View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11680_low_2 (Length: 450)

Name: NF11680_low_2
Description: NF11680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11680_low_2
NF11680_low_2
[»] chr1 (22 HSPs)
chr1 (1-435)||(5160008-5160442)
chr1 (334-415)||(30259541-30259625)
chr1 (335-415)||(2152191-2152272)
chr1 (335-404)||(15360827-15360899)
chr1 (338-415)||(48830130-48830210)
chr1 (338-415)||(49517006-49517086)
chr1 (334-415)||(1730824-1730907)
chr1 (339-411)||(17009613-17009688)
chr1 (341-415)||(4549596-4549673)
chr1 (341-415)||(33527201-33527278)
chr1 (345-415)||(40304108-40304181)
chr1 (335-403)||(45107556-45107626)
chr1 (335-412)||(5756743-5756823)
chr1 (341-416)||(17422991-17423070)
chr1 (335-412)||(44032056-44032136)
chr1 (343-411)||(44422642-44422711)
chr1 (341-373)||(2462906-2462938)
chr1 (372-415)||(4548693-4548737)
chr1 (337-390)||(15437898-15437953)
chr1 (340-412)||(36151562-36151637)
chr1 (372-415)||(37272640-37272684)
chr1 (343-403)||(45999354-45999417)
[»] chr7 (30 HSPs)
chr7 (335-415)||(5369745-5369826)
chr7 (335-422)||(49060473-49060563)
chr7 (341-406)||(35536046-35536114)
chr7 (341-400)||(45593788-45593850)
chr7 (335-413)||(5373158-5373239)
chr7 (335-390)||(30496637-30496694)
chr7 (342-415)||(5006563-5006639)
chr7 (335-415)||(9527144-9527227)
chr7 (335-415)||(27481348-27481431)
chr7 (341-401)||(31341133-31341196)
chr7 (335-390)||(33894556-33894612)
chr7 (330-366)||(35809010-35809046)
chr7 (335-415)||(39551602-39551685)
chr7 (335-415)||(47004020-47004103)
chr7 (335-366)||(2223081-2223112)
chr7 (335-415)||(46223127-46223209)
chr7 (335-406)||(1423079-1423152)
chr7 (342-412)||(6824858-6824931)
chr7 (343-413)||(28340452-28340525)
chr7 (335-412)||(2894750-2894830)
chr7 (338-379)||(3836753-3836794)
chr7 (341-390)||(45344480-45344529)
chr7 (335-415)||(46081966-46082050)
chr7 (392-421)||(47510100-47510129)
chr7 (339-415)||(1417201-1417280)
chr7 (335-363)||(27389316-27389344)
chr7 (372-415)||(29363490-29363534)
chr7 (372-415)||(31338480-31338524)
chr7 (372-415)||(44821931-44821975)
chr7 (335-363)||(47528042-47528070)
[»] chr5 (18 HSPs)
chr5 (341-415)||(26209467-26209543)
chr5 (335-415)||(32059643-32059725)
chr5 (350-412)||(14295454-14295519)
chr5 (341-415)||(16889674-16889751)
chr5 (341-411)||(28586824-28586897)
chr5 (335-404)||(35135727-35135799)
chr5 (341-415)||(18704090-18704166)
chr5 (335-415)||(18857454-18857537)
chr5 (335-373)||(29588813-29588851)
chr5 (341-410)||(14599362-14599436)
chr5 (335-389)||(21782650-21782706)
chr5 (343-415)||(42583396-42583469)
chr5 (344-415)||(1619034-1619106)
chr5 (335-384)||(7096213-7096264)
chr5 (341-397)||(12521490-12521546)
chr5 (334-366)||(13224361-13224393)
chr5 (346-390)||(38338268-38338312)
chr5 (372-415)||(41277404-41277448)
[»] chr6 (19 HSPs)
chr6 (338-410)||(33500540-33500615)
chr6 (340-415)||(33787799-33787877)
chr6 (336-415)||(6647323-6647403)
chr6 (336-415)||(10452414-10452496)
chr6 (335-415)||(33911336-33911418)
chr6 (341-415)||(29274283-29274360)
chr6 (335-389)||(32975911-32975967)
chr6 (335-415)||(4006647-4006730)
chr6 (338-415)||(22691574-22691652)
chr6 (335-390)||(24774691-24774748)
chr6 (335-410)||(4247694-4247771)
chr6 (373-417)||(5550105-5550150)
chr6 (335-411)||(323744-323823)
chr6 (335-415)||(2514635-2514718)
chr6 (340-389)||(4420555-4420606)
chr6 (335-382)||(8010290-8010338)
chr6 (335-407)||(9027510-9027585)
chr6 (372-415)||(10154193-10154237)
chr6 (342-390)||(31564768-31564816)
[»] chr8 (15 HSPs)
chr8 (341-415)||(11795031-11795108)
chr8 (347-415)||(6509357-6509426)
chr8 (341-416)||(9699940-9700018)
chr8 (341-415)||(28769393-28769470)
chr8 (335-390)||(5290574-5290626)
chr8 (343-415)||(1470910-1470985)
chr8 (335-363)||(4558731-4558759)
chr8 (335-390)||(8536129-8536185)
chr8 (347-415)||(9836908-9836979)
chr8 (342-415)||(10075605-10075681)
chr8 (335-383)||(26716525-26716573)
chr8 (341-413)||(29699193-29699268)
chr8 (335-411)||(30988050-30988129)
chr8 (372-412)||(34236135-34236175)
chr8 (335-379)||(43208226-43208270)
[»] chr2 (22 HSPs)
chr2 (339-415)||(29430693-29430771)
chr2 (334-415)||(29503137-29503219)
chr2 (335-417)||(3235436-3235519)
chr2 (341-413)||(5133711-5133786)
chr2 (341-411)||(7103541-7103612)
chr2 (335-414)||(37053527-37053609)
chr2 (347-415)||(1742086-1742157)
chr2 (335-415)||(10143105-10143188)
chr2 (335-415)||(35755556-35755639)
chr2 (335-414)||(3673740-3673822)
chr2 (335-366)||(13864583-13864614)
chr2 (335-413)||(14277949-14278031)
chr2 (335-366)||(38239657-38239688)
chr2 (341-415)||(3102632-3102709)
chr2 (335-365)||(9478232-9478262)
chr2 (341-415)||(17952755-17952832)
chr2 (341-415)||(39341139-39341218)
chr2 (335-389)||(5045238-5045294)
chr2 (341-415)||(39621892-39621967)
chr2 (335-403)||(33192126-33192197)
chr2 (335-415)||(34054955-34055038)
chr2 (376-415)||(37276722-37276762)
[»] chr4 (16 HSPs)
chr4 (335-415)||(32920454-32920535)
chr4 (340-415)||(35958593-35958671)
chr4 (335-415)||(23819023-23819105)
chr4 (335-412)||(42321936-42322016)
chr4 (335-385)||(51044544-51044596)
chr4 (335-390)||(4191672-4191730)
chr4 (347-406)||(21952906-21952968)
chr4 (336-415)||(49219073-49219155)
chr4 (335-390)||(54462180-54462235)
chr4 (341-411)||(30338650-30338723)
chr4 (335-413)||(54325093-54325174)
chr4 (341-383)||(55437373-55437415)
chr4 (335-416)||(21157701-21157785)
chr4 (335-404)||(46013365-46013437)
chr4 (372-415)||(18628597-18628641)
chr4 (335-388)||(21952508-21952563)
[»] chr3 (19 HSPs)
chr3 (335-415)||(38462214-38462297)
chr3 (343-390)||(51278237-51278286)
chr3 (346-415)||(24887337-24887409)
chr3 (346-415)||(28306102-28306174)
chr3 (335-411)||(20192664-20192743)
chr3 (343-415)||(22232767-22232842)
chr3 (335-390)||(12985403-12985458)
chr3 (341-388)||(20669118-20669167)
chr3 (341-415)||(23815992-23816066)
chr3 (335-414)||(42039092-42039173)
chr3 (342-415)||(1395611-1395687)
chr3 (335-412)||(3182419-3182499)
chr3 (337-366)||(44488819-44488848)
chr3 (375-414)||(2201103-2201143)
chr3 (335-384)||(24605102-24605153)
chr3 (372-415)||(31337455-31337499)
chr3 (341-390)||(40122832-40122883)
chr3 (372-415)||(41452495-41452539)
chr3 (335-415)||(42084305-42084388)
[»] scaffold0024 (1 HSPs)
scaffold0024 (335-415)||(27509-27592)
[»] scaffold0590 (1 HSPs)
scaffold0590 (335-385)||(1159-1211)
[»] scaffold0275 (1 HSPs)
scaffold0275 (335-385)||(2764-2816)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 5160008 - 5160442
Alignment:
Q  1 attggtatggatacaagagaggaagtcacagaataatgcggttgcatttgcaagagctactggtgatggtgttttcaatgcgataatatgggatgttgtt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160008 attggtatggatacaagagaggaagtcgcagaataatgcggttgcatttgcaagagctactggtgatggtgttttcaatgcgataatatgggatgttgtt 5160107  T
Q  101 gttgatccttcgtttcaagggcttggtctagggaaagctgttgtggagaggcttatgaaggatcttgtaggaaaagggattaccaatatttctctttatt 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  5160108 gttgatccttcgtttcaagggcttgggctagggaaagctgttgtggagaggcttatgagggatcttgtaggaagagggattaccaatatttctctttatt 5160207  T
Q  201 ctgagccaagagttcttggcttttatcgacctttgggttttgttgctgatcctgatggtattcgtggaatggtttactctacnnnnnnnnnnnnnnnnnn 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      
T  5160208 ctgagccaagagttcttggcttttatcgacctttgggttttgttgctgatcctgatggtattcgtggaatggtttactctacaaaaaacaaaagaaaaaa 5160307  T
Q  301 ntagttgtacgtgagtgttctttgtattttcatgaagtgtttatgtataagctatttctataacaacatataataaagtcaaactgttttatataagtta 400  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160308 atagttgtacgtgagtgttctttgtattttcatgaagtgtttatgtataagctatttctataacaacatataataaagtcaaactgttttatataagtta 5160407  T
