View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11681_high_17 (Length: 240)

Name: NF11681_high_17
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11681_high_17
NF11681_high_17
[»] chr3 (2 HSPs)
chr3 (1-222)||(50982157-50982380)
chr3 (1-222)||(51085291-51085514)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50982157 - 50982380
Alignment:
Q  1 catgttattgaagaaagtaactacctagctataaactttacgactagctttgttgttgacaagaccttggattggaagcaaaaatgaaaaatataaccac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50982157 catgttattgaagaaagtaactacctagctataaactttacgactacctttgttgttgacaagaccttggattggaagcaaaaatgaaaaatataaccac 50982256  T
Q  101 ccatttat-gggagaacagaacaccaatgtctgtctttttgtttagtcttttttctagagtctctactacagcaaataaacccttcagttttgcctgaca 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50982257 ccatttatggggagaacagaacaccaatgtctgtctttttgtttagtcttttttctagagtctctactacagcaaataaacccttcagttttgcctgaca 50982356  T
Q  200 aattacttaattaa-tgattagtc 222  Q
    |||||||||||||| |||||||||    
T  50982357 aattacttaattaattgattagtc 50982380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 51085291 - 51085514
Alignment:
Q  1 catgttattgaagaaagtaactacctagctataaactttacgactagctttgttgttgacaagaccttggattggaagcaaaaatgaaaaatataaccac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51085291 catgttattgaagaaagtaactacctagctataaactttacgactacctttgttgttgacaagaccttggattggaagcaaaaatgaaaaatataaccac 51085390  T
Q  101 ccatttat-gggagaacagaacaccaatgtctgtctttttgtttagtcttttttctagagtctctactacagcaaataaacccttcagttttgcctgaca 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51085391 ccatttatggggagaacagaacaccaatgtctgtctttttgtttagtcttttttctagagtctctactacagcaaataaacccttcagttttgcctgaca 51085490  T
Q  200 aattacttaattaa-tgattagtc 222  Q
    |||||||||||||| |||||||||    
T  51085491 aattacttaattaattgattagtc 51085514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University