||| ||||||||| |||||||| | |||| |||||||| ||| ||||    
T  873807 ttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaag 873731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 1000
Target Start/End: Complemental strand, 16623186 - 16623094
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  16623186 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 16623094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 1000
Target Start/End: Complemental strand, 16628765 - 16628673
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  16628765 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 16628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 809 - 885
Target Start/End: Complemental strand, 18912351 - 18912276
Alignment:
Q  809 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaa 885  Q
    |||||||||||||||||| ||||| || || |||||||||| |||||||| || ||  |||||| ||||||||||||    
T  18912351 aaactcacaaagaacaaaccctaaattatatccatttttcaagtcactcaaaccca-caatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 10047585 - 10047626
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10047585 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10047626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 24334015 - 24334056
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  24334015 atccttccaatggtgaaatctcactacccaaggtgtttacaa 24334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 28468429 - 28468388
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  28468429 atccttccaatggtgaaatctcactacccaaggtgtttacaa 28468388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 31985526 - 31985485
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||| ||  |||||||||||||||||||||||||||||    
T  31985526 atccttcccatggtgaaatttcactacccaaggtgtttacaa 31985485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 812 - 986
Target Start/End: Complemental strand, 18674386 - 18674213
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    ||||||||||||||| | ||||||||| |||||||||| ||||| |||||||||||||||| | |||||||||||| |||| ||         ||||||     
T  18674386 ctcacaaagaacaaaccataatttctatccatttttcaagtcacccacactcataaatgaatcataagagaaaacattaaaggaagctttttgatcctt- 18674288  T
Q  912 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacac 986  Q
    |||||||||||| ||||| | |||||||||||| |||||||| || | |||||| ||||||||||||||||||||    
T  18674287 caataatgaaatctcactgctcaaggtgtttacgaatgtttcccaacccaagaattaaactctcaccaaagacac 18674213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 804 - 1001
Target Start/End: Complemental strand, 28770768 - 28770572
Alignment:
Q  804 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnn 902  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||| ||||  |||||||  || |||| ||||||||||||||||||| ||           
T  28770768 gcttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaa-tgaatcctaagagaaaacactaaaggaaactttt 28770670  T
Q  903 nnatccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 1001  Q
      |||||||   |||||| || ||||||||||||||||||||||||||||  || |  |||||| |||| |||||||||||||||||||||||||||||    
T  28770669 ttatccttcagctaatgagatctcactacccaaggtgtttacaaatgttttccaaccaaagaaa-aaacactcaccaaagacactcaaccctaaagttc 28770572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 910 - 1000
Target Start/End: Original strand, 12632890 - 12632980
Alignment:
Q  910 tccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||| | ||| |||||||||||||  ||||||||||||||||||||||    
T  12632890 tccaataataaaatctcatcacccaaggtgtttacaaatgtttctcaacccaataaataaactctcattaaagacactcaaccctaaagtt 12632980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 583 - 666
Target Start/End: Original strand, 16388261 - 16388344
Alignment:
Q  583 ttgtgaattcaaacaaataatcaaaccaataaacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 666  Q
    |||||||||| |||||||||||| ||| |||||||||||||||| ||| |||| ||||||||||||| || |||||||||||||    
T  16388261 ttgtgaattcgaacaaataatcacaccgataaacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctca 16388344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 583 - 666
Target Start/End: Complemental strand, 16388757 - 16388674
Alignment:
Q  583 ttgtgaattcaaacaaataatcaaaccaataaacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 666  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||| |||   |||||||||||| ||||||||||||||||    
T  16388757 ttgtgaattcaaacaaataatcacatcaataaacttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctca 16388674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 804 - 891
Target Start/End: Complemental strand, 2869687 - 2869599
Alignment:
Q  804 gcttaaaa-ctcacaaagaacaaat-cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaa 891  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||| ||||| ||||||| | |||||| ||||||||||||||||||    
T  2869687 gcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaacactaa 2869599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 818 - 1000
Target Start/End: Original strand, 3278118 - 3278297
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    |||||||||| |  |||||| | |||||||||  ||||||||||||| || |||||||||||||||||| ||||| ||         |||| ||| ||||    
T  3278118 aagaacaaattccgatttcttctcatttttcaattcactcacactcacaa-tgaaccctaagagaaaacgctaaaggaagttttttgatccgtcctataa 3278216  T
Q  918 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||||| |||||| |||||||||||||||||||||  || | ||||  | || |||||| ||| || ||||||||||||||||    
T  3278217 tgaaatctcactatccaaggtgtttacaaatgttttccaacccaag--agaatctctcatcaacgatactcaaccctaaagtt 3278297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 812 - 888
Target Start/End: Complemental strand, 15903875 - 15903800
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 888  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| ||||||| | |||||| |||| ||||||||||    
T  15903875 ctcacaaagaacaaattctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctatgagaaaacac 15903800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 818 - 946
Target Start/End: Complemental strand, 14698986 - 14698861
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    ||||||||  |||||||||||||||||||    ||||| ||||||| | |||||| ||||||||||||||| ||| ||         ||||||||||||     
T  14698986 aagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatag 14698890  T
Q  918 tgaaatttcactacccaaggtgtttacaa 946  Q
    |||||| ||||||||||||||||||||||    
T  14698889 tgaaatctcactacccaaggtgtttacaa 14698861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 920 - 1000
