View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_high_11 (Length: 256)
Name: NF11681_high_11
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 50981867 - 50981722
Alignment:
| Q |
1 |
ttaccaataacactataattatcatcatttttggaggacgtaggttttcctagggctcgcatgatcaattagttaatttataaggaaaatcatctcgcgt |
100 |
Q |
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| T |
50981867 |
ttaccaataacactataattatcgtcatttttggaggacgtaggttttcctagggttcgcatgatcaattagttaatttataaggaaaatcatctcgcgt |
50981768 |
T |
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| Q |
101 |
tttcacaaattgtatgcacccatctcctttaatttcacttattttc |
146 |
Q |
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| T |
50981767 |
tttcacaaattgtatgcacccatctcctttaatttcacttattttc |
50981722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 51085001 - 51084856
Alignment:
| Q |
1 |
ttaccaataacactataattatcatcatttttggaggacgtaggttttcctagggctcgcatgatcaattagttaatttataaggaaaatcatctcgcgt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51085001 |
ttaccaataacactataattatcgtcatttttggaggacgtaggttttcctagggttcgcatgatcaattagttaatttataaggaaaatcatctcgcgt |
51084902 |
T |
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| Q |
101 |
tttcacaaattgtatgcacccatctcctttaatttcacttattttc |
146 |
Q |
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| T |
51084901 |
tttcacaaattgtatgcacccatctcctttaatttcacttattttc |
51084856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 50981655 - 50981611
Alignment:
| Q |
212 |
cccatctccttgatatatattggcacatctcttttcctttctggc |
256 |
Q |
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| T |
50981655 |
cccatctcctttatatatattggcacatctcttttcctttctggc |
50981611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 51084789 - 51084745
Alignment:
| Q |
212 |
cccatctccttgatatatattggcacatctcttttcctttctggc |
256 |
Q |
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| T |
51084789 |
cccatctcctttatatatattggcacatctcttttcctttctggc |
51084745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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