View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_high_14 (Length: 241)
Name: NF11681_high_14
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_high_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 7906808 - 7907025
Alignment:
| Q |
18 |
gttaggtttttgaaaaattgaacacacaacttcaaatataatattactatatttgattctttgattaacacttttctttcttctattttatgcaaactac |
117 |
Q |
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| T |
7906808 |
gttaggtttttgaaaaattgaacacacaacttcaaatataatattactatatat------ttgattatcacttttcttttttctattttatgcaaactac |
7906901 |
T |
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| Q |
118 |
aatgatatacacataattttagcattttcaaaattcaaattgcctaattgtatatgattagtctcgataactgaactcaactnnnnnnnnttatttaaaa |
217 |
Q |
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| T |
7906902 |
aatgatatacacataattttagcattttcaaaattcaaattgcctaattgtatatgattagtctggataactgaactcaactaaaaaaaattatttaaaa |
7907001 |
T |
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| Q |
218 |
agataaatatatttattttaccat |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
7907002 |
agataaatatatttattttaccat |
7907025 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 15353109 - 15353145
Alignment:
| Q |
43 |
acaacttcaaatataatattactatatttgattcttt |
79 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
15353109 |
acaactttcaatataatattactatatttgattcttt |
15353145 |
T |
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