Target Start/End: Complemental strand, 41586429 - 41586351
Alignment:
Q  920 aaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||| |||||||||||||||||||||| |||||  || | ||||| |  | ||||||||||||||||||||||||||||||    
T  41586429 aaatctcactacccaaggtgtttacaactgttttccaacccaagaga--agctctcaccaaagacactcaaccctaaagtt 41586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 812 - 946
Target Start/End: Complemental strand, 2838015 - 2837881
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    ||||||||||||| | |||||||| | ||||||||||| ||||| ||| ||  | |||||| ||||||||||||||||||| ||         |||||||    
T  2838015 ctcacaaagaacacaacctaatttttgcccatttttcatgtcacccac-cttctcaatgaatcctaagagaaaacactaaaggaatattttttatccttc 2837917  T
Q  912 caataatgaaatt-tcactacccaaggtgtttacaa 946  Q
    ||||  ||||||| |||||| |||||||||||||||    
T  2837916 caatggtgaaattctcactatccaaggtgtttacaa 2837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 23078364 - 23078323
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  23078364 atccttccaatgatgaaatctcactacccaaggtgtttacaa 23078323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 1000
Target Start/End: Complemental strand, 36757655 - 36757563
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  36757655 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 36757563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 946
Target Start/End: Original strand, 34388969 - 34389096
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||  |||||||||||||||||||    ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  34388969 aagaacaagacctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 34389066  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  34389067 gtgaaatctcactacccaaggtgtttacaa 34389096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 8040268 - 8040309
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  8040268 atccttccaatggtgaaatctcactacccaaggtgtttacaa 8040309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 10445360 - 10445319
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10445360 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10445319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 21630149 - 21630190
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21630149 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21630190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 804 - 998
Target Start/End: Original strand, 14785 - 14979
Alignment:
Q  804 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaa-tgaaccctaagagaaaacactaaatgannnnnn 901  Q
    |||||||| |||||||||||| || |||| || ||||| |||||||| ||||| |||||||| ||| |||| ||||||||||||||||||| ||          
T  14785 gcttaaaagctcacaaagaactaaccctagttcctacctatttttcaagtcacccacactcacaaagtgaatcctaagagaaaacactaaaggagttttt 14884  T
Q  902 nnnatccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaag 998  Q
       || ||||||||||| |||| |||| ||| ||||| |||||||||||||| || | ||| |||||||||||||||||||||| ||||||||||||    
T  14885 g--atgcttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaacccaaaaaataaactctcaccaaagacattcaaccctaaag 14979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 5e-28; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 808 - 1001
Target Start/End: Complemental strand, 25116690 - 25116498
Alignment:
Q  808 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 907  Q
    ||||||||||||||| ||  |||||||| |||||  |||||| ||||  ||||||||||||| || | |||||||||||||||||  |         |||    
T  25116690 aaaactcacaaagaagaacccctaatttttaccc--ttttcaagtcatccacactcataaataaatcttaagagaaaacactaaagaaatttttttaatc 25116593  T
Q  908 cttccaataatgaaatttcactaccc-aaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 1001  Q
    |||| ||||||||||| ||||||||| || ||||||||||||||||| || | ||| |||||||||||||| ||||||||||||| |||||||||    
T  25116592 cttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataaactctcacaaaagacactcaactctaaagttc 25116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 812 - 1004
Target Start/End: Original strand, 8281430 - 8281620
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    |||||||||||||||| |||||||||| | ||| || | ||||| | |||||| || |||| || |||||||||||||||| ||         || ||||    
T  8281430 ctcacaaagaacaaattctaatttctatcaattatttaagtcacccgcactcacaa-tgaatccaaagagaaaacactaaaggaagtttttttattcttc 8281528  T
Q  912 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 1004  Q
    |  |||||| || ||||||||||||||||||||||||| ||| || | ||||||| ||||||||| ||||||  | |||||||||||||||||    
T  8281529 ctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaa-aaactctcatcaaagatgcccaaccctaaagttctct 8281620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 817 - 1000
Target Start/End: Complemental strand, 47098804 - 47098626
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||| |||||||||||||||| ||||||| |||| ||||||| | |||||| ||||||| ||||||| ||| ||         |||||||||||     
T  47098804 aaagaacaagtcctaatttctaccca-ttttcacatcacccacactc-tcaatgaaacctaagaaaaaacacaaaaggaagctttttgatccttccaatg 47098707  T
Q  917 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  47098706 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcgctacaaagacactcaaccctaaagtt 47098626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 583 - 666
Target Start/End: Original strand, 8281135 - 8281219
Alignment:
Q  583 ttgtgaattcaaacaaataatcaaaccaata-aacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 666  Q
    |||||||||||||| |||||| | ||||||| |||||||||||||||| ||||| || |||||||||| || |||||||||||||    
T  8281135 ttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctca 8281219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 817 - 1000
Target Start/End: Complemental strand, 47102821 - 47102640
Alignment:
Q  817 aaagaacaaatcctaatttcta--cccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaa 914  Q
    ||||||||| ||||||||||||  |||||||||||  |||||||||||| | |||||| ||||||| ||||||| |||  |         ||||||||||    
T  47102821 aaagaacaagtcctaatttctatacccatttttcatatcactcacactc-tcaatgaatcctaagaaaaaacacaaaagaaagctttttgatccttccaa 47102723  T
Q  915 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    | ||||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  47102722 tgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 47102640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 817 - 946
Target Start/End: Original strand, 19073046 - 19073173