Q  401 taagctgttttcatataagctaccataaagagttt 435  Q
    |||||||||||||||||||||||||||||||||||    
T  5160408 taagctgttttcatataagctaccataaagagttt 5160442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 30259625 - 30259541
Alignment:
Q  334 gaagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactg-ttttatataagttataagctgttttcata 415  Q
    |||||| ||||| | |||||||||||||||||| ||||  ||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  30259625 gaagtgcttatgcacaagctatttctataacaaaatataaaataaagtcaaactgctttgatataagctataagctgtttgcata 30259541  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 2152191 - 2152272
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||| ||||||||||||||||||||| |||| |||   |||||| ||||| |||| |||||||||||||| || |||||||    
T  2152191 aagtgcttatgtataagctatttctatgacaagataatgtaaagtgaaactattttaatataagttataaggtggtttcata 2152272  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 15360827 - 15360899
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataag 404  Q
    |||||||||||||| || ||||||||||||  || ||| ||||||||||||||||||| ||||||| ||||||    
T  15360827 aagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataag 15360899  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 415
Target Start/End: Complemental strand, 48830210 - 48830130
Alignment:
Q  338 tgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||||||||| ||||||||| ||  || ||| |||||||||||||| |||| ||||||| ||||| |||||||||||    
T  48830210 tgtttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 49517006 - 49517086
Alignment:
Q  338 tgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||| |||||||| ||||||||||||  || ||| |||||||||||| |||||| || |||| |||||||||||||||||    
T  49517006 tgtttgtgtataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcata 49517086  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 1730824 - 1730907
Alignment:
Q  334 gaagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgttttatataagttataagctgttttcata 415  Q
    |||||| ||||||||||||||||| | ||||  || ||| |||||||||||||| ||| || ||||||||||| | ||||||||    
T  1730824 gaagtgcttatgtataagctatttttttaaccaaagataaaataaagtcaaactatttcatgtaagttataagttattttcata 1730907  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 17009688 - 17009613
Alignment:
Q  339 gtttatgtataagctatttctataacaaca--tataataaagtcaaactgt-tttatataagttataagctgtttt 411  Q
    ||||||||||||||||||| || ||||| |   |||||||||||||||||| |||||||||| ||| |||||||||    
T  17009688 gtttatgtataagctatttttaaaacaaaagtaataataaagtcaaactgtatttatataagctattagctgtttt 17009613  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 4549673 - 4549596
Alignment:
Q  341 ttatgtataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||| |||||||||||| ||| ||  ||||||||||| |||||||||| ||| ||| |||||| ||||||||||    
T  4549673 ttatgtattagctatttctatgacagcagatataataaagtaaaactgttttcatacaagctataagatgttttcata 4549596  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 33527278 - 33527201
Alignment:
Q  341 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||| |||||||||||||| |||  || ||| |||| |||||||||||||| ||||||  |||||||||||||||||    
T  33527278 ttatgaataagctatttctaaaacaaaagataaaatacagtcaaactgttttcatataatctataagctgttttcata 33527201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 415
Target Start/End: Complemental strand, 40304181 - 40304108
Alignment:
Q  345 gtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||| |||||||| | ||||  |||| ||| | |||||| |||||||||||||||||||||||||    
T  40304181 gtataagctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcata 40304108  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 45107556 - 45107626
Alignment:
Q  335 aagtgtttatgtataagctatttctataa-caacatataataaagtcaaactgtttt-atataagttataa 403  Q
    ||||| |||| ||||||||||||||||||  || ||| |||||||||||||| |||| |||||||||||||    
T  45107556 aagtgcttatctataagctatttctataagaaaaataaaataaagtcaaactattttcatataagttataa 45107626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 5756823 - 5756743
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttc 412  Q
    ||||||| | |||||||||||||||||||||| | ||   ||||||| |||||||||| |||||| ||||||| |||||||    
T  5756823 aagtgttcacgtataagctatttctataacaaaagatgatataaagttaaactgttttcatataaattataagttgttttc 5756743  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 17423070 - 17422991
Alignment:
Q  341 ttatgtataagctatttctataacaa---catataataaagtcaaactg-ttttatataagttataagctgttttcatat 416  Q
    ||||||||||||| ||||||||||||    ||| ||||||||||| ||| ||| ||||||| |||||| |||||||||||    
T  17423070 ttatgtataagctttttctataacaaaacgataaaataaagtcaagctgatttcatataagctataagttgttttcatat 17422991  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 44032136 - 44032056
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttc 412  Q
    ||||||||||||||||||  |||||||||||| |  || |||||||||||| |||||| ||||||| ||||| || |||||    
T  44032136 aagtgtttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactattttc 44032056  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 44422642 - 44422711
Alignment:
Q  343 atgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgtttt 411  Q
    ||||||||||||||| |||||||  ||| |||||  |||||||||||| ||||||| |||||||| ||||    
T  44422642 atgtataagctatttttataacatgataaaataatctcaaactgttttcatataagctataagctatttt 44422711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 2462906 - 2462938
Alignment:
Q  341 ttatgtataagctatttctataacaacatataa 373  Q
    |||||||||||||||||||||||||| ||||||    
T  2462906 ttatgtataagctatttctataacaaaatataa 2462938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 4548693 - 4548737
Alignment:
Q  372 aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||    
T  4548693 aataaagtcaaactgtttttatacaagtcataagctgttttcata 4548737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 15437898 - 15437953
Alignment:
Q  337 gtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt 390  Q
    ||||||||||| ||||||||||||||||  || ||| ||| |||||||||||||||    
T  15437898 gtgtttatgtaaaagctatttctataacaaaaaataaaattaagtcaaactgtttt 15437953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 36151637 - 36151562
Alignment:
Q  340 tttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttc 412  Q
    ||||||||||||||||||| |||||  || ||| |||||||||||| ||||||  ||||||||||||  |||||||    
T  36151637 tttatgtataagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataagttataaattgttttc 36151562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 37272684 - 37272640
Alignment:
Q  372 aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  37272684 aataaagtcaatctgttttcatataagctataagctgttttcata 37272640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 45999417 - 45999354
Alignment:
Q  343 atgtataagctatttctataacaacatata--ataaagtcaaactg-ttttatataagttataa 403  Q
    |||||||||||||||||||||||| | |||  |||||||||||||| ||| ||||||| |||||    
T  45999417 atgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctataa 45999354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 5369826 - 5369745
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||| |||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| | |||||||||||||||||    
T  5369826 aagtgcttatgtataagctaattctataaaaaaaattaataaagtcaaactgttttcatatatgctataagctgttttcata 5369745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 422
Target Start/End: Original strand, 49060473 - 49060563
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaact-gttttatataagttataagctgttttcatataagcta 422  Q
