View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11680_low_5 (Length: 319)
Name: NF11680_low_5
Description: NF11680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11680_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 11630469 - 11630180
Alignment:
| Q |
20 |
gaagtagttcaagatgtgcaaggtttggcaaatcctgcagatataccagtggatcatgtttcaaatagctccatttcagaaataacctggccaggttatg |
119 |
Q |
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| T |
11630469 |
gaagtagttcaagatgtgcaaggtttggcaaatcctgcagatataccagtggatcatgtttcaaatagctccatttcagaaataacctggccaggttatg |
11630370 |
T |
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| Q |
120 |
aagtgaaggtatccagcatggtaactcttttagcctccctgacaaatacaatcgttgaagaaatggagggggtgtagaaagagatgtcaaatcaataact |
219 |
Q |
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| T |
11630369 |
aagtgaaggtatccagcatggtaactcttttagcctccctgacaaatacaatcgttgaagaaatggaggcggtgtagaaagagatgtcaaatcaataact |
11630270 |
T |
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| Q |
220 |
ttattctcaccctcagaagtaacagagagtgcagaaagactaattaatttttcaatgcagaaacataagtccttcccatcttcctctctg |
309 |
Q |
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| T |
11630269 |
ttattctcaccctcagaagtaacagagagtgcagaaagactgactaatttttcaatgcagaaacagaaatccttcccatcttcctctctg |
11630180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 11652777 - 11652488
Alignment:
| Q |
20 |
gaagtagttcaagatgtgcaaggtttggcaaatcctgcagatataccagtggatcatgtttcaaatagctccatttcagaaataacctggccaggttatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
11652777 |
gaagtagttcaagatgtgcaaggtttggcaaatcctgcagatataccaatggatcatgtttcaaacagctccatttcagaaataacctggccagattatg |
11652678 |
T |
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| Q |
120 |
aagtgaaggtatccagcatggtaactcttttagcctccctgacaaatacaatcgttgaagaaatggagggggtgtagaaagagatgtcaaatcaataact |
219 |
Q |
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| T |
11652677 |
aagagaaggtatccaacttggtaactcttgtagtctccctgataaatacaatctttgaagaaatggagggggtttacaaagggatgtcaaatcaataaat |
11652578 |
T |
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| Q |
220 |
ttattctcaccctcagaagtaacagagagtgcagaaagactaattaatttttcaatgcagaaacataagtccttcccatcttcctctctg |
309 |
Q |
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|||| ||||||||||||||||||||| | ||| | |||||| | |||||||| ||||| |||| || ||||||||||||||||||||| |
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| T |
11652577 |
ttatcctcaccctcagaagtaacagataaggcacacagactagtcaatttttcgatgcaccaacaaaattccttcccatcttcctctctg |
11652488 |
T |
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