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    |||||||||  |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  19073046 aaagaacaatacctaatttctacccattttgt--gtcactcacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 19073143  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| |||||| |||||||||||||||    
T  19073144 gtgaaatctcactatccaaggtgtttacaa 19073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 817 - 946
Target Start/End: Original strand, 19120936 - 19121063
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    |||||||||  |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  19120936 aaagaacaatacctaatttctacccattttgt--gtcactcacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 19121033  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| |||||| |||||||||||||||    
T  19121034 gtgaaatctcactatccaaggtgtttacaa 19121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 583 - 666
Target Start/End: Original strand, 10996772 - 10996856
Alignment:
Q  583 ttgtgaattcaaacaaataatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 666  Q
    |||||||||| |||||| ||||| ||||||||| |||| || |||||||||||| ||||||||||||| || |||||||| ||||    
T  10996772 ttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagtagcctca 10996856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 818 - 1000
Target Start/End: Original strand, 32889558 - 32889734
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         | |||||||||      
T  32889558 aagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac-aaaagaagcttttgaa-ccttccaatgg 32889654  T
Q  918 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||||| |||||||||||||||||||| |||||||| || | ||  ||| || ||| |  |||||||||||||||||||||||    
T  32889655 tgaaatctcactacccaaggtgtttac-aatgtttcccaaccca--aaaaaacctcactacaaagacactcaaccctaaagtt 32889734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 814 - 888
Target Start/End: Complemental strand, 17345502 - 17345429
Alignment:
Q  814 cacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 888  Q
    ||||||||||||| |||||||||||||||||||| | ||||| ||||||| | |||||| | |||||||||||||    
T  17345502 cacaaagaacaaaacctaatttctacccattttttaagtcacccacactc-ttaatgaatcttaagagaaaacac 17345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 804 - 892
Target Start/End: Complemental strand, 35109531 - 35109443
Alignment:
Q  804 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 892  Q
    |||||||| ||||||||||||||| | ||||||||||||| |||||| ||||| ||||||||  |||||| |||| ||||||| ||||||    
T  35109531 gcttaaaagctcacaaagaacaaaccttaatttctacccaattttcaagtcacacacactca-caatgaatcctacgagaaaatactaaa 35109443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 817 - 892
Target Start/End: Complemental strand, 32736976 - 32736902
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 892  Q
    |||||||||| |||||||||||||||||||||| ||||   |||||||  |||||| ||||||||||||| |||||    
T  32736976 aaagaacaaaccctaatttctacccatttttcaagtcatcgacactca-caatgaatcctaagagaaaaccctaaa 32736902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 585 - 649
Target Start/End: Complemental strand, 35109811 - 35109745
Alignment:
Q  585 gtgaattcaaacaaa-taatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaa 649  Q
    |||||||| |||||| |||||| ||||||||| ||||||||||||||| |||| |||||||||||||    
T  35109811 gtgaattcgaacaaaataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaa 35109745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 808 - 849
Target Start/End: Complemental strand, 11032309 - 11032268
Alignment:
Q  808 aaaactcacaaagaacaaatcctaatttctacccatttttca 849  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  11032309 aaaactcacaaagaacaaaacataatttctacccatttttca 11032268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 809 - 849
Target Start/End: Complemental strand, 918468 - 918428
Alignment:
Q  809 aaactcacaaagaacaaatcctaatttctacccatttttca 849  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  918468 aaactcacaaagaacaaaccataatttctacccatttttca 918428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 817 - 946
Target Start/End: Complemental strand, 40816793 - 40816668
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    |||||||||  |||||||||||| ||||| |   ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  40816793 aaagaacaagacctaatttctactcatttgt---gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 40816698  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  40816697 gtgaaatctcactacccaaggtgtttacaa 40816668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 809 - 892
Target Start/End: Original strand, 3019839 - 3019921
Alignment:
Q  809 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 892  Q
    ||||||||||||||||  | |||||||||||| |||||||| |||||||| || || ||||||| ||| | |||||||| ||||    
T  3019839 aaactcacaaagaacattttctaatttctaccaatttttcaagtcactcaaaccca-aaatgaatcctgatagaaaacaataaa 3019921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 838 - 953
Target Start/End: Complemental strand, 11031433 - 11031320
Alignment:
Q  838 acccatttttcacgtcactcacactcataaatgaaccctaagagaaaa-cactaaatgannnnnnnnnatccttccaataatgaaatttcactacccaag 936  Q
    |||||||||||| |||| ||||||||| || || | |||||||||||| ||||||| ||         ||||||||||||||||| |  ||||||||| |    
T  11031433 acccatttttcaagtcattcacactcacaa-tgtatcctaagagaaaaacactaaaggaagctttttgatccttccaataatgaact--cactacccacg 11031337  T
Q  937 gtgtttacaaatgtttc 953  Q
    |||||||||||||||||    
T  11031336 gtgtttacaaatgtttc 11031320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 812 - 946
Target Start/End: Original strand, 22819541 - 22819676
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagag--aaaacactaaatgannnnnnnnnatcct 909  Q
    ||||||||||| ||  | ||||||||| |||||||||| ||||| ||||||| | |||||| ||||||||  ||||||| ||| ||         |||||    
T  22819541 ctcacaaagaataagacataatttctaaccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaaaacacaaaaggaagctttttgatcct 22819639  T
Q  910 tccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    ||||||  |||||| | ||||||||||||||||||||    
T  22819640 tccaatggtgaaatgtaactacccaaggtgtttacaa 22819676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 3281911 - 3281952
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  3281911 atccttccaatggtgaaatctcactacccaaggtgtttacaa 3281952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 815 - 864
Target Start/End: Original strand, 10997071 - 10997120
Alignment:
Q  815 acaaagaacaaatcctaatttctacccatttttcacgtcactcacactca 864  Q
    ||||| |||||| |||||||||||||||||||||| ||||| | ||||||    
T  10997071 acaaataacaaaccctaatttctacccatttttcaagtcaccctcactca 10997120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 915 - 1001