    |||| |||||||||||||||||||||||||  || ||| |||||||||||| |  ||||||||||| |||||| | |||||||||||||||    
T  49060473 aagtatttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcatataagcta 49060563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 35536046 - 35536114
Alignment:
Q  341 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagct 406  Q
    ||||||||||||||||||||||||  || ||| |||||||||||| |||||| ||||||||||||||||    
T  35536046 ttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataagttataagct 35536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 400
Target Start/End: Complemental strand, 45593850 - 45593788
Alignment:
Q  341 ttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagtta 400  Q
    ||||||||||||||||||| ||||||  |||| ||||||||||||||||||| ||||||||||    
T  45593850 ttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatataagtta 45593788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 413
Target Start/End: Original strand, 5373158 - 5373239
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagt-caaactgttttatataagttataagctgttttca 413  Q
    ||||| ||||||||| ||||||||||||||  || ||| |||||||| |||||  |||||||||||||||||| ||||||||    
T  5373158 aagtgcttatgtatatgctatttctataacaaaagataaaataaagtccaaacatttttatataagttataagttgttttca 5373239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 30496637 - 30496694
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt 390  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||||||||| ||||||    
T  30496637 aagtgtttatgtataaactatttctataacaaaatataaaataaagtcaaattgtttt 30496694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 5006639 - 5006563
Alignment:
Q  342 tatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||| |||||||  || ||| ||||||||||||||||||| ||||||| |||||  ||||||||||    
T  5006639 tatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcata 5006563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 9527227 - 9527144
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||| |||| |||| ||||| |||||||||| |  |||||||||||||||||||||| ||||||  |||||| ||||||||||    
T  9527227 aagtgcttatatatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcata 9527144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 27481431 - 27481348
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaa--catataataaagtcaaactgttt-tatataagttataagctgttttcata 415  Q
    ||||||||||||||||||||||||||||||||   ||| ||  ||||||||||||||  ||||||| |||||| | ||||||||    
T  27481431 aagtgtttatgtataagctatttctataacaaaggataaaacgaagtcaaactgtttccatataagctataagttattttcata 27481348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 31341133 - 31341196
Alignment:
Q  341 ttatgtataagctatttctataac--aacatataataaagtcaaact-gttttatataagttat 401  Q
    ||||||||||||||||| ||||||  || ||| |||||||||||||| ||||||||||||||||    
T  31341133 ttatgtataagctatttgtataacaaaagataaaataaagtcaaactggttttatataagttat 31341196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 33894556 - 33894612
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataata-aagtcaaactgtttt 390  Q
    ||||| |||||||||||||||||||||||||| | |||| | |||||||||||||||    
T  33894556 aagtgcttatgtataagctatttctataacaaaagataaaataagtcaaactgtttt 33894612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 35809046 - 35809010
Alignment:
Q  330 tcatgaagtgtttatgtataagctatttctataacaa 366  Q
    |||| ||||||||||||||||||||||||||||||||    
T  35809046 tcataaagtgtttatgtataagctatttctataacaa 35809010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 39551685 - 39551602
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||| |||| ||||||||||||||||||||  || ||||| |||||| |||||||||| ||||||| ||||| || ||||||||    
T  39551685 aagtatttaagtataagctatttctataacaaaagatatactaaagtaaaactgttttcatataagctataatctattttcata 39551602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 47004020 - 47004103
Alignment:
Q  335 aagtgtttatgtataagctatttctataaca--acatataataaagtcaaact-gttttatataagttataagctgttttcata 415  Q
    |||||||||| | ||||||||||||||||||  | ||| ||||||||||||||  |||||||| |  |||||||||||||||||    
T  47004020 aagtgtttatatgtaagctatttctataacaatagataaaataaagtcaaactatttttatatgaactataagctgttttcata 47004103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 366
Target Start/End: Original strand, 2223081 - 2223112
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaa 366  Q
    ||||||||||||||||||||||||||||||||    
T  2223081 aagtgtttatgtataagctatttctataacaa 2223112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 46223209 - 46223127
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgttttatataagttataagctgttttcata 415  Q
    |||||||||||||||||||||||| ||||||| | ||||  ||||||| |||| ||| ||||||  ||  |||||||||||||    
T  46223209 aagtgtttatgtataagctatttccataacaaaagataaattaaagtcgaactatttcatataaactaagagctgttttcata 46223127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 1423079 - 1423152
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgttttatataagttataagct 406  Q
    ||||| |||||||||||||||||  ||||||| | ||||  |||| ||||||||||||| |||||||| |||||    
T  1423079 aagtgattatgtataagctattttcataacaaaagataaaataaattcaaactgttttaaataagttagaagct 1423152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 6824858 - 6824931
Alignment:
Q  342 tatgtataagctatttctataac--aacatataataaagtcaaactgtttta-tataagttataagctgttttc 412  Q
    |||||||||||||||||||||||  || ||| || ||||| ||| ||||||| || ||||||||||||||||||    
T  6824858 tatgtataagctatttctataacaaaagatagaacaaagttaaattgttttagtacaagttataagctgttttc 6824931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 28340525 - 28340452
Alignment:
Q  343 atgtataagctatttctataacaac--atataataaagtcaaactgtttt-atataagttataagctgttttca 413  Q
    |||||||||||||||||  |||||   ||| ||||||||||||||||||| || ||||||||||| ||||||||    
T  28340525 atgtataagctatttcttcaacaaacaataaaataaagtcaaactgttttcatgtaagttataagttgttttca 28340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 412
Target Start/End: Original strand, 2894750 - 2894830
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttc 412  Q
    ||||||| |||||||||||||||||||||||| | ||||  ||||||  ||||||||| |  ||||||||||||| |||||    
T  2894750 aagtgttcatgtataagctatttctataacaaaagataaattaaagttgaactgttttcaagtaagttataagctattttc 2894830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 3836794 - 3836753
Alignment:
Q  338 tgtttatgtataagctatttctataacaacatataataaagt 379  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||    
T  3836794 tgtttatgtataagctatttctataacaagataaaatcaagt 3836753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 45344529 - 45344480
Alignment:
Q  341 ttatgtataagctatttctataacaacatataataaagtcaaactgtttt 390  Q
    |||||||||||||||||||| ||||| ||| || ||||||||| ||||||    
T  45344529 ttatgtataagctatttctacaacaagataaaacaaagtcaaattgtttt 45344480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 46081966 - 46082050
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtc-aaactgtttt-atataagttataagctgttttcata 415  Q
    ||||| |||| |||||||||||||||||||  ||  || || |||||| |||||||||| |||||||||||||| ||||||||||    
T  46081966 aagtgattatatataagctatttctataacgaaagttaaaacaaagtcaaaactgttttcatataagttataagttgttttcata 46082050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 421
Target Start/End: Original strand, 47510100 - 47510129
Alignment:
Q  392 tataagttataagctgttttcatataagct 421  Q
    ||||||||||||||||||||||||||||||    
T  47510100 tataagttataagctgttttcatataagct 47510129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 1417201 - 1417280
Alignment:
