View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_high_10 (Length: 260)
Name: NF11681_high_10
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 53525721 - 53525490
Alignment:
| Q |
1 |
ctgtgactaaggaagaccttcttcacactaacactgacagttcagtgatctcttccacttagccgcaaaatgtatcgttttcccaccgtcattctctctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53525721 |
ctgtgactaaggaagaccttcttcacactaacactgacagttcagtgatctcttccacttagccgcaaaatgtatcgttttcccaccgtcattctctctc |
53525622 |
T |
|
| Q |
101 |
gccacctccaccgccgcaaattatcctcaaccacctcccaaccactcgaactccccttatctcaccctatatacaccatatggggctccaacaccgccgt |
200 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53525621 |
gccacctccaccgccgcaaattatcctccaccacctcccaaccactcgaactccccttatctcaccctatatacaccatatggggctccaacaccgccgt |
53525522 |
T |
|
| Q |
201 |
cggtaaaacccttgtctctgccggtatcgccg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
53525521 |
cggtaaaacccttgtctctgccggtatcgccg |
53525490 |
T |
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