Target Start/End: Original strand, 10997173 - 10997263
Alignment:
Q  915 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaat----aaactctcaccaaagacactcaaccctaaagttc 1001  Q
    |||||| ||||||||| |||||||||||| ||||||||| || |  |||||||    |||||||||||| | ||||||| || ||||||||    
T  10997173 taatgacatttcactatccaaggtgtttaaaaatgtttcccaacctaagaaattaagaaactctcaccacatacactcagccttaaagttc 10997263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 13598604 - 13598645
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  13598604 atccttccaatggtgaaatctcactacccaaggtgtttacaa 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 13604515 - 13604474
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  13604515 atccttccaatggtgaaatctcactacccaaggtgtttacaa 13604474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 16124407 - 16124366
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  16124407 atccttccaatggtgaaatctcactacccaaggtgtttacaa 16124366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 19358734 - 19358693
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19358734 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19358693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 19361323 - 19361282
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19361323 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19361282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 19366199 - 19366158
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19366199 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19366158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 19379963 - 19379922
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19379963 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19379922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 29652017 - 29652058
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  29652017 atccttccaatggtgaaatctcactacccaaggtgtttacaa 29652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 7e-24; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 817 - 1000
Target Start/End: Complemental strand, 23402993 - 23402814
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| ||| ||         ||| |||||||     
T  23402993 aaagaacaagtcctaatttctacccatttttcacatcactcacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatg 23402895  T
Q  917 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  23402894 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 23402814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 817 - 1000
Target Start/End: Original strand, 20284206 - 20284385
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||| ||||||||||||||| |||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  20284206 aaagaacaagtcctaatttctacccttttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 20284304  T
Q  917 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  20284305 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 20284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 812 - 946
Target Start/End: Complemental strand, 5817255 - 5817122
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||| | |||||| ||||||| ||||||| ||| ||         |||||||    
T  5817255 ctcacaaagaacaaaacctaatttctatccatttttcaagtcactcacactc-tcaatgaatcctaagaaaaaacacaaaaggaagctttttgatccttc 5817157  T
Q  912 caataatgaaatttcactacccaaggtgtttacaa 946  Q
    ||||  |||||| ||||| |||||||| |||||||    
T  5817156 caatggtgaaatctcactccccaaggtatttacaa 5817122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 818 - 946
Target Start/End: Complemental strand, 9185153 - 9185026
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  9185153 aagaacaagtcctaatttctacccatttttcatatcacccacactc-ttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatgg 9185055  T
Q  918 tgaaatttcactacccaaggtgtttacaa 946  Q
    |||||| ||||||||||||||||||||||    
T  9185054 tgaaatctcactacccaaggtgtttacaa 9185026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 818 - 946
Target Start/End: Complemental strand, 9189986 - 9189859
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  9189986 aagaacaagtcctaatttctacccatttttcatatcacccacactc-ttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatgg 9189888  T
Q  918 tgaaatttcactacccaaggtgtttacaa 946  Q
    |||||| ||||||||||||||||||||||    
T  9189887 tgaaatctcactacccaaggtgtttacaa 9189859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 818 - 946
Target Start/End: Original strand, 2580508 - 2580635
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    |||||||| ||||| |||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||| ||||      
T  2580508 aagaacaagtcctagtttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatgg 2580606  T
Q  918 tgaaatttcactacccaaggtgtttacaa 946  Q
    |||||| ||||||||||||||||||||||    
T  2580607 tgaaatctcactacccaaggtgtttacaa 2580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 934 - 1004
Target Start/End: Original strand, 27984678 - 27984747
Alignment:
Q  934 aaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 1004  Q
    ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||| ||  |||||||||||||    
T  27984678 aaggtttttacaaatatttctcatcccaagaaa-aaactctcaccaaagacacccagtcctaaagttctct 27984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 905 - 1000
Target Start/End: Complemental strand, 46516198 - 46516106
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || ||||||| ||   ||| |  |||||||||||||||||||||||    
T  46516198 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaagagat--cctcactacaaagacactcaaccctaaagtt 46516106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 817 - 946
Target Start/End: Complemental strand, 9235562 - 9235434
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||| |||||||||||||||||||||||  |||| | ||||| | || ||| ||||||||||||||| ||| ||         |||||| ||||     
T  9235562 aaagaacaagtcctaatttctacccatttttcatatcacccgcactc-tcaacgaatcctaagagaaaacacaaaaggaagctttttgatccttgcaatg 9235464  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| |||||| |||||||||||||||    
T  9235463 gtgaaatatcactatccaaggtgtttacaa 9235434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 818 - 946
Target Start/End: Original strand, 29159922 - 29160050
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||  ||||||||||||||||||||   ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  29159922 aagaacaagacctaatttctacccatttttgt-gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 29160020  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  29160021 ttgaaatctcactacccaaggtgtttacaa 29160050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 714 - 758