Q  339 gtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||||||| |||||| ||||||  || ||| |||||||||||| |||||| |||||||  ||||| ||||||||||    
T  1417201 gtttatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcata 1417280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 363
Target Start/End: Original strand, 27389316 - 27389344
Alignment:
Q  335 aagtgtttatgtataagctatttctataa 363  Q
    |||||||||||||||||||||||||||||    
T  27389316 aagtgtttatgtataagctatttctataa 27389344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 29363490 - 29363534
Alignment:
Q  372 aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||    
T  29363490 aataaagtcaaactgttttcatattagttataagctgttatcata 29363534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 31338480 - 31338524
Alignment:
Q  372 aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||    
T  31338480 aataaagtcaaactgtttttatataagttataagttgtttccata 31338524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 44821931 - 44821975
Alignment:
Q  372 aataaagtcaaactgtttta-tataagttataagctgttttcata 415  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||    
T  44821931 aataaagtcaaattgtttttgtataagttataagctgttttcata 44821975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 47528070 - 47528042
Alignment:
Q  335 aagtgtttatgtataagctatttctataa 363  Q
    |||||||||||||||||||||||||||||    
T  47528070 aagtgtttatgtataagctatttctataa 47528042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 26209543 - 26209467
Alignment:
Q  341 ttatgtataagctatttctataacaacatataataaagtcaaactgtttt--atataagttataagctgttttcata 415  Q
    ||||||||||| |||||||||||||| ||| ||||||||| || ||||||  ||||||| |||||||||||||||||    
T  26209543 ttatgtataagttatttctataacaagataaaataaagtccaattgttttcaatataagctataagctgttttcata 26209467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 32059725 - 32059643
Alignment:
Q  335 aagtgtttatgtataagctatttctataac-aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||| ||||||||||||| ||| | |||| || ||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  32059725 aagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagctataagctgttttcata 32059643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 14295454 - 14295519
Alignment:
Q  350 agctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttc 412  Q
    ||||||||||||||||| | ||||  ||||||||||||||||| ||||||| ||||||||||||||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttc 14295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 16889674 - 16889751
Alignment:
Q  341 ttatgtataagctatttctataacaacatataa--taaagtcaaactg-ttttatataagttataagctgttttcata 415  Q
    |||||||||||||||||| ||||||| | ||||  | ||||||||||| ||||||| ||| |||||||||||||||||    
T  16889674 ttatgtataagctatttccataacaaaagataaacttaagtcaaactgtttttatagaagctataagctgttttcata 16889751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 411
Target Start/End: Complemental strand, 28586897 - 28586824
Alignment:
Q  341 ttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgtttt 411  Q
    |||||||||  ||||||||||||||| | ||||  ||||||||||||||||| |||||| ||||||||||||||    
T  28586897 ttatgtatacactatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgtttt 28586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 404
Target Start/End: Complemental strand, 35135799 - 35135727
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataag 404  Q
    ||||||||||||||||| ||||||||||||  || ||| |||||||||||||| |||| ||||||| ||||||    
T  35135799 aagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataag 35135727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 18704166 - 18704090
Alignment:
Q  341 ttatgtataagctatttctataacaacatat-aataaagtcaaact-gttttatataagttataagctgttttcata 415  Q
    ||||||||||| |||||||||||||| | || ||||||||||| ||  ||||||||||| |||||| ||||||||||    
T  18704166 ttatgtataagttatttctataacaaaagataaataaagtcaagctatttttatataagctataagttgttttcata 18704090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 18857537 - 18857454
Alignment:
Q  335 aagtgtttatgtataagctatttctataaca-ac-atataataaagtcaaactg-ttttatataagttataagctgttttcata 415  Q
    ||||||||||| |||||||||||| |||||| || ||| |||||||||||| || |||| |||||  |||||||||||||||||    
T  18857537 aagtgtttatgaataagctatttcaataacacacgataaaataaagtcaaattgtttttctataatctataagctgttttcata 18857454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 29588813 - 29588851
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataa 373  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  29588813 aagtgcttatgtataagctatttctataacaaaatataa 29588851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 14599436 - 14599362
Alignment:
Q  341 ttatgtataagctatttctataacaaca----tataataaagtcaaactgtttt-atataagttataagctgttt 410  Q
    |||||| ||||||||||||||||||| |    || ||| ||||||||||||||| |||||||||||||| |||||    
T  14599436 ttatgtttaagctatttctataacaaaactgataaaattaagtcaaactgttttcatataagttataagttgttt 14599362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 21782706 - 21782650
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaaca--tataataaagtcaaactgttt 389  Q
    |||||||||||| ||||||||||||||||||| |  || |||||||||||| |||||    
T  21782706 aagtgtttatgtttaagctatttctataacaaaagctaaaataaagtcaaattgttt 21782650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 42583469 - 42583396
Alignment:
Q  343 atgtataagctatttctataacaacatataataaagtcaaactgttt-tatataagttataagctgttttcata 415  Q
    |||||||||| |||||||||||||   |||| | ||| ||||||||| | |||| |||||||||||||||||||    
T  42583469 atgtataagccatttctataacaaaggataaaatagttaaactgtttatgtatatgttataagctgttttcata 42583396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 1619034 - 1619106
Alignment:
Q  344 tgtataagctatttctataacaacatataataaagtcaaactgttt-tatataagttataagctgttttcata 415  Q
    ||||||||||||||||| ||||| | |||||||||| ||| | |||   |||||| |||||||||||||||||    
T  1619034 tgtataagctatttctaaaacaaaaaataataaagttaaattctttccgtataagctataagctgttttcata 1619106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 7096264 - 7096213
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaac 384  Q
    ||||| ||||||||||||||||||||||||  || ||| |||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 7096213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 12521490 - 12521546
Alignment:
Q  341 ttatgtataagctatttctataacaacatataataaagtcaaactgttttatataag 397  Q
    ||||||||||| | ||||||||||||  || |||| |||||||||||||| ||||||    
T  12521490 ttatgtataagttgtttctataacaaactaaaatagagtcaaactgttttgtataag 12521546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 13224361 - 13224393
Alignment:
Q  334 gaagtgtttatgtataagctatttctataacaa 366  Q
    |||||| ||||||||||||||||||||||||||    
T  13224361 gaagtgcttatgtataagctatttctataacaa 13224393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 38338268 - 38338312
Alignment:
Q  346 tataagctatttctataacaacatataataaagtcaaactgtttt 390  Q
    ||||||||| ||||||||||| ||| ||||||||||||| |||||    
T  38338268 tataagctagttctataacaaaataaaataaagtcaaaccgtttt 38338312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 41277448 - 41277404
Alignment:
Q  372 aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  41277448 aataaagtcaaactgttttcatataagttaaaagttgttttcata 41277404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 33500615 - 33500540
Alignment:
Q  338 tgtttatgtataagctatttctataacaacatataa--taaagtcaaactgttt-tatataagttataagctgttt 410  Q
    ||||||||||||||||||||||||||||| | ||||  |||| |||||||||||  ||||||||||||||||||||    
T  33500615 tgtttatgtataagctatttctataacaaaagataaagtaaaatcaaactgtttcaatataagttataagctgttt 33500540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 33787877 - 33787799
Alignment:
Q  340 tttatgtataagctatttctataacaacatat--aataaagtcaaactg-ttttatataagttataagctgttttcata 415  Q
    ||||||||||| ||||||||||||||| ||||  || ||||||||| || ||| |||||||||||||||||||||||||    
T  33787877 tttatgtataaactatttctataacaaaatataaaacaaagtcaaattgatttcatataagttataagctgttttcata 33787799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 6647323 - 6647403
Alignment:
Q  336 agtgtttatgtataagctatttctataacaacatataataaagtcaaact-gttttatataagttataagctgttttcata 415  Q
    |||| ||||||||||| |||||||||||||| | |||||||||||||| |  ||| ||||| ||||||| |||||||||||    
T  6647323 agtgcttatgtataagttatttctataacaaaaaataataaagtcaaattactttaatataggttataatctgttttcata 6647403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 10452496 - 10452414
Alignment:
Q  336 agtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||| |||||||||||||||||||||||||| ||||  |||||| ||||||| |||| ||||||| |||||| ||||| ||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccata 10452414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 33911418 - 33911336
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgttttatataagttataagctgttttcata 415  Q
    |||||||||||||||| |||||| |||||||| | ||  |||||||| |||||| |  |||||| ||||||||||||||||||    
T  33911418 aagtgtttatgtataatctatttttataacaaaagatcaaataaagttaaactgatccatataatttataagctgttttcata 33911336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 29274360 - 29274283
Alignment:
Q  341 ttatgtataagctatttctata--acaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||||||||  | || ||| |||||||||||| |||||| ||||||| ||||| |||||||||||    
T  29274360 ttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcata 29274283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 32975911 - 32975967
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgttt 389  Q
    ||||||||||||||||| ||||||| |||||| ||||  ||||||||||||||||||    
T  32975911 aagtgtttatgtataagttatttctgtaacaaaatataaaataaagtcaaactgttt 32975967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 4006647 - 4006730
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaac--atataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||| ||||| ||||| ||||||||||||||   ||| |||||||||||| |||||| ||||||| |||||| ||||||||||    
T  4006647 aagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcata 4006730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 415
Target Start/End: Complemental strand, 22691652 - 22691574
Alignment:
Q  338 tgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||| |||||||||| | |||||| |||  ||||| ||||| |||||| ||||||||||||| || ||||||||    
T  22691652 tgtttatgtgtaagctatttttgtaacaagataacataaattcaaattgttttcatataagttataacctattttcata 22691574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 24774691 - 24774748
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt 390  Q
    ||||| |||| ||||| ||||||||||||||| ||||  |||||||||||||||||||    
T  24774691 aagtgcttatatataaactatttctataacaaaatataaaataaagtcaaactgtttt 24774748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 410
Target Start/End: Complemental strand, 4247771 - 4247694
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatat-aataaagtcaaactgtt-ttatataagttataagctgttt 410  Q
    ||||| |||||||||||||||||||||||||| | || || ||| |||||||||| | ||| |||| |||||||||||    
T  4247771 aagtgcttatgtataagctatttctataacaaaagataaaaaaattcaaactgttgtcataaaagtaataagctgttt 4247694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 5550105 - 5550150
Alignment:
Q  373 ataaagtcaaactgtttt-atataagttataagctgttttcatata 417  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  5550105 ataaagtcaaattgttttcatataagctataagctgttttcatata 5550150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 411
Target Start/End: Original strand, 323744 - 323823
Alignment:
Q  335 aagtgtttatgtataagctatttctata--acaacatataataaagtcaaactgtttt-atataagttataagctgtttt 411  Q
    ||||| || |||||||||||||||||||  | || ||| |||||| |||||||||||| ||||||||||| |||| ||||    
T  323744 aagtggttttgtataagctatttctatattaaaagataaaataaattcaaactgttttcatataagttatgagctatttt 323823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 2514635 - 2514718
Alignment:
Q  335 aagtgtttatgtataagctatttctata--acaacatataataaagtcaaact-gttttatataagttataagctgttttcata 415  Q
    ||||| ||||||||||||||||||||||  | || ||| ||||||||||||||  |||||||| || |||||| | ||||||||    
T  2514635 aagtgcttatgtataagctatttctataataaaagataaaataaagtcaaactaattttatatgagctataagttattttcata 2514718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 4420555 - 4420606
Alignment:
Q  340 tttatgtataagctatttctataac--aacatataataaagtcaaactgttt 389  Q
    ||||||||||||||| |||||||||  || ||| ||||||||||||||||||    
T  4420555 tttatgtataagctacttctataacaaaagataaaataaagtcaaactgttt 4420606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 382
Target Start/End: Original strand, 8010290 - 8010338
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaac-atataataaagtcaa 382  Q
    ||||| ||| ||||||||||||||||||||||| ||| |||||||||||    
T  8010290 aagtgcttaggtataagctatttctataacaacaataaaataaagtcaa 8010338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 9027510 - 9027585
Alignment:
Q  335 aagtgtttatgtataagctatttctataaca--acatataataaagtcaaactgtttt-atataagttataagctg 407  Q
    ||||| |||| ||||||||||||||| || |  | ||| ||||||||||||||||||| |||||||| ||||||||    
T  9027510 aagtgcttatctataagctatttctacaatagaagataaaataaagtcaaactgttttaatataagtaataagctg 9027585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 10154193 - 10154237
Alignment:
Q  372 aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||    
T  10154193 aataaagtcaaactgttttcatataagttataagctactttcata 10154237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 31564816 - 31564768
Alignment:
Q  342 tatgtataagctatttctataacaacatataataaagtcaaactgtttt 390  Q
    |||||||||||||||| |||||||| ||| ||| |||||| ||||||||    
T  31564816 tatgtataagctatttttataacaagataaaatgaagtcacactgtttt 31564768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 11795031 - 11795108
Alignment:
Q  341 ttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||| ||||||| ||||  |||| |||||||||| |||||||| ||||||||||||||||| |||||||    
T  11795031 ttatgtataagctttttctatgacaaaacatacaataaagtcacactgttttcatataagttataagctgatttcata 11795108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 6509426 - 6509357
Alignment:
Q  347 ataagctatttctataacaacatataataaagtcaaactgt-tttatataagttataagctgttttcata 415  Q
    ||||| ||| |||||||||| ||| |||||||||||| ||| |||||||||| |||||||||||||||||    
T  6509426 ataagttatatctataacaagataaaataaagtcaaattgtatttatataagctataagctgttttcata 6509357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 416
Target Start/End: Original strand, 9699940 - 9700018
Alignment:
Q  341 ttatgtataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcatat 416  Q
    |||||||||||||||||| ||||||| |  || ||||| |||||| |||||| | |||| |||||||||||||||||||    
T  9699940 ttatgtataagctatttcgataacaaaagttaaaataaggtcaaattgttttcaaataaattataagctgttttcatat 9700018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 28769470 - 28769393
Alignment:
Q  341 ttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||||||||||| |||||||||   ||| ||| |||||||||| ||||  |||||| |||||||||||||||||    
T  28769470 ttatgtataagctattcctataacaaactataaaattaagtcaaactattttcttataagctataagctgttttcata 28769393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 5290574 - 5290626
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt 390  Q