Target Start/End: Complemental strand, 28617378 - 28617334
Alignment:
Q  714 cacaagcatattcaaagcaacaaagataattaagagaggaagaaa 758  Q
    |||||||||||||||||||||||||||||  |||| |||||||||    
T  28617378 cacaagcatattcaaagcaacaaagataagcaagaaaggaagaaa 28617334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 812 - 846
Target Start/End: Original strand, 24526017 - 24526051
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttt 846  Q
    ||||||||||||||| |||||||||||||||||||    
T  24526017 ctcacaaagaacaaaacctaatttctacccatttt 24526051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 804 - 849
Target Start/End: Complemental strand, 28617219 - 28617173
Alignment:
Q  804 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttca 849  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  28617219 gcttaaaagctcacaaagaacaaaacctaatttctacctatttttca 28617173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 56153 - 56194
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  56153 atccttccaatggtgaaatctcactacccaaggtgtttacaa 56194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 2479540 - 2479581
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  2479540 atccttccaatggtgaaatctcactacccaaggtgtttacaa 2479581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 810 - 867
Target Start/End: Complemental strand, 4162756 - 4162699
Alignment:
Q  810 aactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataa 867  Q
    ||||||||||||||||||| ||||||||||  |||||||| |||| ||| || |||||    
T  4162756 aactcacaaagaacaaatcataatttctacttatttttcaagtcattcaaacccataa 4162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 4796561 - 4796520
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  4796561 atccttccaatggtgaaatctcactacccaaggtgtttacaa 4796520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 21640014 - 21640055
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21640014 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21640055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 21646212 - 21646253
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21646212 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21646253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 21983490 - 21983531
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21983490 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21983531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 813 - 996
Target Start/End: Complemental strand, 31513314 - 31513135
Alignment:
Q  813 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttcc 912  Q
    |||||||||||||| ||||||||||||| |||||  | ||||  |||||||| || |||| ||||||||||||||||||| ||         ||||||||    
T  31513314 tcacaaagaacaaa-cctaatttctacctattttcga-gtcatccacactcacaa-tgaatcctaagagaaaacactaaa-gatttttttttatccttcc 31513219  T
Q  913 aataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaa 996  Q
      ||||||||| ||||||  |||||||||||||||||||||||| | ||||||||||||||||| | ||||||||| |||||||    
T  31513218 tctaatgaaatctcactattcaaggtgtttacaaatgtttctcaacccaagaaataaactctcatcgaagacactcgaccctaa 31513135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 812 - 1004
Target Start/End: Original strand, 3051232 - 3051420
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    ||||||||||||||| | |||||||||||||||||||| |||||| |||||| | |||||| ||||||||||| ||| ||| ||         ||| |||    
T  3051232 ctcacaaagaacaaaacttaatttctacccatttttcatgtcacttacactc-tcaatgaatcctaagagaaagcacaaaaggaagctttttgatctttc 3051330  T
Q  912 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 1004  Q
    ||||  |||||| |||||||||||| ||||||| |||||||| || ||||||  | || | | |  |||||||||||||||||||||||||||    
T  3051331 caatggtgaaatctcactacccaagatgtttac-aatgtttcccaactcaag--agaaccccactacaaagacactcaaccctaaagttctct 3051420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 818 - 946
Target Start/End: Complemental strand, 19752372 - 19752246
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         ||||||||||| |    
T  19752372 aagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac-aaaggaagctttttgatccttccaatga 19752275  T
Q  918 tgaaatttcactacccaaggtgtttacaa 946  Q
    |||||| ||||||||||||||||||||||    
T  19752274 tgaaatctcactacccaaggtgtttacaa 19752246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 819 - 1002
Target Start/End: Complemental strand, 8863604 - 8863425
Alignment:
Q  819 agaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataat 918  Q
    |||||||| | |||||||||||||||||||| ||||||||||| |||||||||| |  ||||||||||| |||| ||         |||||   ||||||    
T  8863604 agaacaaaccttaatttctacccatttttcaagtcactcacacacataaatgaatctaaagagaaaacattaaagga-agattttaatcct---aataat 8863509  T
Q  919 gaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttct 1002  Q
    ||||| |||||| |||| |||||||||| ||||||  | |  |||||||||| | ||||| ||||||||||| | |||||||||    
T  8863508 gaaatctcactaaccaatgtgtttacaactgtttcctagcctaagaaataaattttcaccgaagacactcaaacttaaagttct 8863425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 814 - 887
Target Start/End: Complemental strand, 9054820 - 9054748
Alignment:
Q  814 cacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaaca 887  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||    
T  9054820 cacaaagaacaaaatctaatttctacccatttttcaagtcactcacactc-tcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 812 - 946
Target Start/End: Complemental strand, 7493158 - 7493025
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    |||||| |||||||| |||||||||||||  ||||||| ||||| ||||||| | ||| || ||||||| ||||||||||| ||         |||||||    
T  7493158 ctcacacagaacaaaacctaatttctacctgtttttcaagtcacccacactc-tcaataaatcctaagaaaaaacactaaaggaagctttttgatccttc 7493060  T
Q  912 caataatgaaatttcactacccaaggtgtttacaa 946  Q
     |||  |||||| ||||||||||||||||||||||    
T  7493059 taattgtgaaatctcactacccaaggtgtttacaa 7493025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 812 - 861
Target Start/End: Original strand, 6813795 - 6813845
Alignment:
Q  812 ctcacaaagaacaaatcctaattt-ctacccatttttcacgtcactcacac 861  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  6813795 ctcacaaagaacaaaacctaattttctacccatttttcaagtcactcacac 6813845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 19175647 - 19175606
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  19175647 atccttccaatagtgaaatctcactacccaaggtgtttacaa 19175606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 1000
Target Start/End: Original strand, 7412544 - 7412636
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||||| ||||  |||||| |||||||||||||||||||||| |||||| || | ||||| ||   |||||  |||||||||||||||||||||||    
T  7412544 atcctttcaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaagagatc--ctctctacaaagacactcaaccctaaagtt 7412636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 946
Target Start/End: Complemental strand, 26403208 - 26403081
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||  |||||||||||||||||||    ||||||||| |||| || ||||| | ||||||||||||| ||| ||         |||||||||||     
T  26403208 aagaacaagacctaatttctacccattttgt--gtcactcactctcacaatatgaatcataagagaaaacacaaaaggaagctttttgatccttccaatg 26403111  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  26403110 gtgaaatctcactacccaaggtgtttacaa 26403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 812 - 846
Target Start/End: Complemental strand, 30291654 - 30291620
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttt 846  Q
    ||||||||||||||| |||||||||||||||||||    
T  30291654 ctcacaaagaacaaaacctaatttctacccatttt 30291620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 804 - 892
Target Start/End: Complemental strand, 5990555 - 5990467
Alignment:
Q  804 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 892  Q
    |||||||| |||||||||||||   ||| ||||  |||||||||||| ||||| ||||||  | |||||| |||||||||||||||||||    
T  5990555 gcttaaaagctcacaaagaacacgacctcattttcacccatttttcaagtcacccacactt-tcaatgaatcctaagagaaaacactaaa 5990467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 971 - 1000
Target Start/End: Original strand, 11712237 - 11712266
Alignment:
Q  971 ctctcaccaaagacactcaaccctaaagtt 1000  Q
    ||||||||||||||||||||||||||||||    
T  11712237 ctctcaccaaagacactcaaccctaaagtt 11712266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 26288096 - 26288137
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26288096 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26288137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 26301353 - 26301394
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26301353 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26301394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 26313347 - 26313388
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26313347 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26313388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 31071120 - 31071079
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  31071120 atccttccaatggtgaaatctcactacccaaggtgtttacaa 31071079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 813 - 1001
Target Start/End: Complemental strand, 30518112 - 30517922
Alignment:
Q  813 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttcc 912  Q
    |||||||||||||| | ||||||||||| |||||||| || || |||||||| ||||||| | || |||||||||||||| ||         ||||||||    
T  30518112 tcacaaagaacaaaccttaatttctacctatttttcaagttacccacactcacaaatgaatctta-gagaaaacactaaaggaagtttttg-atccttcc 30518015  T
Q  913 aataatgaaat----ttcactacccaaggtgtttacaaatgttt-ctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 1001  Q
    |||||||||||     |||||||||||  | ||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||    
T  30518014 aataatgaaatctcactcactacccaaaatatttacaaatgtttcctaatct-aagaaataaactctcaccaaagacactcaactctaaagttc 30517922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 808 - 953
Target Start/End: Complemental strand, 33721548 - 33721404
Alignment:
Q  808 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 907  Q
    |||||||| |||||||||| ||||||||   ||||||||| | ||||| ||||||| |||||||| ||||||||||||||||||| |          |||    
T  33721548 aaaactcataaagaacaaaacctaattttcccccattttttaggtcacacacactcctaaatgaatcctaagagaaaacactaaagggagctttttcatc 33721449  T
Q  908 cttccaataatgaaatttcactacccaaggtgtttacaaatgtttc 953  Q
     ||||||||||||||| |||||| | ||||||||||||||||||||    
T  33721448 attccaataatgaaatctcacta-caaaggtgtttacaaatgtttc 33721404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 818 - 946
Target Start/End: Original strand, 31936695 - 31936820
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac--aaagaagctttttgatccttccaatgg 31936791  T
Q  918 tgaaatttcactacccaaggtgtttacaa 946  Q
    |||||| ||||||||||||||||||||||    
T  31936792 tgaaatctcactacccaaggtgtttacaa 31936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 812 - 946
Target Start/End: Original strand, 14521785 - 14521919
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    ||||||||||||| | |||||||||||| ||||||||| ||||| ||||||| | ||| || |||||||||||||| |||| ||         |||||||    
T  14521785 ctcacaaagaacacaacctaatttctacacatttttcatgtcacccacactc-tcaataaatcctaagagaaaacattaaaggaagattttttatccttc 14521883  T
Q  912 caataatgaaatt-tcactacccaaggtgtttacaa 946  Q
    ||||  ||||||| ||||||||||||||||||||||    
T  14521884 caatggtgaaattctcactacccaaggtgtttacaa 14521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 828 - 1000
Target Start/End: Complemental strand, 24435939 - 24435773
Alignment:
Q  828 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 927  Q
    |||||||||||||||||||| |  |||| |||| |||||| |||| ||||||||||||||| ||| ||         |||||||||||  |||||| |||    
T  24435939 cctaatttctacccattttt-atatcacccacattcataa-tgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctca 24435842  T
Q  928 ctacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    ||||||||||||||||| |||||||| || ||||||  | || ||| || |||||||||||||||||||||||    
T  24435841 ctacccaaggtgtttac-aatgtttcccaactcaag--agaacctcaca-caaagacactcaaccctaaagtt 24435773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 817 - 1000
Target Start/End: Original strand, 31979631 - 31979808
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    |||||||||  ||||||||||||||||||||   ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  31979631 aaagaacaagacctaatttctacccatttttgt-gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatg 31979727  T
Q  917 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
     |||||| |||||||||||||||||||| ||||||||||| | ||  ||| || ||| |  |||||||||||||||||||||||    
T  31979728 gtgaaatctcactacccaaggtgtttac-aatgtttctcaaccca--aaagaacctcactacaaagacactcaaccctaaagtt 31979808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 817 - 946
Target Start/End: Complemental strand, 21801323 - 21801196