    ||||| ||||||||||||||||||||||||||   |||| | ||||||||||||||    
T  5290574 aagtgcttatgtataagctatttctataacaa---ataaaatagtcaaactgtttt 5290626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 1470985 - 1470910
Alignment:
Q  343 atgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||||||| || | ||||  |||||||||| |  ||| ||||||| |||||||||||||||||    
T  1470985 atgtataagctatttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcata 1470910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 363
Target Start/End: Original strand, 4558731 - 4558759
Alignment:
Q  335 aagtgtttatgtataagctatttctataa 363  Q
    |||||||||||||||||||||||||||||    
T  4558731 aagtgtttatgtataagctatttctataa 4558759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 8536185 - 8536129
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataa-taaagtcaaactgtttt 390  Q
    ||||| |||||||||||||||||||||||||| ||| || | |||||||| ||||||    
T  8536185 aagtgcttatgtataagctatttctataacaaaataaaagtgaagtcaaattgtttt 8536129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 9836979 - 9836908
Alignment:
Q  347 ataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||| |||||||||  ||||  |||||||||||| |||| |||||||||| || |||||||||||    
T  9836979 ataagctatttttataacaactgataaagtaaagtcaaactattttcatataagttacaacctgttttcata 9836908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 10075681 - 10075605
Alignment:
Q  342 tatgtataagctatttctataa-caacatataa-taaagtcaaact-gttttatataagttataagctgttttcata 415  Q
    |||||||||||||||| |||||  || | |||| ||||||||||||  |||||||||||||||||||| ||||||||    
T  10075681 tatgtataagctatttgtataataaaaacataattaaagtcaaactatttttatataagttataagctattttcata 10075605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 26716573 - 26716525
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataataaagtcaaa 383  Q
    ||||| |||||||||||||| ||||||||||| ||  ||||||||||||    
T  26716573 aagtgcttatgtataagctacttctataacaagattaaataaagtcaaa 26716525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 29699193 - 29699268
Alignment:
Q  341 ttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttca 413  Q
    ||||||| ||| |||||||||||||| | ||||  |||||||||| |||| | || ||||||||||||||||||||    
T  29699193 ttatgtacaagttatttctataacaaaagataaaataaagtcaaaatgttgtcatctaagttataagctgttttca 29699268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 411
Target Start/End: Complemental strand, 30988129 - 30988050
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactg-ttttatataagttataagctgtttt 411  Q
    |||| ||| |||||||  |||||| ||||||| ||||||  |||| |||||||| ||||| |||||||||||||||||||    
T  30988129 aagtttttttgtataatttatttcaataacaagatataaaataaaatcaaactgcttttaaataagttataagctgtttt 30988050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 34236135 - 34236175
Alignment:
Q  372 aataaagtcaaactgttttatataagttataagctgttttc 412  Q
    |||||||| |||||||||| ||| |||||||||||||||||    
T  34236135 aataaagttaaactgttttgtatgagttataagctgttttc 34236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 43208270 - 43208226
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataataaagt 379  Q
    |||| ||||||||||||||||||||||||||| |||  |||||||    
T  43208270 aagtatttatgtataagctatttctataacaagatactataaagt 43208226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 29430693 - 29430771
Alignment:
Q  339 gtttatgtataagctatttctataacaaca-tataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||||||||||||||||||||||| | |  |||||||||||||||||||  |||||| ||||||||||| |||||    
T  29430693 gtttatgtataagctatttctataacaaaagttaaataaagtcaaactgttttcttataagctataagctgttctcata 29430771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 29503219 - 29503137
Alignment:
Q  334 gaagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||||||||||| | |||||||||||||| ||| |||||||||||||| |||| | | |||||||||| ||||| ||||    
T  29503219 gaagtgtttatgtatatgatatttctataacaagataaaataaagtcaaactattttcaaagaagttataagatgtttccata 29503137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 3235519 - 3235436
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacat--ataataaagtcaaactgttttatataagttataagctgttttcatata 417  Q
    ||||| |||||||| |||||||| |||||||| ||  | |||||||||||||||||| ||||||  |||||||||||||||||||    
T  3235519 aagtgcttatgtattagctatttttataacaa-atgaaaaataaagtcaaactgtttcatataaactataagctgttttcatata 3235436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 5133711 - 5133786
Alignment:
Q  341 ttatgtataagctatttctataac--aacatataataaagtcaaactg-ttttatataagttataagctgttttca 413  Q
    ||||||||||||||||||||||||  || ||| |||||||  |||||| ||||||||||| |||||||||||||||    
T  5133711 ttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataagctgttttca 5133786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 411
Target Start/End: Complemental strand, 7103612 - 7103541
Alignment:
Q  341 ttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgtttt 411  Q
    ||||||| || |||| | |||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||    
T  7103612 ttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagctataagctgtttt 7103541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 37053527 - 37053609
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcat 414  Q
    ||||| |||||||||  |||||||||||||  || ||| ||||||||||||||||||| |||||||||||||| | |||||||    
T  37053527 aagtgcttatgtatagactatttctataacagaaaataaaataaagtcaaactgttttcatataagttataagtttttttcat 37053609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 1742157 - 1742086
Alignment:
Q  347 ataagctatttctataacaacatataata--aagtcaaactgttt-tatataagttataagctgttttcata 415  Q
    |||| ||||||||||||||| |||||| |  |||||||||| ||| |||||||| |||||||||||||||||    
T  1742157 ataaactatttctataacaaaatataaaatgaagtcaaactctttatatataagatataagctgttttcata 1742086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 10143105 - 10143188
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactg-ttttatataagttataagctgttttcata 415  Q
    ||||| ||||||||||| ||||||||||||  || ||| ||| ||||||||||| ||||||||||| |||||| | ||||||||    
T  10143105 aagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcata 10143188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 35755639 - 35755556
Alignment:
Q  335 aagtgtttatgtataagctatttctataa--caacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||||||||||||||||||||||||   || | | |||||||||||| |||||| || |||| |||||| ||||||||||    
T  35755639 aagtgtttatgtataagctatttctataatcaaatagaaaataaagtcaaattgttttcatgtaagctataagttgttttcata 35755556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 3673740 - 3673822
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttcat 414  Q
    ||||| |||||||| || |||||||||||||| ||||  |||||||| ||| |||||| |||||||||||||| | |||||||    
T  3673740 aagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcatataagttataagtttttttcat 3673822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 366
Target Start/End: Original strand, 13864583 - 13864614
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaa 366  Q
    ||||||||||||||||||||||||||||||||    
T  13864583 aagtgtttatgtataagctatttctataacaa 13864614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 14278031 - 14277949
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtc-aaactgtttt-atataagttataagctgttttca 413  Q
    ||||| |||||||||| |||||||||||||  |||||  ||||||||| |||||||||| |||||||||||| | ||||||||    
T  14278031 aagtgcttatgtataaactatttctataactaaacattaaataaagtcaaaactgttttcatataagttatatgttgttttca 14277949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 366
Target Start/End: Complemental strand, 38239688 - 38239657
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaa 366  Q
    ||||||||||||||||||||||||||||||||    
T  38239688 aagtgtttatgtataagctatttctataacaa 38239657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 3102632 - 3102709
Alignment:
Q  341 ttatgtataagctatttctataacaacatat--aataaagtcaaact-gttttatataagttataagctgttttcata 415  Q
    ||||||||||||||||| |||| ||| ||||  ||||||||||||||  ||||||||||  ||| |||||||||||||    
T  3102632 ttatgtataagctatttttatagcaaaatataaaataaagtcaaactatttttatataatctattagctgttttcata 3102709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 365
Target Start/End: Original strand, 9478232 - 9478262
Alignment:
Q  335 aagtgtttatgtataagctatttctataaca 365  Q
    |||||||||||||||||||||||||||||||    
T  9478232 aagtgtttatgtataagctatttctataaca 9478262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 17952832 - 17952755
Alignment:
Q  341 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||| |||||||||||||||||||  || ||| |||||||||||||| |||| ||||||| || ||| ||||||||||    
T  17952832 ttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcata 17952755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 39341218 - 39341139
Alignment:
Q  341 ttatgtataagctatttctataacaacatat----aataaagtcaaactgtttta-tataagttataagctgttttcata 415  Q
    |||||||| || |||||||||||||| ||||    |||||||| ||||||||||  ||||||||||||||||||| ||||    
T  39341218 ttatgtatgagttatttctataacaaaatattaaaaataaagttaaactgttttggtataagttataagctgtttacata 39341139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 5045294 - 5045238
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgttt 389  Q
    ||||||||||||||||||||||| ||||||  || ||| ||||||||||| ||||||    
T  5045294 aagtgtttatgtataagctatttttataacaaaagataaaataaagtcaagctgttt 5045238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 39621892 - 39621967
Alignment:
Q  341 ttatgtataagctatttctata--acaacatataataaagtcaaactgttttatataagttataagctgttttcata 415  Q
    ||||| ||||| ||||||||||  |||| ||| |||||||||||||| |||| |||||  |||||||||||||||||    
T  39621892 ttatgaataagatatttctataacacaaaataaaataaagtcaaact-ttttgtataatctataagctgttttcata 39621967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 33192126 - 33192197
Alignment:
Q  335 aagtgtttatgtataagctatttctataaca--acatataataaagtcaaactgtttt-atataagttataa 403  Q
    ||||| |||| || || ||||||||||||||  | ||| ||||||||||||||||||| |||||||||||||    
T  33192126 aagtgcttatataaaaactatttctataacataagataaaataaagtcaaactgttttcatataagttataa 33192197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 34055038 - 34054955
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgttt-tatataagttataagctgttttcata 415  Q
    ||||| ||||||||| ||||||||||||||  || ||| ||||||| ||||||||||  ||||| | |||||| ||||||||||    
T  34055038 aagtgcttatgtataggctatttctataacaaaagataaaataaaggcaaactgtttacatatatgatataaggtgttttcata 34054955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 415
Target Start/End: Original strand, 37276722 - 37276762
Alignment:
Q  376 aagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  37276722 aagtcaaactgttttcatataagttataagttgttttcata 37276762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 32920535 - 32920454
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||| ||||||||||| |||||||| ||| ||||||||||||  ||||| ||| ||| |||||| ||||||||||    
T  32920535 aagtgtttatggataagctatttttataacaagataaaataaagtcaaatcgttttaatagaagctataagttgttttcata 32920454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 35958593 - 35958671
Alignment:
Q  340 tttatgtataagctatttctataac--aacatataataaagtcaaa-ctgttttatataagttataagctgttttcata 415  Q
    |||||||||||||||||||||||||  ||  || ||||||||||||  ||||||||||||| || ||||||||||||||    
T  35958593 tttatgtataagctatttctataacataagttaaaataaagtcaaatttgttttatataagctagaagctgttttcata 35958671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 23819023 - 23819105
Alignment:
Q  335 aagtgtttatgtataagctatttctataac-aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||| |||||| ||||| || ||| |||  |||||||||||||| |||||||||||||  ||||||||||    
T  23819023 aagtgtttatgtataagttatttccataacaaatataaaatgtagtcaaactgttttcatataagttataacatgttttcata 23819105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 42322016 - 42321936
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttc 412  Q
    ||||||||||| ||||||||||| ||||||||   ||| |||||||||||| |||||| |||||| ||||||| |||||||    
T  42322016 aagtgtttatgaataagctatttttataacaaatgataaaataaagtcaaattgttttcatataaattataagttgttttc 42321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 51044596 - 51044544
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaact 385  Q
    ||||||||||||||||||||||||||||||  || ||| ||||||||||||||    
T  51044596 aagtgtttatgtataagctatttctataacaaaagataaaataaagtcaaact 51044544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 4191672 - 4191730
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatat---aataaagtcaaactgtttt 390  Q
    ||||| |||||||||||||||||||||||||| | ||   |||||||||||||||||||    
T  4191672 aagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgtttt 4191730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 21952906 - 21952968
Alignment:
Q  347 ataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagct 406  Q
    ||||||||||||||||||||||  || |||||||||||| |||||| ||||||| ||||||||    
T  21952906 ataagctatttctataacaacaagtaaaataaagtcaaattgttttcatataagctataagct 21952968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 49219073 - 49219155
Alignment:
Q  336 agtgtttatgtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||| ||| ||||||| |||||||||||||| ||||  |||||||||||| | |||| ||||||| |||||| ||||||||||    
T  49219073 agtggttaggtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcata 49219155  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 54462235 - 54462180
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt 390  Q
    ||||| ||||||| |||||||||||||||||| ||  |||||||||||||| ||||    
T  54462235 aagtgcttatgtaaaagctatttctataacaagatgaaataaagtcaaactatttt 54462180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 411
Target Start/End: Complemental strand, 30338723 - 30338650
Alignment:
Q  341 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgtttt 411  Q
    |||||||||| |||||||||||||  || ||| |||||||| |||||||||| ||||||| ||||| |||||||    
T  30338723 ttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatataagctataaactgtttt 30338650  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 54325174 - 54325093
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttca 413  Q
    ||||| || ||||||| |||||||||| |||| | ||||  ||||||||||||||||| ||||||| |||||||| ||||||    
T  54325174 aagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttca 54325093  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 55437415 - 55437373
Alignment:
Q  341 ttatgtataagctatttctataacaacatataataaagtcaaa 383  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaa 55437373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 21157701 - 21157785
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcatat 416  Q
    ||||| |||||||| ||||||||  |||||||  |||||  ||||||||||||||||| || |||| |||||| |||||||||||    
T  21157701 aagtgcttatgtatcagctattttgataacaaagtataaactaaagtcaaactgttttcatgtaagctataagatgttttcatat 21157785  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 404
Target Start/End: Complemental strand, 46013437 - 46013365
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataa--taaagtcaaactg-ttttatataagttataag 404  Q