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    |||||||||  | |||||||||||||||||    ||||| |||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  21801323 aaagaacaagacttaatttctacccattttgt--gtcacccacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 21801226  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  21801225 ttgaaatctcactacccaaggtgtttacaa 21801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 578 - 664
Target Start/End: Original strand, 98967 - 99055
Alignment:
Q  578 ttttattgtgaattcaaacaaataa-tcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtct 664  Q
    ||||||||||||||| | ||||||| |||  |||||||| |||| | |||| |||||||| ||||||||||||| ||| ||||||||||    
T  98967 ttttattgtgaattcgagcaaataaatcacgccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtct 99055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 812 - 846
Target Start/End: Complemental strand, 16569081 - 16569047
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttt 846  Q
    ||||||||||||||| |||||||||||||||||||    
T  16569081 ctcacaaagaacaaaacctaatttctacccatttt 16569047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 908 - 946
Target Start/End: Original strand, 21356244 - 21356282
Alignment:
Q  908 cttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  21356244 cttccaatgatgaaatctcactacccaaggtgtttacaa 21356282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 909 - 946
Target Start/End: Complemental strand, 5572132 - 5572095
Alignment:
Q  909 ttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  5572132 ttccaatagtgaaatctcactacccaaggtgtttacaa 5572095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 5757371 - 5757330
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  5757371 atccttccaatggtgaaatctcactacccaaggtgtttacaa 5757330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 18233050 - 18233091
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  18233050 atccttccaatggtgaaatctcactacccaaggtgtttacaa 18233091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 22963903 - 22963944
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  22963903 atccttccaatggtgaaatctcactacccaaggtgtttacaa 22963944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 23824490 - 23824449
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  23824490 atccttccaatggtgaaatctcactacccaaggtgtttacaa 23824449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 812 - 1001
Target Start/End: Complemental strand, 102479 - 102292
Alignment:
Q  812 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 911  Q
    |||||||| |||||| |||||||||||||||||||||| ||||| ||||||||| ||| ||  | |||||||||||||||| ||         |||||||    
T  102479 ctcacaaaaaacaaaccctaatttctacccatttttcaagtcacacacactcat-aataaattcgaagagaaaacactaaaggatgctttttgatccttc 102381  T
Q  912 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 1001  Q
    |  |||| |||| | |||  ||||||||||| |||||||||  || | | ||||||||| |||||||||| ||||||||| |||||||||    
T  102380 ctctaataaaatcttacttaccaaggtgttttcaaatgttttccaaccctagaaataaaatctcaccaaa-acactcaacactaaagttc 102292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 1e-19; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 808 - 1001
Target Start/End: Original strand, 2630339 - 2630530
Alignment:
Q  808 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 907  Q
    ||||| ||||||||||||| |||||||| ||  ||||||||| ||||| | ||||||  |||||| ||||||||||||||||||| ||         |||    
T  2630339 aaaacacacaaagaacaaaacctaatttttatacatttttcaagtcaccctcactca-caatgaatcctaagagaaaacactaaaggaagctttttgatc 2630437  T
Q  908 cttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 1001  Q
    ||| ||||  ||||||||||||| | ||| ||||| ||||||||||| | |  || |||||||||||||||||| || ||||||| ||||||||    
T  2630438 ctttcaatggtgaaatttcactatcaaagatgtttgcaaatgtttcttaaccaaataaataaactctcaccaaa-actctcaaccataaagttc 2630530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 818 - 1000
Target Start/End: Complemental strand, 31300574 - 31300396
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 917  Q
    |||||||| ||||||||||||||||||| |||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||      
T  31300574 aagaacaagtcctaatttctacccatttctcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatgg 31300476  T
Q  918 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    |||||| |||||||||||||||||||| ||||||||||| | ||||  | || ||| |  ||||||||||||||| |||||||    
T  31300475 tgaaatctcactacccaaggtgtttac-aatgtttctcaacccaag--agaacctcactacaaagacactcaaccttaaagtt 31300396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 817 - 946
Target Start/End: Original strand, 28832374 - 28832502
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||| | |||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  28832374 aaagaacaagttctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 28832472  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  28832473 gtgaaatctcactacccaaggtgtttacaa 28832502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 804 - 884
Target Start/End: Complemental strand, 33030934 - 33030854
Alignment:
Q  804 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaa 884  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||| | |||||| |||||||||||    
T  33030934 gcttaaaagctcacaaagaacaaaacataatttctacccatttttcaagtcactcacactc-tcaatgaatcctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 809 - 888
Target Start/End: Original strand, 6741961 - 6742039
Alignment:
Q  809 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 888  Q
    |||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||| | |||||| ||||||| |||||||    
T  6741961 aaactcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactc-tcaatgaatcctaagaaaaaacac 6742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 828 - 946
Target Start/End: Complemental strand, 11181800 - 11181684
Alignment:
Q  828 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 927  Q
    ||||||||||||||||||| || ||||| |||||||| || |||| ||||||||||||||| ||| ||         |||||||||||  ||||||||||    
T  11181800 cctaatttctacccatttt-catgtcacccacactcacaa-tgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttca 11181703  T
Q  928 ctacccaaggtgtttacaa 946  Q
    |||||||||||||||||||    
T  11181702 ctacccaaggtgtttacaa 11181684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 601 - 666
Target Start/End: Original strand, 34842436 - 34842500
Alignment:
Q  601 aatcaaaccaataaacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 666  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  34842436 aatcacaccaataaacttagatgtgtggagtaaaggaagtagtaatc-aagagtaaagtagcctca 34842500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 813 - 887