    |||||||||||| ||| ||||||||  ||||| | ||||  ||||||||||||| ||||||||||||||||||    
T  46013437 aagtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataagttataag 46013365  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 18628641 - 18628597
Alignment:
Q  372 aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||    
T  18628641 aatatagtcaaactgtttttatataagttataaactgttttcata 18628597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 21952508 - 21952563
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaaca--tataataaagtcaaactgtt 388  Q
    ||||||||||| |||||||||||||||||||| |  || ||| |||||||||||||    
T  21952508 aagtgtttatgcataagctatttctataacaaaaggtaaaatcaagtcaaactgtt 21952563  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 38462214 - 38462297
Alignment:
Q  335 aagtgtttatgtataagctatttctata--acaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||||| |||||||||||||||||  | || ||| ||||||||||||||||||| ||||| | ||||| |||||||||||    
T  38462214 aagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcata 38462297  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 51278286 - 51278237
Alignment:
Q  343 atgtataagctatttctataacaacatat--aataaagtcaaactgtttt 390  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  51278286 atgtataagctatttctataacaaaatattaaataaagtcaaactgtttt 51278237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 24887409 - 24887337
Alignment:
Q  346 tataagctatttctataaca--acatataataaagtcaaactgt-tttatataagttataagctgttttcata 415  Q
    ||||||||||||||||||||  | ||| |||||||||||||||| || ||||||| || ||||||||||||||    
T  24887409 tataagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcata 24887337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 28306102 - 28306174
Alignment:
Q  346 tataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||||| |||||||||| |  || ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  28306102 tataagctatctctataacaaaaagtaaaataaagtcaaactgttttcatataagttacaagttgttttcata 28306174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 411
Target Start/End: Complemental strand, 20192743 - 20192664
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgtttt 411  Q
    ||||| ||||||||||||||||| ||||||  || ||| ||||||||||||| ||||| ||||||  |||||||||||||    
T  20192743 aagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtttt 20192664  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 415
Target Start/End: Original strand, 22232767 - 22232842
Alignment:
Q  343 atgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||| ||||||||   ||| ||||||||||||||||||| ||||||||  |||||| ||||||||    
T  22232767 atgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataagtcgtaagctattttcata 22232842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 12985458 - 12985403
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt 390  Q
    ||||||||||||||||| | |||||||||||| ||| |||||||  ||||||||||    
T  12985458 aagtgtttatgtataagttgtttctataacaaaataaaataaagataaactgtttt 12985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 20669118 - 20669167
Alignment:
Q  341 ttatgtataagctatttctataacaacatat--aataaagtcaaactgtt 388  Q
    |||||||||||||||||||||||||| ||||  |||||||||||| ||||    
T  20669118 ttatgtataagctatttctataacaagatatacaataaagtcaaaatgtt 20669167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 23815992 - 23816066
Alignment:
Q  341 ttatgtataagctatttctataacaacatataataaagtcaaactgttttatataagttataagctgttttcata 415  Q
    ||||||||||| ||||||||||| || | |||||||||| ||| ||| || ||| || || ||||||||||||||    
T  23815992 ttatgtataagttatttctataataaaagataataaagttaaattgtattctatgagctagaagctgttttcata 23816066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 42039092 - 42039173
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgttttatataagttataagctgttttcat 414  Q
    ||||| ||||||||||||||||||| ||||  || ||| |||||||||| |  |||| |||| ||||||||| |||||||||    
T  42039092 aagtgcttatgtataagctatttctgtaacaaaaaataaaataaagtcagatggtttcatatgagttataagttgttttcat 42039173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 1395611 - 1395687
Alignment:
Q  342 tatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||||||||||||||||||||  || ||| |||||||||||| | |||| ||||||| ||| | |||||||||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcata 1395687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 3182499 - 3182419
Alignment:
Q  335 aagtgtttatgtataagctatttctat--aacaacatataataaagtcaaactgtttt-atataagttataagctgttttc 412  Q
    ||||||||||||||||| || ||||||  || || ||| |||||||||||| |||||| ||| |||||||| |||||||||    
T  3182499 aagtgtttatgtataagttacttctatagaaaaagataaaataaagtcaaattgttttcatacaagttataggctgttttc 3182419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 366
Target Start/End: Original strand, 44488819 - 44488848
Alignment:
Q  337 gtgtttatgtataagctatttctataacaa 366  Q
    ||||||||||||||||||||||||||||||    
T  44488819 gtgtttatgtataagctatttctataacaa 44488848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 2201103 - 2201143
Alignment:
Q  375 aaagtcaaactgtttt-atataagttataagctgttttcat 414  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  2201103 aaagtcaaactgttttcatataagctataagctgttttcat 2201143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 24605153 - 24605102
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaacatat--aataaagtcaaac 384  Q
    ||||||||||||||||| |||||||||||||| | ||  |||||||||||||    
T  24605153 aagtgtttatgtataagttatttctataacaaaagatgaaataaagtcaaac 24605102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 31337499 - 31337455
Alignment:
Q  372 aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||    
T  31337499 aataaagtcaaactgtttttatataagttataagttgtattcata 31337455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 40122883 - 40122832
Alignment:
Q  341 ttatgtataagctatttctataac--aacatataataaagtcaaactgtttt 390  Q
    |||||||||||||||||| |||||  || ||| |||||||||||||||||||    
T  40122883 ttatgtataagctatttcaataacaaaagataaaataaagtcaaactgtttt 40122832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 41452495 - 41452539
Alignment:
Q  372 aataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||    
T  41452495 aataaagtcaaactgttttcatattagttgtaagctgttttcata 41452539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 42084388 - 42084305
Alignment:
Q  335 aagtgtttatgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    |||||| |||||||||||||||||||||||||   ||| ||||| |||||  |||||| ||||||| ||| || ||||||||||    
T  42084388 aagtgtctatgtataagctatttctataacaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcata 42084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 27509 - 27592
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 415  Q
    ||||| ||||||||||| ||||||||||||  || ||| |||||||||||| |||||| ||||||  |||||| ||||||||||    
T  27509 aagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcata 27592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 1211 - 1159
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaact 385  Q
    ||||| ||||||||||||||||||||||||  || ||| ||||||||||||||    
T  1211 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaact 1159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 2764 - 2816
Alignment:
Q  335 aagtgtttatgtataagctatttctataac--aacatataataaagtcaaact 385  Q
    ||||| ||||||||||||||||||||||||  || ||| ||||||||||||||    
T  2764 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaact 2816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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