Target Start/End: Original strand, 3651613 - 3651686
Alignment:
Q  813 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaaca 887  Q
    |||||||||||||| |||||||||||||||||||||| |||||||| ||  || |||||| ||||||| ||||||    
T  3651613 tcacaaagaacaaaccctaatttctacccatttttcaagtcactcaaacctat-aatgaatcctaagataaaaca 3651686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 817 - 942
Target Start/End: Complemental strand, 42127390 - 42127266
Alignment:
Q  817 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||| ||||| |||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| |||  |         |||||||||||     
T  42127390 aaagaacaagtcctactttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatg 42127292  T
Q  917 atgaaatttcactacccaaggtgttt 942  Q
     |||||| ||||||||||||||||||    
T  42127291 gtgaaatctcactacccaaggtgttt 42127266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 930 - 997
Target Start/End: Complemental strand, 3325885 - 3325821
Alignment:
Q  930 acccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaa 997  Q
    ||||||||||||||||||||||||||| |||||||    ||| |||||||||||||||| ||||||||    
T  3325885 acccaaggtgtttacaaatgtttctcaactcaaga---gaacactcaccaaagacactcgaccctaaa 3325821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 1000
Target Start/End: Original strand, 30900070 - 30900161
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 1000  Q
    ||||||||  ||||||||| ||||||||||||||||||| |||||||   || ||||||  |||| | ||||| ||| ||||||||||||||||||    
T  30900070 atccttcctctaatgaaatctcactacccaaggtgtttataaatgtt--ccaactcaag--ataacccctcacaaaatacactcaaccctaaagtt 30900161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 892
Target Start/End: Original strand, 5611255 - 5611333
Alignment:
Q  813 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 892  Q
    ||||||||||||||  || ||||||| |||||||| | ||||   ||||||||||||||  |||||||||||||||||||    
T  5611255 tcacaaagaacaaaatcttatttctatccatttttaa-gtcataaacactcataaatgattcctaagagaaaacactaaa 5611333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 946
Target Start/End: Original strand, 10281870 - 10281997
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||  |||||||||||||||||||    ||||| |||||||| || ||||| ||||||||||||||| |||  |         |||||||||||     
T  10281870 aagaacaagacctaatttctacccattttgt--gtcacccacactcacaatatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatg 10281967  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  10281968 gtgaaatctcactacccaaggtgtttacaa 10281997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 946
Target Start/End: Complemental strand, 17003938 - 17003811
Alignment:
Q  818 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 916  Q
    ||||||||  ||||||||||||||||||   |  |||||||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  17003938 aagaacaagacctaatttctacccattta--atttcactcactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 17003841  T
Q  917 atgaaatttcactacccaaggtgtttacaa 946  Q
     |||||| ||||||||||||||||||||||    
T  17003840 gtgaaatctcactacccaaggtgtttacaa 17003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 9353225 - 9353184
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  9353225 atccttccaatggtgaaatctcactacccaaggtgtttacaa 9353184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 11916865 - 11916824
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  11916865 atccttccaatggtgaaatctcactacccaaggtgtttacaa 11916824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 809 - 846
Target Start/End: Complemental strand, 31183022 - 31182986
Alignment:
Q  809 aaactcacaaagaacaaatcctaatttctacccatttt 846  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31183022 aaactcacaaagaacaa-tcctaatttctacccatttt 31182986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 36932241 - 36932200
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  36932241 atccttccaatggtgaaatctcactacccaaggtgtttacaa 36932200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 38219604 - 38219645
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  38219604 atccttccaatggtgaaatctcactacccaaggtgtttacaa 38219645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 1001
Target Start/End: Complemental strand, 8310 - 8217
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 1001  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  ||||||||||||||||||||||||    
T  8310 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagttc 8217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 10935 - 10976
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10935 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 45402 - 45443
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  45402 atccttccaatggtgaaatctcactacccaaggtgtttacaa 45443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 36725 - 36684
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  36725 atccttccaatggtgaaatctcactacccaaggtgtttacaa 36684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 43854 - 43813
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  43854 atccttccaatggtgaaatctcactacccaaggtgtttacaa 43813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 808 - 892
Target Start/End: Complemental strand, 15977 - 15895
Alignment:
Q  808 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 892  Q
    ||||| ||||||||||||| ||||||||   ||||||||||  ||||  ||||||||||||||||  |||| |||| ||||||||    
T  15977 aaaacccacaaagaacaaaacctaattttcccccatttttctggtca--cacactcataaatgaattctaaaagaagacactaaa 15895  T

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Target: scaffold0076; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 583 - 655
Target Start/End: Complemental strand, 16263 - 16190
Alignment:
Q  583 ttgtgaattcaaacaaataatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagta 655  Q
    |||||||||  ||| |||||| | ||||||||| ||||||||||| ||| |||| ||||||||||||| |||||    
T  16263 ttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatgagta 16190  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Original strand, 5889 - 5930
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  5889 atccttccaatggtgaaatctcactacccaaggtgtttacaa 5930  T

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Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 133172 - 133131
Alignment:
Q  905 atccttccaataatgaaatttcactacccaaggtgtttacaa 946  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  133172 atccttccaatggtgaaatctcactacccaaggtgtttacaa 133131  T

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